Trimin1|352279|estExt_Genemark1.C_Ctg_1140019 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352279
Unique NameTrimin1|352279|estExt_Genemark1.C_Ctg_1140019
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length326
Homology
BLAST of jgi.p|Trimin1|352279 vs. uniprot
Match: A0A835ZEM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM9_9STRA)

HSP 1 Score: 443 bits (1139), Expect = 6.890e-154
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:    1 MLANGESGHDPTGSNSPAPGPQQAPSGEDASMLELCYGGTPQRLLLRGPPRSGRSSLLFDHAYRLARRGLRVTYICMKARIERQLPLQCAQAQEPHDAPQGWDPAALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVILGASAMALDGGIGAQAAACDARAALYALAMLEDAARFLGAHVVAXXXXXXXXXEPXXXXAFARYFPQLLRVAAHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVEYRLRVRRAHGDDFFECAVRQRPQ 289
            MLANGESGHDPTGSNSPAPGPQQAPSGEDASMLELCYGGTPQRLLLRGPPRSGRSSLLFDHAYRLARRGLRVTYICMKARIERQLPLQCAQAQEPHDAPQGWDPAALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVILGASAMALDGGIGAQAAACDARAALYALAMLEDAARFLGAHVVAXXXXXXXXXEPXXXXAFARYFPQLLRVAAHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVEYRLRVRRAHGDDFFECAVRQRPQ
Sbjct:    1 MLANGESGHDPTGSNSPAPGPQQAPSGEDASMLELCYGGTPQRLLLRGPPRSGRSSLLFDHAYRLARRGLRVTYICMKARIERQLPLQCAQAQEPHDAPQGWDPAALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVILGASAMALDGGIGAQAAACDARAALYALAMLEDAARFLGAHVVAXXXXXXXXXEPXXXXAFARYFPQLLRVAAHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVEYRLRVRRAHGDDFFECAVRQRPQ 289          
BLAST of jgi.p|Trimin1|352279 vs. uniprot
Match: A0A388K2P0_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388K2P0_CHABU)

HSP 1 Score: 65.9 bits (159), Expect = 1.020e-8
Identity = 50/150 (33.33%), Postives = 74/150 (49.33%), Query Frame = 0
Query:   42 QRLLLRGPPRSGRSSLLFDHAYRLARR-GLR--VTYICMKARIERQLPLQCAQAQEPHDAPQGWDPAA--LERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVILGASAMALDGGIGAQAAACDARAALYALAMLEDAARFL 186
            +R LL GPPRSG++SLLF   Y  AR  G R  V +IC K RIE   PL            +G DP++    R+ M+Y+   ++L  +L  + +L     P AL++D+       S+  + GG+ +        A    LA+L DA  F+
Sbjct:   35 RRALLVGPPRSGKTSLLFQFCYNCARESGSRSHVVFICQKKRIENGPPL----------LSRGVDPSSEVFNRVHMRYLVDDKELRKYLACLHLLPNSQLPTALVIDNFSAFFDQSSSHVGGGVRSAHGRAQDMAIARTLALLCDAVDFV 174          
BLAST of jgi.p|Trimin1|352279 vs. uniprot
Match: A0A3B5YV82_WHEAT (Uncharacterized protein n=11 Tax=Pooideae TaxID=147368 RepID=A0A3B5YV82_WHEAT)

HSP 1 Score: 57.8 bits (138), Expect = 4.220e-6
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 0
Query:   44 LLLRGPPRSGRSSLLFDHAY-RLARRGLRVTYICMKARIERQLPLQCAQAQEPHDAPQGWDPA--ALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDD 144
            LLL GPPR G++SLLF  A  R A  G  V +IC K R+E   P             QG +P+   L+RI +KY+   E +  +  +  +L  + FP A++VDD
Sbjct:   22 LLLSGPPRCGKTSLLFQFAINRAAESGRHVVFICSKGRLENSPPF----------LSQGVEPSLNVLQRIQIKYIEDDEGIRKYFAAFHLL--DDFPAAVIVDD 113          
BLAST of jgi.p|Trimin1|352279 vs. uniprot
Match: A0A2P6TS94_CHLSO (tRNA dimethylallyltransferase isoform A n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TS94_CHLSO)

HSP 1 Score: 56.6 bits (135), Expect = 1.450e-5
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 0
Query:   44 LLLRGPPRSGRSSLLFDHAYRLARRGLRVTYICMKARIERQLPLQCAQAQEPHDAPQGWDPAALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVI 148
            LLL GP RSG+++LLF  A  LAR+G  V  +C + ++E   PL         +  Q  DPA  ER+ +KYVA+  +LL ++  +  L     P A+LVDD+  +
Sbjct:   35 LLLSGPERSGKTTLLFHAALSLARQGASVLLLCRREKLEACPPLL-------PEGVQNSDPA-WERVHIKYVANGYELLRYVSHIHALPNGP-PDAVLVDDLHAL 130          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352279 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZEM9_9STRA6.890e-154100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A388K2P0_CHABU1.020e-833.33Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]
A0A3B5YV82_WHEAT4.220e-637.50Uncharacterized protein n=11 Tax=Pooideae TaxID=14... [more]
A0A2P6TS94_CHLSO1.450e-538.10tRNA dimethylallyltransferase isoform A n=1 Tax=Ch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 282..325
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 285..325
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..22
NoneNo IPR availablePANTHERPTHR28653FAMILY NOT NAMEDcoord: 42..221
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 41..194

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:146189..147973 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352279mRNA_15054Tribonema minus UTEX_B_3156 mRNAContig_114 146189..148187 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352279|estExt_Genemark1.C_Ctg_1140019 ID=Trimin1|352279|estExt_Genemark1.C_Ctg_1140019|Name=jgi.p|Trimin1|352279|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=326bp
MLANGESGHDPTGSNSPAPGPQQAPSGEDASMLELCYGGTPQRLLLRGPP
RSGRSSLLFDHAYRLARRGLRVTYICMKARIERQLPLQCAQAQEPHDAPQ
GWDPAALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVILG
ASAMALDGGIGAQAAACDARAALYALAMLEDAARFLGAHVVAAAAAAEAS
LEPGAAAAFARYFPQLLRVAAHGGGGGGGGGSGGSGGGGGGGGGGGYVLA
DESAVQLGGGGGGAVEYRLRVRRAHGDDFFECAVRQRPQQQQQQQPLLPP
LPQQQQQRRAQHQQQLPPPPQQQYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase