mRNA_14876 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352665
Unique NamemRNA_14876
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352665 vs. uniprot
Match: A0A835ZKC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKC7_9STRA)

HSP 1 Score: 723 bits (1865), Expect = 2.480e-258
Identity = 509/509 (100.00%), Postives = 509/509 (100.00%), Query Frame = 1 
Query:    1 MSHATNFPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLKCGTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXAFSASTMRRHRVDRGGGEVAAPLAVLCWLVQLFNHLLCVSMFASLLLNNLRSLLLXXXXXXXXXXXXXXXXXXXHLCLPPYSPELXXXXXXXXXXXXXXXXXXXXLQSLRTARHPRGSFTNGTATGALTTTGVTNDSVKLYKALVTRAVVAMIVSSAYCVXXXXXXXXXXXXXXXXXSAVQXXXXXXXXXXXXXXXXXPSQLAPANNGAVRAPHTTLMTILAIIKYDIXXXXXXXXXXXXNPTSLIPVFPLAVLDNACTLESIYFAIDLSGSAGAQQRLSISQLEAALAMSGSVNLSGTDQAEGAPKSTIVSAQV 1527
            MSHATNFPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLKCGTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXAFSASTMRRHRVDRGGGEVAAPLAVLCWLVQLFNHLLCVSMFASLLLNNLRSLLLXXXXXXXXXXXXXXXXXXXHLCLPPYSPELXXXXXXXXXXXXXXXXXXXXLQSLRTARHPRGSFTNGTATGALTTTGVTNDSVKLYKALVTRAVVAMIVSSAYCVXXXXXXXXXXXXXXXXXSAVQXXXXXXXXXXXXXXXXXPSQLAPANNGAVRAPHTTLMTILAIIKYDIXXXXXXXXXXXXNPTSLIPVFPLAVLDNACTLESIYFAIDLSGSAGAQQRLSISQLEAALAMSGSVNLSGTDQAEGAPKSTIVSAQV
Sbjct:    1 MSHATNFPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLKCGTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXAFSASTMRRHRVDRGGGEVAAPLAVLCWLVQLFNHLLCVSMFASLLLNNLRSLLLXXXXXXXXXXXXXXXXXXXHLCLPPYSPELXXXXXXXXXXXXXXXXXXXXLQSLRTARHPRGSFTNGTATGALTTTGVTNDSVKLYKALVTRAVVAMIVSSAYCVXXXXXXXXXXXXXXXXXSAVQXXXXXXXXXXXXXXXXXPSQLAPANNGAVRAPHTTLMTILAIIKYDIXXXXXXXXXXXXNPTSLIPVFPLAVLDNACTLESIYFAIDLSGSAGAQQRLSISQLEAALAMSGSVNLSGTDQAEGAPKSTIVSAQV 509
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BLAST of jgi.p|Trimin1|352665 vs. uniprot
Match: A0A835Z900_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z900_9STRA)

HSP 1 Score: 145 bits (366), Expect = 8.690e-36
Identity = 76/162 (46.91%), Postives = 100/162 (61.73%), Query Frame = 1 
Query:    1 MSHATNFPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLK 486
            M  +T F    E+++L+V  M+ LQTT AFG RY ++++A++NLTGLLAS L+LF++ WA+T+WF G+G +SC  IQVVNG+CLSSSNALA                                 ++LV VH L++   APN  LGGE RC WTFEE TFKLK
Sbjct:    1 MGTSTAFVPLFEVFALTVTLMIALQTTVAFGKRYLSRNRALLNLTGLLASFLSLFYTLWALTIWFCGIGGLSCTVIQVVNGMCLSSSNALA---------------------------------VVLVAVHTLLSGYAAPNTALGGEERCVWTFEEATFKLK 129
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BLAST of jgi.p|Trimin1|352665 vs. uniprot
Match: D7FXM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM9_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 9.370e-28
Identity = 69/158 (43.67%), Postives = 97/158 (61.39%), Query Frame = 1 
Query:   19 FPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSI-SCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRW-PVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLK 486
            F  + EI+S  V   V L T+  FG R + K  A +N+TGL AS++ + +S +A+  WF GLG +  C  +  VNG C+S+SNA  F+HLF+KADASN+ NP+W   +R   + +   NW+ L VVHAL+   E     L G  RCK+TFE  +F+LK
Sbjct:    6 FGLFFEIFSEGVVFTVALITSVCFGERCW-KRSAPLNITGLAASLIAVSYSVFALEYWFNGLGDLYDCATLAAVNGTCMSASNAFTFLHLFVKADASNQRNPKWRKFYRWVGVATTAFNWVTLAVVHALLQGTEIDG--LDGP-RCKFTFEMNSFRLK 159
[Close]
BLAST of jgi.p|Trimin1|352665 vs. uniprot
Match: A0A835Z0T7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T7_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.990e-21
Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 1 
Query:   28 YVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLK 486
            Y EI+ L++   +GLQ T  FG R+ T  + ++N TG LA+++   ++       F+G+G   C A+++  GL    SN  AF+HLFL+ADA N +NP+WP WR   I+  VANW+  + V  L   K +     G E RC + FEE +   K
Sbjct:   22 YFEIFCLAITFTIGLQVTFFFGERWLTMRRNMMNATGFLAAIIAAVYTLVKALHLFSGIGLSECNALRISLGLGQGLSNGFAFLHLFLRADAINAINPKWPPWRAVGIVLTVANWVCFLAVSFL--RKGSAIDQFGAE-RCVFYFEEISSNFK 171
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BLAST of jgi.p|Trimin1|352665 vs. uniprot
Match: A0A835ZCN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.530e-19
Identity = 50/134 (37.31%), Postives = 79/134 (58.96%), Query Frame = 1 
Query:   31 VEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSI-SCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPN 429
            +E+ +L +   + LQTT  FG+RYF+  +  +NL+  LAS L L ++ + +  WF G+G+  SC  + +V G+   + N++AF+HLFL+ADA N LN +W   R   ++ + ANW  L  V    T KE   P+
Sbjct:    5 LEVAALGMLLTISLQTTVFFGHRYFSYRRVWMNLSAFLASALGLIYAAYKLGYWFAGIGAFFSCRNVMMVGGIVQGACNSMAFLHLFLRADAINSLNSKWRYLRVVGMVLVAANWAALGAVIVDRTYKEVQGPD 138
[Close]
BLAST of jgi.p|Trimin1|352665 vs. uniprot
Match: A0A835Z9N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.290e-18
Identity = 55/156 (35.26%), Postives = 85/156 (54.49%), Query Frame = 1 
Query:   19 FPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLK 486
            F AY E   L+   ++ L+    FG R   +    +N+TG +AS++ + +    +  ++TG   +SC  ++++ G+   SSNALAF+HLFL+ADA NK+N  W  WR   I     NW  L+ V    T   A +    G  RCK+TF++ TF+ K
Sbjct:    6 FFAYFETTCLTTTFIIALEVGWFFGERCVLRKANAMNITGFMASLIAVTYCFLKLIYFYTGAEELSCDQLKIILGVGQGSSNALAFLHLFLRADAVNKINTHWRPWRWFGIALTALNWATLLAVCFTRTAVLATS----GSQRCKFTFDQSTFEAK 157
[Close]
BLAST of jgi.p|Trimin1|352665 vs. uniprot
Match: A0A835ZIT3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIT3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.270e-15
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 1 
Query:  109 KHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISC-MAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLK 486
            +H  +I+ TG LASVLT+F+  + +  ++  + S     A+  V  +  ++SNALAF+HLFL+ADA N +NP WP WR   I  +VA  I+L+ V A  + +   NP  G   RC+ ++E  +F LK
Sbjct:   26 RHPLMIHWTGFLASVLTIFYCVYELCYYYVNMASRDAHCAVFKVWIVMRTASNALAFLHLFLRADAVNAINPNWPPWRRFGIALLVATLIMLIAVAATRSARLVRNPPFG--ERCEQSYEPVSFALK 150
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BLAST of jgi.p|Trimin1|352665 vs. uniprot
Match: A0A6H5L5W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.070e-15
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:  214 SCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRW-PVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLK 486
            SC  +  VNG C+S+SNA  F+HLF+KADASN+ NP+W   +R   + +   NW+ L VVHAL+   +     L G  RCK+TFE  +F+LK
Sbjct:    3 SCTTLAAVNGTCMSASNAFTFLHLFVKADASNQRNPKWRKFYRWVGVATTAFNWVTLAVVHALLEGTQVDG--LDGP-RCKFTFEMNSFRLK 91
[Close]
BLAST of jgi.p|Trimin1|352665 vs. uniprot
Match: A0A836CG65_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG65_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.200e-12
Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 1 
Query:  124 INLTGLLASVLTLFFSTWAITLWFTGL-GSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKL 483
            I  T LLA+++ + ++TW +  ++ GL             G+  S SNALAF+HLFL+AD +N +NP W +WR   I   V NW +L+V  AL      P   LG  ARC   +E  +F L
Sbjct:   61 ITATALLAALICVVYTTWELAYFYAGLMAQPDTCKTATAWGVLRSISNALAFLHLFLRADVANSINPHWHMWRRVGIALTVINWALLIVAPALRRITLIPT-KLG--ARCSAQYESVSFTL 178
[Close]
BLAST of jgi.p|Trimin1|352665 vs. uniprot
Match: A0A835Z9W2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9W2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.250e-9
Identity = 55/165 (33.33%), Postives = 78/165 (47.27%), Query Frame = 1 
Query:    1 MSHATNFPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLASVLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCL-SSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEA---PNPNLGGE------ARCKWTFE 465
            MSHAT F        LSV+  + ++T   FG R     +  +  TG LAS+ T  +    +  +F  +   +    Q      L  +SN+LAF+HLFL+A+A N LNP+WP WR A I   V    +L +V A    K     P+P+   E      A  KWT +
Sbjct:    1 MSHAT-FDDLFTTSCLSVSCTIAVETGWFFGMRLVYGVRNAMAWTGFLASLFTAIYCVHELCYYFVDVADQTASCAQFKAFFILRGASNSLAFLHLFLRANAVNSLNPKWPPWRRAGIALTVVTLGVLALVAATRGAKPTASPPHPSRCQEFIAPIPATLKWTLQ 164
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352665 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835ZKC7_9STRA2.480e-258100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z900_9STRA8.690e-3646.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FXM9_ECTSI9.370e-2843.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z0T7_9STRA2.990e-2137.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCN3_9STRA1.530e-1937.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9N7_9STRA1.290e-1835.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZIT3_9STRA2.270e-1539.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L5W9_9PHAE4.070e-1546.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CG65_9STRA1.200e-1238.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9W2_9STRA1.250e-933.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_127contigContig_127:350115..354988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352665|estExt_Genemark1.C_Ctg_1270042
Max annot lvl2759|Eukaryota
EggNOG OGs2EKQU@1|root,2SQJE@2759|Eukaryota
Evalue1.54e-28
Seed ortholog2880.D7FXM9
Hectar predicted targeting categorysignal anchor
TranscriptId352987
TrackFilteredModels1
ProteinId352665
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352665gene_14876Tribonema minus UTEX_B_3156 geneContig_127 350115..354988 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14876_1exon_14876_1Tribonema minus UTEX_B_3156 exonContig_127 350115..350345 +
exon_14876_2exon_14876_2Tribonema minus UTEX_B_3156 exonContig_127 350456..350595 +
exon_14876_3exon_14876_3Tribonema minus UTEX_B_3156 exonContig_127 351414..351530 +
exon_14876_4exon_14876_4Tribonema minus UTEX_B_3156 exonContig_127 351660..351808 +
exon_14876_5exon_14876_5Tribonema minus UTEX_B_3156 exonContig_127 351968..351995 +
exon_14876_6exon_14876_6Tribonema minus UTEX_B_3156 exonContig_127 352569..352646 +
exon_14876_7exon_14876_7Tribonema minus UTEX_B_3156 exonContig_127 352755..352844 +
exon_14876_8exon_14876_8Tribonema minus UTEX_B_3156 exonContig_127 352925..353149 +
exon_14876_9exon_14876_9Tribonema minus UTEX_B_3156 exonContig_127 353288..353347 +
exon_14876_10exon_14876_10Tribonema minus UTEX_B_3156 exonContig_127 353729..353777 +
exon_14876_11exon_14876_11Tribonema minus UTEX_B_3156 exonContig_127 354517..354575 +
exon_14876_12exon_14876_12Tribonema minus UTEX_B_3156 exonContig_127 354633..354671 +
exon_14876_13exon_14876_13Tribonema minus UTEX_B_3156 exonContig_127 354724..354988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14876CDS_14876Tribonema minus UTEX_B_3156 CDSContig_127 350115..350345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352665Trimin1|352665|estExt_Genemark1.C_Ctg_1270042Tribonema minus UTEX_B_3156 polypeptideContig_127 350115..354988 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14876 ID=mRNA_14876|Name=jgi.p|Trimin1|352665|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1530bp|location=Sequence derived from alignment at Contig_127:350115..354988+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCACGCCACCAACTTCCCTGCATATGTAGAGATATGGTCGCTGAG
TGTTGCTCAGATGGTGGGGTTGCAAACGACAGCTGCCTTCGGATACAGGT
ACTTCACCAAGCACAAAGCGGTGATCAATCTAACGGGCCTCCTGGCAAGC
GTCCTGACTCTCTTCTTCTCCACCTGGGCCATCACGCTGTGGTTCACGGG
CCTGGGCAGCATAAGCTGCATGGCGATACAGGTTGTGAATGGACTGTGCT
TGAGCAGCAGCAATGCCTTGGCGTTCGTGCACCTGTTCCTGAAGGCGGAT
GCCAGTAACAAGTTGAATCCCAGATGGCCCGTGTGGCGCACAGCGGCGAT
CATGAGCATCGTCGCCAATTGGATTATTCTGGTGGTCGTACACGCTTTAA
TCACCACCAAAGAAGCGCCGAACCCGAACCTGGGCGGTGAGGCGCGGTGC
AAGTGGACCTTTGAGGAGTACACCTTCAAGCTCAAGTGCGGAACTGCTGC
TGGCGGTGCTGCTGCTGCCGCTGCCGCTGCTGTAACTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGCATTCAGTGCGTCGACC
ATGCGCAGACACCGCGTGGACCGCGGAGGGGGGGAGGTCGCCGCGCCGCT
GGCGGTGCTGTGCTGGCTCGTGCAGCTGTTCAACCACCTGCTGTGCGTGA
GCATGTTTGCATCGCTGCTGCTCAACAACCTCCGCTCACTGCTGCTGGTG
CAGCTGTTCAACCACCTGCTGTGCGTGAGCCTCTTTGTGTGGCCGCTGCT
CAACCACCTCTGCTTACCGCCCTACTCCCCGGAGCTCGTGCAGCTGTTCA
ACCACCTGCTCTGCGTGAGCCTGTTTGTGTGGCCGCTGCTCAACCACCTC
CAGTCGCTGCGCACGGCGCGCCACCCGCGAGGCAGCTTCACCAACGGCAC
CGCGACGGGCGCGCTCACCACCACGGGCGTCACCAACGACAGCGTCAAGC
TGTACAAGGCGCTCGTCACGCGCGCCGTCGTCGCGATGATCGTCTCGAGC
GCGTACTGCGTCCAGCTGTACAAGGCGCTCGTCACGCGCGCCGACGTTGC
CATGATCGTCTCGAGCGCCGTCCAGCTGTACAAGGCGCTCGTCACGCGCG
CCGACGTTGCCATGATCACCGCCGCCCCCTCTCAGCTGGCGCCCGCAAAC
AATGGCGCCGTTCGGGCCCCTCACACCACCCTCATGACCATCCTGGCCAT
CATCAAGTACGACATCACCCTCATGACCATCCTGGCCATCATCAGGTTCG
ATAACCCCACGAGCCTCATCCCCGTCTTCCCGCTGGCGGTTCTCGACAAC
GCGTGCACGCTCGAGTCCATCTACTTTGCGATCGACCTCTCGGGCTCCGC
GGGCGCGCAGCAGCGGCTCAGCATCAGCCAACTCGAGGCGGCGCTCGCCA
TGAGCGGCAGCGTCAACCTCTCGGGAACGGACCAGGCGGAGGGCGCGCCC
AAGTCCACCATCGTCAGCGCTCAGGTCTAG
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protein sequence of jgi.p|Trimin1|352665

>Trimin1|352665|estExt_Genemark1.C_Ctg_1270042 ID=Trimin1|352665|estExt_Genemark1.C_Ctg_1270042|Name=jgi.p|Trimin1|352665|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=510bp
MSHATNFPAYVEIWSLSVAQMVGLQTTAAFGYRYFTKHKAVINLTGLLAS
VLTLFFSTWAITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKAD
ASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARC
KWTFEEYTFKLKCGTAAGGAAAAAAAAVTAAAAAAAAAAAAAAGAFSAST
MRRHRVDRGGGEVAAPLAVLCWLVQLFNHLLCVSMFASLLLNNLRSLLLV
QLFNHLLCVSLFVWPLLNHLCLPPYSPELVQLFNHLLCVSLFVWPLLNHL
QSLRTARHPRGSFTNGTATGALTTTGVTNDSVKLYKALVTRAVVAMIVSS
AYCVQLYKALVTRADVAMIVSSAVQLYKALVTRADVAMITAAPSQLAPAN
NGAVRAPHTTLMTILAIIKYDITLMTILAIIRFDNPTSLIPVFPLAVLDN
ACTLESIYFAIDLSGSAGAQQRLSISQLEAALAMSGSVNLSGTDQAEGAP
KSTIVSAQV*
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mRNA from alignment at Contig_127:350115..354988+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14876 ID=mRNA_14876|Name=jgi.p|Trimin1|352665|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4874bp|location=Sequence derived from alignment at Contig_127:350115..354988+ (Tribonema minus UTEX_B_3156 )
ATGTCCCACGCCACCAACTTCCCTGCATATGTAGAGATATGGTCGCTGAG
TGTTGCTCAGATGGTGGGGTTGCAAACGACAGCTGCCTTCGGATACAGGT
ACTTCACCAAGCACAAAGCGGTGATCAATCTAACGGGCCTCCTGGCAAGC
GTCCTGACTCTCTTCTTCTCCACCTGGGCCATCACGCTGTGGTTCACGGG
CCTGGGCAGCATAAGCTGCATGGCGATACAGGTCAGCTCGGCCTTCATTG
AGCCGGAGCTCTCTCTTGTGAACGCATGCTCTCAAGGAGCGTTGATGTCT
GCGATCCGTGCCCTGAAGAGCGCGTTCTGTGCCGCGTGCAGGTTGTGAAT
GGACTGTGCTTGAGCAGCAGCAATGCCTTGGCGTTCGTGCACCTGTTCCT
GAAGGCGGATGCCAGTAACAAGTTGAATCCCAGATGGCCCGTGTGGCGCA
CAGCGGCGATCATGAGCATCGTCGCCAATTGGTGAGCACCTGAACAGCTA
TATTTTTTTGCATATAAGGCCATGGTGTCATTTTTGCCATATTCAGCCAT
AGTGTAAGCTGGATCAGTGACTTGACGGTGAGCCAGCTGATGACTCGCTG
TCACTGGGAATGAAGGCTTTCACTGACGAAGGCACAGCCAAACAGACACA
GATGCAACATGTCAGGCAGACGAGGGCACCTGTCGATTCGACAGGTTGCT
CACTATTACAACTTGTGCAGCGCTTGCGTCGCAGTGCAGCAGCTACACAT
CTTGCGTAGATGTGCCCACGCCTGATTGCCTGCGAGTGCTACCTAGTGTG
TCCCACGCGGTGTGCGCAACGACCAGCACGTTGGCTCTACAGAGTTGTAT
AGACGGCAGTAGGCTGCATGCAACGCCAATGTATGCACACACTCGCTTTG
CTTAGGTGGACCCTACCCCTAGGGTATGGGCCGTCTAATCCAATATGCTG
TGCCAGTGAAATGACGCAACGTGTGTTGGCATGACCACTTCACTCGGATC
CGGGTTGCATGGTCTGATTTTGTGCAGAAGTCGCGTGTGTTGTGGACGCG
TGCTTTGATCTCACACAAGCAGTTCACTCACCTCCAGTACATGACACTGT
AGTGATTAAAGCACATAGTTATGCGAAGGTCCTGTGATTCGCTTCAGCCT
TGGTTCAGGCCGAGATTACCTATGCCCACGGCACAATCCTCATGTTCCTT
ATTGCCGCCGGTGAGCCATGTCCCCTCTGCCCGCCTTCGATATCTCGCTT
CAGCTGACCTGTGACGTGCCTGTGGAATCCACAACGTGCCAATTAACAGG
ATTATTCTGGTGGTCGTACACGCTTTAATCACCACCAAAGAAGCGCCGAA
CCCGAACCTGGGCGGTGAGGCGCGGTGCAAGTGGACCTTTGAGGAGTACA
CCTTCAAGCTCAAGTGGTGCGTCCCCCCAACTGCAAGTTGAACTTGTGCA
CGACGTTTTGCAGTTGCGTGGGCACTGTTGCTGCTGCTGCGTGTTTTGCC
GCTTGCTGGTCACGAATGTGCGCGTCATGTGCCTGAGCTCGGCAGCGGAA
CTGCTGCTGGCGGTGCTGCTGCTGCCGCTGCCGCTGCTGTAACTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGCATTCAGTGC
GTCGACCATGCGCAGACACCGCGTGGACCGCGGAGGGGGGGAGGGTGGGG
GGGGGTCGCTGGCGCTTGTTGCGCGGCCGTCAGCTGCAGTGACCAAGCTC
