mRNA_15054 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352279
Unique NamemRNA_15054
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352279 vs. uniprot
Match: A0A835ZEM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM9_9STRA)

HSP 1 Score: 443 bits (1139), Expect = 1.010e-152
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 1 
Query:    1 MLANGESGHDPTGSNSPAPGPQQAPSGEDASMLELCYGGTPQRLLLRGPPRSGRSSLLFDHAYRLARRGLRVTYICMKARIERQLPLQCAQAQEPHDAPQGWDPAALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVILGASAMALDGGIGAQAAACDARAALYALAMLEDAARFLGAHVVAXXXXXXXXXEPXXXXAFARYFPQLLRVAAHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVEYRLRVRRAHGDDFFECAVRQRPQ 867
            MLANGESGHDPTGSNSPAPGPQQAPSGEDASMLELCYGGTPQRLLLRGPPRSGRSSLLFDHAYRLARRGLRVTYICMKARIERQLPLQCAQAQEPHDAPQGWDPAALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVILGASAMALDGGIGAQAAACDARAALYALAMLEDAARFLGAHVVAXXXXXXXXXEPXXXXAFARYFPQLLRVAAHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVEYRLRVRRAHGDDFFECAVRQRPQ
Sbjct:    1 MLANGESGHDPTGSNSPAPGPQQAPSGEDASMLELCYGGTPQRLLLRGPPRSGRSSLLFDHAYRLARRGLRVTYICMKARIERQLPLQCAQAQEPHDAPQGWDPAALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVILGASAMALDGGIGAQAAACDARAALYALAMLEDAARFLGAHVVAXXXXXXXXXEPXXXXAFARYFPQLLRVAAHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVEYRLRVRRAHGDDFFECAVRQRPQ 289
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BLAST of jgi.p|Trimin1|352279 vs. uniprot
Match: A0A388K2P0_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388K2P0_CHABU)

HSP 1 Score: 65.9 bits (159), Expect = 1.610e-8
Identity = 50/150 (33.33%), Postives = 74/150 (49.33%), Query Frame = 1 
Query:  124 QRLLLRGPPRSGRSSLLFDHAYRLARR-GLR--VTYICMKARIERQLPLQCAQAQEPHDAPQGWDPAA--LERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVILGASAMALDGGIGAQAAACDARAALYALAMLEDAARFL 558
            +R LL GPPRSG++SLLF   Y  AR  G R  V +IC K RIE   PL            +G DP++    R+ M+Y+   ++L  +L  + +L     P AL++D+       S+  + GG+ +        A    LA+L DA  F+
Sbjct:   35 RRALLVGPPRSGKTSLLFQFCYNCARESGSRSHVVFICQKKRIENGPPL----------LSRGVDPSSEVFNRVHMRYLVDDKELRKYLACLHLLPNSQLPTALVIDNFSAFFDQSSSHVGGGVRSAHGRAQDMAIARTLALLCDAVDFV 174
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BLAST of jgi.p|Trimin1|352279 vs. uniprot
Match: A0A3B5YV82_WHEAT (Uncharacterized protein n=11 Tax=Pooideae TaxID=147368 RepID=A0A3B5YV82_WHEAT)

HSP 1 Score: 57.8 bits (138), Expect = 6.030e-6
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:  130 LLLRGPPRSGRSSLLFDHAY-RLARRGLRVTYICMKARIERQLPLQCAQAQEPHDAPQGWDPA--ALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDD 432
            LLL GPPR G++SLLF  A  R A  G  V +IC K R+E   P             QG +P+   L+RI +KY+   E +  +  +  +L  + FP A++VDD
Sbjct:   22 LLLSGPPRCGKTSLLFQFAINRAAESGRHVVFICSKGRLENSPPF----------LSQGVEPSLNVLQRIQIKYIEDDEGIRKYFAAFHLL--DDFPAAVIVDD 113
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BLAST of jgi.p|Trimin1|352279 vs. uniprot
Match: A0A2P6TS94_CHLSO (tRNA dimethylallyltransferase isoform A n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TS94_CHLSO)

HSP 1 Score: 56.6 bits (135), Expect = 2.110e-5
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:  130 LLLRGPPRSGRSSLLFDHAYRLARRGLRVTYICMKARIERQLPLQCAQAQEPHDAPQGWDPAALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVI 444
            LLL GP RSG+++LLF  A  LAR+G  V  +C + ++E   PL         +  Q  DPA  ER+ +KYVA+  +LL ++  +  L     P A+LVDD+  +
Sbjct:   35 LLLSGPERSGKTTLLFHAALSLARQGASVLLLCRREKLEACPPLL-------PEGVQNSDPA-WERVHIKYVANGYELLRYVSHIHALPNGP-PDAVLVDDLHAL 130
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352279 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZEM9_9STRA1.010e-152100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A388K2P0_CHABU1.610e-833.33Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]
A0A3B5YV82_WHEAT6.030e-637.50Uncharacterized protein n=11 Tax=Pooideae TaxID=14... [more]
A0A2P6TS94_CHLSO2.110e-538.10tRNA dimethylallyltransferase isoform A n=1 Tax=Ch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:146189..148187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352279|estExt_Genemark1.C_Ctg_1140019
Max annot lvl35493|Streptophyta
EggNOG OGs28PVH@1|root,2QWI4@2759|Eukaryota,37PJ0@33090|Viridiplantae,3GFEC@35493|Streptophyta,4JJ34@91835|fabids
Evalue3.69e-06
Seed ortholog4006.Lus10011825
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-07_004360.1
TranscriptId352601
TrackFilteredModels1
ProteinId352279
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352279gene_15054Tribonema minus UTEX_B_3156 geneContig_114 146189..148187 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15054_1exon_15054_1Tribonema minus UTEX_B_3156 exonContig_114 146189..146677 +
exon_15054_2exon_15054_2Tribonema minus UTEX_B_3156 exonContig_114 147485..148187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15054CDS_15054Tribonema minus UTEX_B_3156 CDSContig_114 146189..146677 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15054UTR3_15054Tribonema minus UTEX_B_3156 three_prime_UTRContig_114 147974..148187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352279Trimin1|352279|estExt_Genemark1.C_Ctg_1140019Tribonema minus UTEX_B_3156 polypeptideContig_114 146189..147973 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15054 ID=mRNA_15054|Name=jgi.p|Trimin1|352279|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1192bp|location=Sequence derived from alignment at Contig_114:146189..148187+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGCCAATGGCGAAAGCGGCCATGACCCAACTGGTAGCAACAGCCC
AGCCCCCGGACCACAGCAGGCGCCGTCAGGAGAGGATGCTTCAATGCTGG
AGCTCTGCTATGGAGGAACGCCGCAGCGCCTTCTGCTTCGAGGCCCCCCT
CGCAGCGGCAGGAGCAGCCTGCTGTTCGACCACGCCTACCGCCTGGCGCG
CAGGGGCCTGCGCGTCACCTACATCTGCATGAAAGCGCGCATCGAGAGGC
AGCTGCCCCTGCAGTGCGCCCAAGCGCAGGAGCCCCACGACGCGCCGCAG
GGCTGGGACCCGGCGGCCCTGGAGAGGATAGGCATGAAGTACGTGGCGAG
CAGGGAGGATCTGCTATGGTTTCTCGGCAGCGTCCAGATGCTGCGTAGAG
AAGCTTTCCCGTGCGCGCTGCTGGTGGACGATATCGACGTCATCCTCGGA
GCCAGCGCCATGGCGCTAGACGGCGGCATCGGCGCGCAGGCCGCGGCGTG
CGACGCGCGCGCGGCGCTGTACGCGCTGGCTATGCTGGAGGACGCCGCAC
GCTTCCTCGGCGCGCACGTCGTCGCCGCCGCCGCCGCGGCGGAAGCGTCC
CTCGAGCCCGGCGCCGCCGCCGCATTCGCGCGCTACTTCCCGCAGCTGCT
GCGCGTCGCTGCGCATGGGGGCGGCGGCGGCGGAGGCGGCGGCAGCGGCG
GCAGTGGCGGAGGCGGAGGCGGAGGAGGAGGTGGGGGTTATGTGCTTGCG
GATGAGAGCGCTGTGCAACTCGGCGGCGGGGGGGGGGGGGCGGTGGAGTA
CCGGCTGCGCGTGCGGCGCGCACACGGCGACGATTTCTTTGAGTGCGCGG
TGCGGCAGCGGCCGCAGCAGCAGCAGCAGCAGCAGCCGCTGCTCCCGCCG
CTGCCGCAGCAGCAGCAGCAGCGCCGCGCGCAGCATCAGCAGCAGCTGCC
GCCGCCACCGCAGCAGCAGTACCGATAGGATGACAGTGTGCAAAGAGTTT
GCTGTCCCTGCAGTGCGTGGTCCATTGGCCGGCTTTGTATTCTACACTGC
ACGGCAGAACTCTTGACGCACCTTGGAGCTCGGTGCCGCACAGTGGCACA
TGCAGGCGTCGCGCACGATTCGCAAAGCGCGCTGCAGCACCGCCGCTGCC
GCATGTACATACATTCGTTGTGAATACAGCTGGACACACAGG
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protein sequence of jgi.p|Trimin1|352279

>Trimin1|352279|estExt_Genemark1.C_Ctg_1140019 ID=Trimin1|352279|estExt_Genemark1.C_Ctg_1140019|Name=jgi.p|Trimin1|352279|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=326bp
MLANGESGHDPTGSNSPAPGPQQAPSGEDASMLELCYGGTPQRLLLRGPP
RSGRSSLLFDHAYRLARRGLRVTYICMKARIERQLPLQCAQAQEPHDAPQ
GWDPAALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVILG
ASAMALDGGIGAQAAACDARAALYALAMLEDAARFLGAHVVAAAAAAEAS
LEPGAAAAFARYFPQLLRVAAHGGGGGGGGGSGGSGGGGGGGGGGGYVLA
DESAVQLGGGGGGAVEYRLRVRRAHGDDFFECAVRQRPQQQQQQQPLLPP
LPQQQQQRRAQHQQQLPPPPQQQYR*
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mRNA from alignment at Contig_114:146189..148187+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15054 ID=mRNA_15054|Name=jgi.p|Trimin1|352279|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1999bp|location=Sequence derived from alignment at Contig_114:146189..148187+ (Tribonema minus UTEX_B_3156 )
ATGCTCGCCAATGGCGAAAGCGGCCATGACCCAACTGGTAGCAACAGCCC
AGCCCCCGGACCACAGCAGGCGCCGTCAGGAGAGGATGCTTCAATGCTGG
AGCTCTGCTATGGAGGAACGCCGCAGCGCCTTCTGCTTCGAGGCCCCCCT
CGCAGCGGCAGGAGCAGCCTGCTGTTCGACCACGCCTACCGCCTGGCGCG
CAGGGGCCTGCGCGTCACCTACATCTGCATGAAAGCGCGCATCGAGAGGC
AGCTGCCCCTGCAGTGCGCCCAAGCGCAGGAGCCCCACGACGCGCCGCAG
GGCTGGGACCCGGCGGCCCTGGAGAGGATAGGCATGAAGTACGTGGCGAG
CAGGGAGGATCTGCTATGGTTTCTCGGCAGCGTCCAGATGCTGCGTAGAG
AAGCTTTCCCGTGCGCGCTGCTGGTGGACGATATCGACGTCATCCTCGGA
GCCAGCGCCATGGCGCTAGACGGCGGCATCGGCGCGCAGGTGCGTGACGT
CAAACTGCTGATCACTGCCACCTCACCCCTGTGCACTCAGCGTCCGCTGC
CTGTTGGCGCAGCGTTCAACTTCAACGGTGCTCTTGGCAAGAGGCTACCG
CCTTGTTCTTCCGTTTGGCAGTGCGGTGATTCTGCGGCTGCACGCAGCGG
TGCACTGCTGACAACTACTTAGTCTGAGTGACCGGTGCGTGTGCGTGGAC
GCGAACGCGCCAATGCGTCCACGAGGAAGTGGCACGTGTGAGCAGGGTAG
CACCCCTCCACACTGCGAAAGTTCACAGTCGATGCGCGTCACTTTTTGAA
TGCATCGAAAACAGGACGTGCTCTGTTGGCACTGACGTCTGCCTGATGTT
GATGGTCAAGACAGAATACTGCGCAGTGTGTGTGCGGAGCTACGACCCGC
CCTCATGATTTGAAGAAGGAAGCACGCGGGCATGCATAGCTTCGCGGCCT
CCTGCTTCCTCTTGTCAACGCGCCAGAAATACGTCATGTCACTCCCGGCC
ATGAGCTGAGCGCTGCTGCGTCGCTCGCGGACAGCCGCACTCCGGCAGCT
GACCGATGTCCGCCGCTTTGGCTTGCACACCTCATTGCGTAAAGGCCTTG
CCACAAGCGCCACATGCCACGACCGCAGTGAACGCCGCAGCTGCCAGTAC
ACCTGCTTACAGCGGGCACTGCCTGCAATCATCATCTCATCATAGTCGGC
GCCGCCACCCAAGACCGCGCGTGACAGACAACGGCGCTACCGCATCAGCC
ACGCTGACGAACGAAGCGCCGCCGTTGCCAAACGCTCCCGCCGCAGGCCG
CGGCGTGCGACGCGCGCGCGGCGCTGTACGCGCTGGCTATGCTGGAGGAC
GCCGCACGCTTCCTCGGCGCGCACGTCGTCGCCGCCGCCGCCGCGGCGGA
AGCGTCCCTCGAGCCCGGCGCCGCCGCCGCATTCGCGCGCTACTTCCCGC
AGCTGCTGCGCGTCGCTGCGCATGGGGGCGGCGGCGGCGGAGGCGGCGGC
AGCGGCGGCAGTGGCGGAGGCGGAGGCGGAGGAGGAGGTGGGGGTTATGT
GCTTGCGGATGAGAGCGCTGTGCAACTCGGCGGCGGGGGGGGGGGGGCGG
TGGAGTACCGGCTGCGCGTGCGGCGCGCACACGGCGACGATTTCTTTGAG
TGCGCGGTGCGGCAGCGGCCGCAGCAGCAGCAGCAGCAGCAGCCGCTGCT
CCCGCCGCTGCCGCAGCAGCAGCAGCAGCGCCGCGCGCAGCATCAGCAGC
AGCTGCCGCCGCCACCGCAGCAGCAGTACCGATAGGATGACAGTGTGCAA
AGAGTTTGCTGTCCCTGCAGTGCGTGGTCCATTGGCCGGCTTTGTATTCT
ACACTGCACGGCAGAACTCTTGACGCACCTTGGAGCTCGGTGCCGCACAG
TGGCACATGCAGGCGTCGCGCACGATTCGCAAAGCGCGCTGCAGCACCGC
CGCTGCCGCATGTACATACATTCGTTGTGAATACAGCTGGACACACAGG
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Coding sequence (CDS) from alignment at Contig_114:146189..148187+

>mRNA_15054 ID=mRNA_15054|Name=jgi.p|Trimin1|352279|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=978bp|location=Sequence derived from alignment at Contig_114:146189..148187+ (Tribonema minus UTEX_B_3156 )
ATGCTCGCCAATGGCGAAAGCGGCCATGACCCAACTGGTAGCAACAGCCC
AGCCCCCGGACCACAGCAGGCGCCGTCAGGAGAGGATGCTTCAATGCTGG
AGCTCTGCTATGGAGGAACGCCGCAGCGCCTTCTGCTTCGAGGCCCCCCT
CGCAGCGGCAGGAGCAGCCTGCTGTTCGACCACGCCTACCGCCTGGCGCG
CAGGGGCCTGCGCGTCACCTACATCTGCATGAAAGCGCGCATCGAGAGGC
AGCTGCCCCTGCAGTGCGCCCAAGCGCAGGAGCCCCACGACGCGCCGCAG
GGCTGGGACCCGGCGGCCCTGGAGAGGATAGGCATGAAGTACGTGGCGAG
CAGGGAGGATCTGCTATGGTTTCTCGGCAGCGTCCAGATGCTGCGTAGAG
AAGCTTTCCCGTGCGCGCTGCTGGTGGACGATATCGACGTCATCCTCGGA
GCCAGCGCCATGGCGCTAGACGGCGGCATCGGCGCGCAGGCCGCGGCGTG
CGACGCGCGCGCGGCGCTGTACGCGCTGGCTATGCTGGAGGACGCCGCAC
GCTTCCTCGGCGCGCACGTCGTCGCCGCCGCCGCCGCGGCGGAAGCGTCC
CTCGAGCCCGGCGCCGCCGCCGCATTCGCGCGCTACTTCCCGCAGCTGCT
GCGCGTCGCTGCGCATGGGGGCGGCGGCGGCGGAGGCGGCGGCAGCGGCG
GCAGTGGCGGAGGCGGAGGCGGAGGAGGAGGTGGGGGTTATGTGCTTGCG
GATGAGAGCGCTGTGCAACTCGGCGGCGGGGGGGGGGGGGCGGTGGAGTA
CCGGCTGCGCGTGCGGCGCGCACACGGCGACGATTTCTTTGAGTGCGCGG
TGCGGCAGCGGCCGCAGCAGCAGCAGCAGCAGCAGCCGCTGCTCCCGCCG
CTGCCGCAGCAGCAGCAGCAGCGCCGCGCGCAGCATCAGCAGCAGCTGCC
GCCGCCACCGCAGCAGCAGTACCGATAG
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