mRNA_14862 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129977
Unique NamemRNA_14862
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A835ZFY5_9STRA (PHD-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFY5_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.110e-35
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRHGTEVADWACFEC 153
            NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRHGTEVADWACFEC
Sbjct:    1 NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRHGTEVADWACFEC 51
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BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: D8UEW1_VOLCA (PHD-type domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UEW1_VOLCA)

HSP 1 Score: 60.5 bits (145), Expect = 1.320e-10
Identity = 26/52 (50.00%), Postives = 30/52 (57.69%), Query Frame = 1 
Query:    1 NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGR-HGTEVADWACFEC 153
            N   DG    CVLC  GG+L+CC+ CP AYH RC+G   H     DW C EC
Sbjct:    9 NAFDDGNTENCVLCGVGGSLICCDRCPAAYHLRCIGQTAHSIPDGDWLCPEC 60
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BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A8J4DHT9_9CHLO (Uncharacterized protein (Fragment) n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4DHT9_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 1.870e-10
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGR-HGTEVADWACFEC 153
            N   DG    CVLC  GG+L+CC+HCP AYH RC+G   H     DW+C EC
Sbjct:  425 NAFDDGNSENCVLCGVGGSLICCDHCPAAYHLRCIGQTGHSIPDGDWSCPEC 476
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BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: E1ZHC8_CHLVA (PHD-type domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZHC8_CHLVA)

HSP 1 Score: 57.8 bits (138), Expect = 4.410e-10
Identity = 26/49 (53.06%), Postives = 29/49 (59.18%), Query Frame = 1 
Query:   10 ADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRHGTEVAD-WACFEC 153
            +D     CVLC  GG+LVCC+ CP AYH RCVG  H    A  W C EC
Sbjct:    2 SDANADVCVLCGIGGSLVCCDACPAAYHVRCVGESHRVAGASRWLCPEC 50
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BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A8J4AK52_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AK52_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 1.220e-9
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:    1 NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGR-HGTEVADWACFEC 153
            N   DG    CVLC  GG+L+CC+HCP AYH RC+    H     DW+C EC
Sbjct:  425 NAFDDGNSENCVLCGVGGSLICCDHCPAAYHLRCISQTAHSIPDGDWSCPEC 476
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BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A835T1N8_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T1N8_CHLIN)

HSP 1 Score: 59.7 bits (143), Expect = 4.280e-9
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:   13 DGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRH-GTEVADWACFEC 153
            DG    CVLC +GG+L+CC+ CP AYH RC+G  H      +W C EC
Sbjct:  754 DGNTENCVLCGQGGSLLCCDRCPAAYHMRCIGETHRSVPEGEWRCPEC 801
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BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A835WCW9_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WCW9_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 3.830e-8
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:   13 DGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRH-GTEVADWACFEC 153
            DG    CVLC +GG+L+CC+ CP AYH RC+G  +      +W C EC
Sbjct:  763 DGNTENCVLCGQGGSLLCCDRCPAAYHMRCIGETNRSVPEGEWRCPEC 810
[Close]
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A5J4Y0D1_9CHLO (Enhancer of isoform C n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y0D1_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 2.490e-7
Identity = 23/50 (46.00%), Postives = 29/50 (58.00%), Query Frame = 1 
Query:    7 DADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGR-HGTEVADWACFEC 153
            + DG    CVLC  GG+L+CC+ CP AYH RC+G         +W C EC
Sbjct:  416 EDDGNTDLCVLCGLGGSLLCCDGCPAAYHMRCIGETAKSIPEGEWLCPEC 465
[Close]
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: R1B8J4_EMIHU (PHD-type domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B8J4_EMIHU)

HSP 1 Score: 52.8 bits (125), Expect = 2.890e-7
Identity = 24/54 (44.44%), Postives = 30/54 (55.56%), Query Frame = 1 
Query:    4 VDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRHGTEVAD----WACFEC 153
            V+ DG    C +C+ GG LVCCE CP+AYHA C+G     E  +    W C  C
Sbjct:   79 VEEDGNFDTCAVCDGGGLLVCCEACPQAYHAACLGEEAPPEEEEEGQAWFCPPC 132
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BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A4D9C4P4_SALSN (Uncharacterized protein n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9C4P4_SALSN)

HSP 1 Score: 54.3 bits (129), Expect = 3.410e-7
Identity = 25/49 (51.02%), Postives = 28/49 (57.14%), Query Frame = 1 
Query:   10 ADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGG-RHGTEVADWACFEC 153
            ADG    C LC   G L+CC+ CP A+HARCVG       V DW C EC
Sbjct:  462 ADGNGDECYLCKTDGNLICCDGCPAAFHARCVGVVTSQLPVGDWICPEC 510
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFY5_9STRA4.110e-35100.00PHD-type domain-containing protein (Fragment) n=1 ... [more]
D8UEW1_VOLCA1.320e-1050.00PHD-type domain-containing protein n=1 Tax=Volvox ... [more]
A0A8J4DHT9_9CHLO1.870e-1051.92Uncharacterized protein (Fragment) n=3 Tax=Volvox ... [more]
E1ZHC8_CHLVA4.410e-1053.06PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A8J4AK52_9CHLO1.220e-950.00Uncharacterized protein n=2 Tax=Volvox africanus T... [more]
A0A835T1N8_CHLIN4.280e-950.00Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A835WCW9_9CHLO3.830e-847.92Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A5J4Y0D1_9CHLO2.490e-746.00Enhancer of isoform C n=1 Tax=Trebouxia sp. A1-2 T... [more]
R1B8J4_EMIHU2.890e-744.44PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A4D9C4P4_SALSN3.410e-751.02Uncharacterized protein n=2 Tax=Salvia splendens T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_127contigContig_127:265116..265268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129977|gw1.127.9.1
BRITEko00000,ko01000,ko01009,ko03036,ko04121
KEGG koko:K11446,ko:K11797,ko:K11798
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005102,GO:0005125,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010469,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030545,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048018,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0098772,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Preferred nameCTF1
Descriptiondemethylase
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0553@1|root,COG2319@1|root,KOG1633@1|root,KOG0383@2759|Eukaryota,KOG0644@2759|Eukaryota,KOG1633@2759|Eukaryota
Evalue1.4e-15
Seed ortholog2880.D7FZH6
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId130299
TrackFilteredModels1
ProteinId129977
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129977gene_14862Tribonema minus UTEX_B_3156 geneContig_127 265116..265268 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14862_1exon_14862_1Tribonema minus UTEX_B_3156 exonContig_127 265116..265268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14862CDS_14862Tribonema minus UTEX_B_3156 CDSContig_127 265116..265268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129977Trimin1|129977|gw1.127.9.1Tribonema minus UTEX_B_3156 polypeptideContig_127 265116..265268 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14862 ID=mRNA_14862|Name=jgi.p|Trimin1|129977|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=153bp|location=Sequence derived from alignment at Contig_127:265116..265268+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AATGTGGACGCCGACGGCGTCGTCTTCGCGTGCGTCCTGTGCAACCGCGG
CGGCACGCTCGTCTGCTGCGAGCACTGCCCGCGCGCGTACCACGCGCGCT
GCGTCGGCGGGCGCCACGGCACGGAGGTCGCCGACTGGGCGTGCTTCGAG
TGC
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protein sequence of jgi.p|Trimin1|129977

>Trimin1|129977|gw1.127.9.1 ID=Trimin1|129977|gw1.127.9.1|Name=jgi.p|Trimin1|129977|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=51bp
NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRHGTEVADWACFE
C
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mRNA from alignment at Contig_127:265116..265268+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14862 ID=mRNA_14862|Name=jgi.p|Trimin1|129977|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=153bp|location=Sequence derived from alignment at Contig_127:265116..265268+ (Tribonema minus UTEX_B_3156 )
AATGTGGACGCCGACGGCGTCGTCTTCGCGTGCGTCCTGTGCAACCGCGG
CGGCACGCTCGTCTGCTGCGAGCACTGCCCGCGCGCGTACCACGCGCGCT
GCGTCGGCGGGCGCCACGGCACGGAGGTCGCCGACTGGGCGTGCTTCGAG
TGC
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Coding sequence (CDS) from alignment at Contig_127:265116..265268+

>mRNA_14862 ID=mRNA_14862|Name=jgi.p|Trimin1|129977|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=153bp|location=Sequence derived from alignment at Contig_127:265116..265268+ (Tribonema minus UTEX_B_3156 )
AATGTGGACGCCGACGGCGTCGTCTTCGCGTGCGTCCTGTGCAACCGCGG
CGGCACGCTCGTCTGCTGCGAGCACTGCCCGCGCGCGTACCACGCGCGCT
GCGTCGGCGGGCGCCACGGCACGGAGGTCGCCGACTGGGCGTGCTTCGAG
TGC
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