AACCCTAGCATACCACTGTTGTCTACCGAGCGCTGATGCACAGCTTGCGT
CAGCTTGTGCGTTATGAGGCCCCTCGCGTGCGCAATGCCCCCGCCGCCTG
CAGTCGCCGCGCCGCTGGCGGTGCTGTGCTGGTAGGCTCGGAGCTTTGCC
GACAATAGGCTCACGGCTGCGTTGGTCTGGGTCGTATCTGGGGGGTGCAG
CTGATGAACCACACGCTGCTCGCAAGCGATTTTGTGTTGCCGCTGCTGCA
CCACCTCTCCTCAGAGTGTGATCGACTGCTCACTGCAGTCCAGCTGACGG
GCAGTCTGTGTACTTGGGGTTCAGGGGTTTTCGGTCTAGCCCTAAATGTA
ACCCCAAAGTCGCTCCCATGCAGGCTGGTGCAGCTGTTCAATCGCCTGTT
GTGCGTGAGCCTCTCTTTGTGTGGCCGCTGCTCGACCACCTCCGCTCACT
GCTCTTGCCCTCAAACCTTGACGGAATACTCACCGCAGTTCAGCCTATAG
GCGACTCATGTGCACCCCTCGTCTGTCGCTCGTACGCCTGCAGGCTCGTG
CAGCTGTTAAACCACCTGCTGTGCGTGAGCCTTTTTGTCTGACCCCTGCT
CGACAACCTCTGCTCACTGCTCTCATCAAACTGTGACTGAGTGCTTACTG
CAGTATAGCTGACAGGCAATCTATGCACACCCCATGGCTGTTGCTCTCAC
GCAGGCTCGTGCAGCTGTTCAACCACCTGCTGTGCGTGAGCATGTTTGCA
TCGCTGCTGCTCAACAACCTCCGCTCACTGCTGTCACCCTCAAACCCTGA
CAGAATATTCACTGCAATTCAGGCAGCAGGCGACTAACGCACACGCCCCG
TGGCTGTCGCTCGCTCTCGCTGTCAATCGGTCTCGCGCAGGCTGGTGCAG
CTGTTCAACCACCTGCTGTGCGTGAGCCTCTTTGTGTGGCCGCTGCTCAA
CCACCTCTGCTTACCGCCCTACTCCCCGGAGTTGAATTGACTGCTCACTG
CAGGTTAGCTGACAGGCATTCTATGCATACCCCATGGCTGTCGCTGTTGC
TCTCGCGCAGGCTCGTGCAGCTGTTCAACCACCTGCTCTGCGTGAGCCTG
TTTGTGTGGCCGCTGCTCAACCACCTCCAGTCGCTGCGCACGGCGCGCCA
CCCGCGAGGCAGCTTCACCAACGGCACCGCGACGGGCGCGCTCACCACCA
CGGGCGTCACCAACGACAGCGTCAAGCTGTACAAGGCGCTCGTCACGCGC
GCCGTCGTCGCGATGATCGTCTCGAGCGCGTACTGGTGAGTGCTGCTGCA
ACTTTGCTGTTGAAACGTGCGGGATTGTCATTGAACAAGAACGCTGCGTA
TCAATTGAGTCGGTGATCAGTACCCATTTCTGCAGCTCGTGGGGTCGCCA
ACAGTACACTGCACTAACGACAGCGTCCAGCTGTACAAGGCGCTCGTCAC
GCGCGCCGACGTTGCCATGATCGTCTCGAGCGCGTAGTGGTGAGCGCTGC
TGCAACTTTACTGTTGAAACGTGCGGGTTCGTCGTCAGAGCATGAGCGGT
GCGACCGGCTGCTGATGCGTGCGTCGGCAGCAGGTGTTGCTGCCTGGGTC
TGCCACCTGCATTGCGTGGATCGCCCCGACACAATTGCGCCGTTTGTGAC
AATCGAAGGCTGAATGATCGTCATAGATCAGGATCATCAGAGATCAGGAT
TGCTTCAACGAGTCGGTGATCAGTAGCTGCGGTGTGCACGCCTGCGTCTG
TTGAAACGTGCGGGATTGTCATTGAACAAGAACGCTGCGTATCAATTGAG
TCGGTGATCAGTACCCATTTCTGCAGCTCGTGGGGTCGCCAACAGTACAC
TGCACTAACGACAGCGTCCAGCTGTACAAGGCGCTCGTCACGCGCGCCGA
CGTTGCCATGATCGTCTCGAGCGCGTAGTGGTGAGCGCTGCTGCAACTTT
ACTGTTGAAACGTGCGGGTTCGTCGTCAGAGCATGAGCGGTGCGACCGGC
TGCTGATGCGTGCGTCGGCAGCAGGTGTTGCTGCCTGGGTCTGCCACCTG
CATTGCGTGGATCGCCCCGACACAATTGCGCCGTTTGTGACAATCGAAGG
CTGAATGATCGTCATAGATCAGGATCATCAGAGATCAGGATTGCTTCAAC
GAGTCGGTGATCAGTAGCTGCGGTGTGCACGCCTGCGTCGGCGCTGAGGC
CCGCTCACCCGGCCCGCTGTTCGATCAGCATCCGTGTCAGGCTTCCAGAC
GTGCGCTTCTAAGAAGTACTGAAGAGAGCGCTCGCGGCAGAACAAGGAGC
TCGGTGCTGCGCGCCGCAAGGTGCGCGAGGCGCTTCTGATGCGCGCCATC
TTCGCTACCTAAGTTGGTGACGGACGGCGCATCGCTGAGCTCCGTTCATT
CATGGGCGGGTCATAGTCCGCTGCTGCGCTTCGCGAGCATCGGGTCTTTG
CGTTGCAGTCACCCCGGCGCCTCCTGCGTGTAGTCGTAATTGAGCGCCGT
GCGCCATGGCCTGTGTTCCGTCCTGCACTGTAGCGCGATGTGCGAAAGAG
TGGAGCCAATGCTTGAGGAGAGAGGGGCGAGTGCTAAGACGGGGGGCGTC
CCAAATTCCGATGCGCAACTTCAACTTCCGATGCCCACCGTCCGACGCGC
AGACCGCCGCCCCCTCTCAGCTGGCGCCCGCAAACAATGGCGCCGTTCGG
GCCCCTCACACGTCAGTGCTCAATTCTGCGCTTCCCCCGCCGCCGCTGTT
GTGCGCCGCCGCCTGCAGCACCCTCATGACCATCCTGGCCATCATCAAGT
ACGACATGTCAGTGCTCAACCCTGCGCCCCCCCCCCCCCCCTCCTCCCCC
CCCGTGCAGCACCCTCATGACCATCCTGGCCATCATCAGGTTCGATAACC
CCACGAGCCTCATCCCCGTCTTCCCGCTGGCGGTTCTCGACAACGCGTGC
ACGCTCGAGTCCATCTACTTTGCGATCGACCTCTCGGGCTCCGCGGGCGC
GCAGCAGCGGCTCAGCATCAGCCAACTCGAGGCGGCGCTCGCCATGAGCG
GCAGCGTCAACCTCTCGGGAACGGACCAGGCGGAGGGCGCGCCCAAGTCC
ACCATCGTCAGCGCTCAGGTCTAG
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Coding sequence (CDS) from alignment at Contig_127:350115..354988+

>mRNA_14876 ID=mRNA_14876|Name=jgi.p|Trimin1|352665|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1530bp|location=Sequence derived from alignment at Contig_127:350115..354988+ (Tribonema minus UTEX_B_3156 )
ATGTCCCACGCCACCAACTTCCCTGCATATGTAGAGATATGGTCGCTGAG
TGTTGCTCAGATGGTGGGGTTGCAAACGACAGCTGCCTTCGGATACAGGT
ACTTCACCAAGCACAAAGCGGTGATCAATCTAACGGGCCTCCTGGCAAGC
GTCCTGACTCTCTTCTTCTCCACCTGGGCCATCACGCTGTGGTTCACGGG
CCTGGGCAGCATAAGCTGCATGGCGATACAGGTTGTGAATGGACTGTGCT
TGAGCAGCAGCAATGCCTTGGCGTTCGTGCACCTGTTCCTGAAGGCGGAT
GCCAGTAACAAGTTGAATCCCAGATGGCCCGTGTGGCGCACAGCGGCGAT
CATGAGCATCGTCGCCAATTGGATTATTCTGGTGGTCGTACACGCTTTAA
TCACCACCAAAGAAGCGCCGAACCCGAACCTGGGCGGTGAGGCGCGGTGC
AAGTGGACCTTTGAGGAGTACACCTTCAAGCTCAAGTGCGGAACTGCTGC
TGGCGGTGCTGCTGCTGCCGCTGCCGCTGCTGTAACTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGCATTCAGTGCGTCGACC
ATGCGCAGACACCGCGTGGACCGCGGAGGGGGGGAGGTCGCCGCGCCGCT
GGCGGTGCTGTGCTGGCTCGTGCAGCTGTTCAACCACCTGCTGTGCGTGA
GCATGTTTGCATCGCTGCTGCTCAACAACCTCCGCTCACTGCTGCTGGTG
CAGCTGTTCAACCACCTGCTGTGCGTGAGCCTCTTTGTGTGGCCGCTGCT
CAACCACCTCTGCTTACCGCCCTACTCCCCGGAGCTCGTGCAGCTGTTCA
ACCACCTGCTCTGCGTGAGCCTGTTTGTGTGGCCGCTGCTCAACCACCTC
CAGTCGCTGCGCACGGCGCGCCACCCGCGAGGCAGCTTCACCAACGGCAC
CGCGACGGGCGCGCTCACCACCACGGGCGTCACCAACGACAGCGTCAAGC
TGTACAAGGCGCTCGTCACGCGCGCCGTCGTCGCGATGATCGTCTCGAGC
GCGTACTGCGTCCAGCTGTACAAGGCGCTCGTCACGCGCGCCGACGTTGC
CATGATCGTCTCGAGCGCCGTCCAGCTGTACAAGGCGCTCGTCACGCGCG
CCGACGTTGCCATGATCACCGCCGCCCCCTCTCAGCTGGCGCCCGCAAAC
AATGGCGCCGTTCGGGCCCCTCACACCACCCTCATGACCATCCTGGCCAT
CATCAAGTACGACATCACCCTCATGACCATCCTGGCCATCATCAGGTTCG
ATAACCCCACGAGCCTCATCCCCGTCTTCCCGCTGGCGGTTCTCGACAAC
GCGTGCACGCTCGAGTCCATCTACTTTGCGATCGACCTCTCGGGCTCCGC
GGGCGCGCAGCAGCGGCTCAGCATCAGCCAACTCGAGGCGGCGCTCGCCA
TGAGCGGCAGCGTCAACCTCTCGGGAACGGACCAGGCGGAGGGCGCGCCC
AAGTCCACCATCGTCAGCGCTCAGGTCTAG
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