mRNA_14872 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352662
Unique NamemRNA_14872
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352662 vs. uniprot
Match: A0A835ZE08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE08_9STRA)

HSP 1 Score: 371 bits (953), Expect = 5.240e-130
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 
Query:    1 MPLTNEDDVMLLLQEINLDLHRWTVHKAEGQGLLSELSNASLSRSFVSDTSSAWGPLAGTSVPGTVALKLEAKVCKLQLDLQGVVTNLAGCAKSVIDTAAQLQEQHGGGADGWHNGGYSAADIAQAALALGRMLEREVAVAEAVCADAGDCSSRDTLTLYAAAWMMQPYMERGLWKDLLRMTETGKPGR 567
            MPLTNEDDVMLLLQEINLDLHRWTVHKAEGQGLLSELSNASLSRSFVSDTSSAWGPLAGTSVPGTVALKLEAKVCKLQLDLQGVVTNLAGCAKSVIDTAAQLQEQHGGGADGWHNGGYSAADIAQAALALGRMLEREVAVAEAVCADAGDCSSRDTLTLYAAAWMMQPYMERGLWKDLLRMTETGKPGR
Sbjct:    1 MPLTNEDDVMLLLQEINLDLHRWTVHKAEGQGLLSELSNASLSRSFVSDTSSAWGPLAGTSVPGTVALKLEAKVCKLQLDLQGVVTNLAGCAKSVIDTAAQLQEQHGGGADGWHNGGYSAADIAQAALALGRMLEREVAVAEAVCADAGDCSSRDTLTLYAAAWMMQPYMERGLWKDLLRMTETGKPGR 189
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BLAST of jgi.p|Trimin1|352662 vs. uniprot
Match: A0A835ZCP9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCP9_9STRA)

HSP 1 Score: 269 bits (688), Expect = 1.900e-89
Identity = 141/172 (81.98%), Postives = 147/172 (85.47%), Query Frame = 1 
Query:    1 MPLTNEDDVMLLLQEINLDLHRWTVHKAEGQGLLSELSNASLSRSFVSDTSSAWGPLAGTSVPGTVALKLEAKVCKLQLDLQGVVTNLAGCAKSVIDTAAQLQEQHGGGADGWHNGGYSAADIAQAALALGRMLEREVAVAEAVCADAGDCSSRDTLTLYAAAWMMQPYMER 516
            MPLTNEDDV++LLQEINLDLHRWTVHKAEGQ +                     GPLAGTSVPGTVALKLEAKVCKLQLDLQGVVTNLAGCAKS IDTAAQLQEQHGGGADGWHNGGYSAADIAQAALALGRML+REVAVAEAVCADAGDCSSRDTLTLYAAAWMMQP + +
Sbjct:    1 MPLTNEDDVLMLLQEINLDLHRWTVHKAEGQRV---------------------GPLAGTSVPGTVALKLEAKVCKLQLDLQGVVTNLAGCAKSAIDTAAQLQEQHGGGADGWHNGGYSAADIAQAALALGRMLKREVAVAEAVCADAGDCSSRDTLTLYAAAWMMQPTISK 151
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352662 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZE08_9STRA5.240e-130100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCP9_9STRA1.900e-8981.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_127contigContig_127:336000..336569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352662|estExt_Genemark1.C_Ctg_1270039
Max annot lvl121069|Pythiales
EggNOG OGs2CS7G@1|root,2RAQU@2759|Eukaryota,1MI0K@121069|Pythiales
Evalue0.000832
Seed ortholog115417.EPrPW00000017211
Hectar predicted targeting categoryother localisation
TranscriptId352984
TrackFilteredModels1
ProteinId352662
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352662gene_14872Tribonema minus UTEX_B_3156 geneContig_127 336000..336569 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14872_1exon_14872_1Tribonema minus UTEX_B_3156 exonContig_127 336000..336569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14872CDS_14872Tribonema minus UTEX_B_3156 CDSContig_127 336000..336569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352662Trimin1|352662|estExt_Genemark1.C_Ctg_1270039Tribonema minus UTEX_B_3156 polypeptideContig_127 336000..336569 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14872 ID=mRNA_14872|Name=jgi.p|Trimin1|352662|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=570bp|location=Sequence derived from alignment at Contig_127:336000..336569+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTGACCAATGAGGACGACGTGATGCTGCTGCTGCAGGAGATCAA
CCTCGATCTGCATCGGTGGACGGTACACAAGGCTGAAGGGCAGGGCCTGC
TGTCCGAGCTGTCTAACGCCAGCCTCAGCCGCAGCTTTGTTTCGGACACC
AGCAGCGCGTGGGGGCCTCTGGCGGGCACATCTGTGCCTGGCACAGTGGC
GCTGAAGCTGGAGGCGAAAGTCTGCAAGCTGCAGCTGGACCTGCAGGGCG
TAGTTACGAATCTTGCAGGATGTGCAAAGAGCGTGATCGACACTGCAGCG
CAGCTGCAGGAGCAGCACGGCGGCGGTGCAGATGGCTGGCATAATGGCGG
CTACAGTGCCGCGGACATCGCCCAGGCGGCGCTGGCGCTCGGACGCATGC
TGGAGCGCGAGGTGGCTGTCGCCGAGGCGGTGTGCGCTGACGCTGGTGAC
TGTTCCAGCCGCGACACGCTGACTCTGTATGCAGCGGCGTGGATGATGCA
GCCGTATATGGAGCGGGGGCTGTGGAAGGATTTGCTCAGAATGACAGAAA
CCGGCAAGCCCGGCCGCTGA
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protein sequence of jgi.p|Trimin1|352662

>Trimin1|352662|estExt_Genemark1.C_Ctg_1270039 ID=Trimin1|352662|estExt_Genemark1.C_Ctg_1270039|Name=jgi.p|Trimin1|352662|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=190bp
MPLTNEDDVMLLLQEINLDLHRWTVHKAEGQGLLSELSNASLSRSFVSDT
SSAWGPLAGTSVPGTVALKLEAKVCKLQLDLQGVVTNLAGCAKSVIDTAA
QLQEQHGGGADGWHNGGYSAADIAQAALALGRMLEREVAVAEAVCADAGD
CSSRDTLTLYAAAWMMQPYMERGLWKDLLRMTETGKPGR*
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mRNA from alignment at Contig_127:336000..336569+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14872 ID=mRNA_14872|Name=jgi.p|Trimin1|352662|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=570bp|location=Sequence derived from alignment at Contig_127:336000..336569+ (Tribonema minus UTEX_B_3156 )
ATGCCGCTGACCAATGAGGACGACGTGATGCTGCTGCTGCAGGAGATCAA
CCTCGATCTGCATCGGTGGACGGTACACAAGGCTGAAGGGCAGGGCCTGC
TGTCCGAGCTGTCTAACGCCAGCCTCAGCCGCAGCTTTGTTTCGGACACC
AGCAGCGCGTGGGGGCCTCTGGCGGGCACATCTGTGCCTGGCACAGTGGC
GCTGAAGCTGGAGGCGAAAGTCTGCAAGCTGCAGCTGGACCTGCAGGGCG
TAGTTACGAATCTTGCAGGATGTGCAAAGAGCGTGATCGACACTGCAGCG
CAGCTGCAGGAGCAGCACGGCGGCGGTGCAGATGGCTGGCATAATGGCGG
CTACAGTGCCGCGGACATCGCCCAGGCGGCGCTGGCGCTCGGACGCATGC
TGGAGCGCGAGGTGGCTGTCGCCGAGGCGGTGTGCGCTGACGCTGGTGAC
TGTTCCAGCCGCGACACGCTGACTCTGTATGCAGCGGCGTGGATGATGCA
GCCGTATATGGAGCGGGGGCTGTGGAAGGATTTGCTCAGAATGACAGAAA
CCGGCAAGCCCGGCCGCTGA
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Coding sequence (CDS) from alignment at Contig_127:336000..336569+

>mRNA_14872 ID=mRNA_14872|Name=jgi.p|Trimin1|352662|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=570bp|location=Sequence derived from alignment at Contig_127:336000..336569+ (Tribonema minus UTEX_B_3156 )
ATGCCGCTGACCAATGAGGACGACGTGATGCTGCTGCTGCAGGAGATCAA
CCTCGATCTGCATCGGTGGACGGTACACAAGGCTGAAGGGCAGGGCCTGC
TGTCCGAGCTGTCTAACGCCAGCCTCAGCCGCAGCTTTGTTTCGGACACC
AGCAGCGCGTGGGGGCCTCTGGCGGGCACATCTGTGCCTGGCACAGTGGC
GCTGAAGCTGGAGGCGAAAGTCTGCAAGCTGCAGCTGGACCTGCAGGGCG
TAGTTACGAATCTTGCAGGATGTGCAAAGAGCGTGATCGACACTGCAGCG
CAGCTGCAGGAGCAGCACGGCGGCGGTGCAGATGGCTGGCATAATGGCGG
CTACAGTGCCGCGGACATCGCCCAGGCGGCGCTGGCGCTCGGACGCATGC
TGGAGCGCGAGGTGGCTGTCGCCGAGGCGGTGTGCGCTGACGCTGGTGAC
TGTTCCAGCCGCGACACGCTGACTCTGTATGCAGCGGCGTGGATGATGCA
GCCGTATATGGAGCGGGGGCTGTGGAAGGATTTGCTCAGAATGACAGAAA
CCGGCAAGCCCGGCCGCTGA
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