Trimin1|9526|CE9525_18 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|9526
Unique NameTrimin1|9526|CE9525_18
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length68
Homology
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: PSBH_NEOYE (Photosystem II reaction center protein H n=202 Tax=Rhodophyta TaxID=2763 RepID=PSBH_NEOYE)

HSP 1 Score: 125 bits (314), Expect = 1.890e-36
Identity = 60/67 (89.55%), Postives = 66/67 (98.51%), Query Frame = 0
Query:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 67
            MALRTRLGE+LRPLNSEYGKVAPGWGTTPIMGIFMLLFF+FLLIILQIYNSSL++ENVDVDW T+G+
Sbjct:    1 MALRTRLGEILRPLNSEYGKVAPGWGTTPIMGIFMLLFFLFLLIILQIYNSSLVLENVDVDWATLGS 67          
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: A0A7S6UA07_9STRA (Photosystem II reaction center protein H n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA07_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.090e-35
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0
Query:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIG 66
            M LRTRLGE+L PLNSEYGKVAPGWGTTPIMG+FMLLFF+FLLIILQIYNSSLIIENVDVDWQ++G
Sbjct:    1 MTLRTRLGEILSPLNSEYGKVAPGWGTTPIMGVFMLLFFIFLLIILQIYNSSLIIENVDVDWQSLG 66          
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: UPI001BF0BE92 (photosystem II protein H n=1 Tax=Pseudoerythrocladia kornmannii TaxID=753682 RepID=UPI001BF0BE92)

HSP 1 Score: 122 bits (306), Expect = 3.140e-35
Identity = 58/67 (86.57%), Postives = 65/67 (97.01%), Query Frame = 0
Query:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 67
            M LRTRLGE+LRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQ+YNSSLI++NVDVDW ++G+
Sbjct:    1 MTLRTRLGEILRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQVYNSSLILDNVDVDWASLGS 67          
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: A0A222AHJ9_9CRYP (Photosystem II reaction center protein H n=3 Tax=Cryptophyceae TaxID=3027 RepID=A0A222AHJ9_9CRYP)

HSP 1 Score: 121 bits (304), Expect = 6.340e-35
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 0
Query:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 67
            MALRTRLGELLRPLNSEYGKV+PGWGTTPIMG  MLLFFVFLLIILQIYNSSLIIENVDVDW ++G+
Sbjct:    1 MALRTRLGELLRPLNSEYGKVSPGWGTTPIMGFVMLLFFVFLLIILQIYNSSLIIENVDVDWASLGS 67          
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: PSBH_GUITH (Photosystem II reaction center protein H n=15 Tax=Eukaryota TaxID=2759 RepID=PSBH_GUITH)

HSP 1 Score: 120 bits (302), Expect = 1.280e-34
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 0
Query:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 67
            MALRTRLGELLRPLNSEYGKVAPGWGTTP MG  MLLFF+FLLIILQIYNSSLI+ENVDVDW ++GN
Sbjct:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPAMGFVMLLFFLFLLIILQIYNSSLILENVDVDWASLGN 67          
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: A6MW35_RHDSA (Photosystem II reaction center protein H n=5 Tax=Eukaryota TaxID=2759 RepID=A6MW35_RHDSA)

HSP 1 Score: 119 bits (299), Expect = 3.680e-34
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0
Query:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 67
            MALRTRLGELLRPLNSEYGKVAPGWGTTPIMG  MLLF VFLLIILQIYNSSLIIENVDVDW ++G+
Sbjct:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGFVMLLFAVFLLIILQIYNSSLIIENVDVDWASLGS 67          
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: UPI001FCDC0D8 (photosystem II protein H n=1 Tax=Glaucosphaera vacuolata TaxID=38265 RepID=UPI001FCDC0D8)

HSP 1 Score: 119 bits (297), Expect = 8.760e-34
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0
Query:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 67
            MALRTRLGE+LRPLNSEYGKVAPGWGTTP+MG FMLLFF+FLLIILQIYNSSLI+ENVDVDW    N
Sbjct:    1 MALRTRLGEILRPLNSEYGKVAPGWGTTPLMGFFMLLFFLFLLIILQIYNSSLILENVDVDWVRFKN 67          
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: A0A6P0TDP4_9CYAN (Photosystem II reaction center protein H n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A6P0TDP4_9CYAN)

HSP 1 Score: 118 bits (296), Expect = 1.060e-33
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 0
Query:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIG 66
            MA RTRLG LLRPLNSEYGKVAPGWGTTP+MG+FMLLFFVFLLIILQIYNSSLI+E +DVDW T+G
Sbjct:    1 MAQRTRLGNLLRPLNSEYGKVAPGWGTTPLMGVFMLLFFVFLLIILQIYNSSLILEGLDVDWTTLG 66          
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: A0A7R6WDZ1_9EUKA (Photosystem II reaction center protein H n=1 Tax=Haptophyceae sp. NIES-3900 TaxID=2748608 RepID=A0A7R6WDZ1_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 1.500e-33
Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 0
Query:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 67
            MALRTRLGE+L+PLNSEYGKVAPGWGTT +M IFMLLFF+FLLIILQIYNSSLIIENVDVDW ++G+
Sbjct:    1 MALRTRLGEILKPLNSEYGKVAPGWGTTVVMAIFMLLFFLFLLIILQIYNSSLIIENVDVDWASVGS 67          
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: A0A8J6ULV8_9CYAN (Photosystem II reaction center protein H n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6ULV8_9CYAN)

HSP 1 Score: 116 bits (290), Expect = 8.690e-33
Identity = 54/66 (81.82%), Postives = 64/66 (96.97%), Query Frame = 0
Query:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIG 66
            MA RT LG++L+PLNSEYGKVAPGWGTTP+MG+FMLLFFVFLLIILQ+YNSSL+IENVDVDW+++G
Sbjct:    1 MAQRTWLGDVLKPLNSEYGKVAPGWGTTPLMGVFMLLFFVFLLIILQVYNSSLLIENVDVDWRSLG 66          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBH_NEOYE1.890e-3689.55Photosystem II reaction center protein H n=202 Tax... [more]
A0A7S6UA07_9STRA1.090e-3589.39Photosystem II reaction center protein H n=1 Tax=S... [more]
UPI001BF0BE923.140e-3586.57photosystem II protein H n=1 Tax=Pseudoerythroclad... [more]
A0A222AHJ9_9CRYP6.340e-3589.55Photosystem II reaction center protein H n=3 Tax=C... [more]
PSBH_GUITH1.280e-3488.06Photosystem II reaction center protein H n=15 Tax=... [more]
A6MW35_RHDSA3.680e-3489.55Photosystem II reaction center protein H n=5 Tax=E... [more]
UPI001FCDC0D88.760e-3486.57photosystem II protein H n=1 Tax=Glaucosphaera vac... [more]
A0A6P0TDP4_9CYAN1.060e-3386.36Photosystem II reaction center protein H n=2 Tax=O... [more]
A0A7R6WDZ1_9EUKA1.500e-3385.07Photosystem II reaction center protein H n=1 Tax=H... [more]
A0A8J6ULV8_9CYAN8.690e-3381.82Photosystem II reaction center protein H n=4 Tax=C... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001056Photosystem II reaction centre protein HPFAMPF00737PsbHcoord: 4..55
e-value: 4.0E-33
score: 112.9
IPR001056Photosystem II reaction centre protein HPANTHERPTHR34469PHOTOSYSTEM II REACTION CENTER PROTEIN Hcoord: 3..60
IPR001056Photosystem II reaction centre protein HHAMAPMF_00752PSII_PsbHcoord: 1..61
score: 23.129364
IPR036863Photosystem II reaction centre protein H superfamilyGENE3D1.20.5.880Photosystem II reaction center protein Hcoord: 1..66
e-value: 2.0E-34
score: 119.0
IPR036863Photosystem II reaction centre protein H superfamilySUPERFAMILY161025Photosystem II 10 kDa phosphoprotein PsbHcoord: 3..64
NoneNo IPR availablePANTHERPTHR34469:SF4PHOTOSYSTEM II REACTION CENTER PROTEIN Hcoord: 3..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:223210..223413 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|9526mRNA_15066Tribonema minus UTEX_B_3156 mRNAContig_114 223170..223534 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|9526|CE9525_18 ID=Trimin1|9526|CE9525_18|Name=jgi.p|Trimin1|9526|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=68bp
MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYN
SSLIIENVDVDWQTIGN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001056PSII_PsbH
IPR036863PSII_PsbH_sf