Trimin1|129977|gw1.127.9.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|129977
Unique NameTrimin1|129977|gw1.127.9.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length51
Homology
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A835ZFY5_9STRA (PHD-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFY5_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.110e-35
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0
Query:    1 NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRHGTEVADWACFEC 51
            NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRHGTEVADWACFEC
Sbjct:    1 NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRHGTEVADWACFEC 51          
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: D8UEW1_VOLCA (PHD-type domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UEW1_VOLCA)

HSP 1 Score: 60.5 bits (145), Expect = 1.320e-10
Identity = 26/52 (50.00%), Postives = 30/52 (57.69%), Query Frame = 0
Query:    1 NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGR-HGTEVADWACFEC 51
            N   DG    CVLC  GG+L+CC+ CP AYH RC+G   H     DW C EC
Sbjct:    9 NAFDDGNTENCVLCGVGGSLICCDRCPAAYHLRCIGQTAHSIPDGDWLCPEC 60          
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A8J4DHT9_9CHLO (Uncharacterized protein (Fragment) n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4DHT9_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 1.870e-10
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 0
Query:    1 NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGR-HGTEVADWACFEC 51
            N   DG    CVLC  GG+L+CC+HCP AYH RC+G   H     DW+C EC
Sbjct:  425 NAFDDGNSENCVLCGVGGSLICCDHCPAAYHLRCIGQTGHSIPDGDWSCPEC 476          
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: E1ZHC8_CHLVA (PHD-type domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZHC8_CHLVA)

HSP 1 Score: 57.8 bits (138), Expect = 4.410e-10
Identity = 26/49 (53.06%), Postives = 29/49 (59.18%), Query Frame = 0
Query:    4 ADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRHGTEVAD-WACFEC 51
            +D     CVLC  GG+LVCC+ CP AYH RCVG  H    A  W C EC
Sbjct:    2 SDANADVCVLCGIGGSLVCCDACPAAYHVRCVGESHRVAGASRWLCPEC 50          
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A8J4AK52_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AK52_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 1.220e-9
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 0
Query:    1 NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGR-HGTEVADWACFEC 51
            N   DG    CVLC  GG+L+CC+HCP AYH RC+    H     DW+C EC
Sbjct:  425 NAFDDGNSENCVLCGVGGSLICCDHCPAAYHLRCISQTAHSIPDGDWSCPEC 476          
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A835T1N8_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T1N8_CHLIN)

HSP 1 Score: 59.7 bits (143), Expect = 4.280e-9
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 0
Query:    5 DGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRH-GTEVADWACFEC 51
            DG    CVLC +GG+L+CC+ CP AYH RC+G  H      +W C EC
Sbjct:  754 DGNTENCVLCGQGGSLLCCDRCPAAYHMRCIGETHRSVPEGEWRCPEC 801          
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A835WCW9_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WCW9_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 3.830e-8
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0
Query:    5 DGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRH-GTEVADWACFEC 51
            DG    CVLC +GG+L+CC+ CP AYH RC+G  +      +W C EC
Sbjct:  763 DGNTENCVLCGQGGSLLCCDRCPAAYHMRCIGETNRSVPEGEWRCPEC 810          
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A5J4Y0D1_9CHLO (Enhancer of isoform C n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y0D1_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 2.490e-7
Identity = 23/50 (46.00%), Postives = 29/50 (58.00%), Query Frame = 0
Query:    3 DADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGR-HGTEVADWACFEC 51
            + DG    CVLC  GG+L+CC+ CP AYH RC+G         +W C EC
Sbjct:  416 EDDGNTDLCVLCGLGGSLLCCDGCPAAYHMRCIGETAKSIPEGEWLCPEC 465          
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: R1B8J4_EMIHU (PHD-type domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B8J4_EMIHU)

HSP 1 Score: 52.8 bits (125), Expect = 2.890e-7
Identity = 24/54 (44.44%), Postives = 30/54 (55.56%), Query Frame = 0
Query:    2 VDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRHGTEVAD----WACFEC 51
            V+ DG    C +C+ GG LVCCE CP+AYHA C+G     E  +    W C  C
Sbjct:   79 VEEDGNFDTCAVCDGGGLLVCCEACPQAYHAACLGEEAPPEEEEEGQAWFCPPC 132          
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Match: A0A4D9C4P4_SALSN (Uncharacterized protein n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9C4P4_SALSN)

HSP 1 Score: 54.3 bits (129), Expect = 3.410e-7
Identity = 25/49 (51.02%), Postives = 28/49 (57.14%), Query Frame = 0
Query:    4 ADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGG-RHGTEVADWACFEC 51
            ADG    C LC   G L+CC+ CP A+HARCVG       V DW C EC
Sbjct:  462 ADGNGDECYLCKTDGNLICCDGCPAAFHARCVGVVTSQLPVGDWICPEC 510          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129977 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFY5_9STRA4.110e-35100.00PHD-type domain-containing protein (Fragment) n=1 ... [more]
D8UEW1_VOLCA1.320e-1050.00PHD-type domain-containing protein n=1 Tax=Volvox ... [more]
A0A8J4DHT9_9CHLO1.870e-1051.92Uncharacterized protein (Fragment) n=3 Tax=Volvox ... [more]
E1ZHC8_CHLVA4.410e-1053.06PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A8J4AK52_9CHLO1.220e-950.00Uncharacterized protein n=2 Tax=Volvox africanus T... [more]
A0A835T1N8_CHLIN4.280e-950.00Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A835WCW9_9CHLO3.830e-847.92Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A5J4Y0D1_9CHLO2.490e-746.00Enhancer of isoform C n=1 Tax=Trebouxia sp. A1-2 T... [more]
R1B8J4_EMIHU2.890e-744.44PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A4D9C4P4_SALSN3.410e-751.02Uncharacterized protein n=2 Tax=Salvia splendens T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 6..51
e-value: 8.4E-11
score: 43.3
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 11..51
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 8..51
score: 9.134
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 6..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_127contigContig_127:265116..265268 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129977mRNA_14862Tribonema minus UTEX_B_3156 mRNAContig_127 265116..265268 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|129977|gw1.127.9.1 ID=Trimin1|129977|gw1.127.9.1|Name=jgi.p|Trimin1|129977|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=51bp
NVDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRHGTEVADWACFE
C
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD