mRNA_14797 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129674
Unique NamemRNA_14797
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|129674 vs. uniprot
Match: A0A836CMF9_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF9_9STRA)

HSP 1 Score: 180 bits (456), Expect = 3.330e-53
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1 
Query:    1 GWLPLHMAAEAGDLAAVRAAVTDEGVYIDEKTRDKAKCSALWLAAQGGKLAVVQFLVDEGSALDLMNASGQTPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPLYLAAACGSAGAARKLAHKGAALEXXXXXXXXXXXXXXXXXHDRVVALLLRKGVLP 690
            GWLPLHMAAEAGDLAAVRAAVTDEGVYIDEKTRDKAKCSALWLAAQGGKLAVVQFLVDEGSALDLMNASGQTPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPLYLAAACGSAGAARKLAHKGAALEXXXXXXXXXXXXXXXXXHDRVVALLLRKGVLP
Sbjct:    1 GWLPLHMAAEAGDLAAVRAAVTDEGVYIDEKTRDKAKCSALWLAAQGGKLAVVQFLVDEGSALDLMNASGQTPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPLYLAAACGSAGAARKLAHKGAALEXXXXXXXXXXXXXXXXXHDRVVALLLRKGVLP 230
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BLAST of jgi.p|Trimin1|129674 vs. uniprot
Match: A0A835ZJE4_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJE4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.500e-7
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:  115 SALWLAAQGGKLAVVQFLVDEGSALDLMNASGQTPLY 225
            +ALWLAAQ G++ VVQ+LVDEGSAL+L N+ GQTPLY
Sbjct:    1 TALWLAAQAGRVPVVQYLVDEGSALELPNSLGQTPLY 37
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129674 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CMF9_9STRA3.330e-53100.00Ankyrin repeat-containing domain protein (Fragment... [more]
A0A835ZJE4_9STRA5.500e-772.97Ankyrin repeat-containing domain protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_156contigContig_156:105162..105851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129674|gw1.156.5.1
BRITEko00000,ko04121
KEGG koko:K10324,ko:K10325
GOsGO:0000151,GO:0000209,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0007517,GO:0007519,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009888,GO:0009987,GO:0014706,GO:0016567,GO:0019538,GO:0019941,GO:0023052,GO:0030154,GO:0030163,GO:0031461,GO:0031466,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0035914,GO:0036211,GO:0043170,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045445,GO:0048513,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0060537,GO:0060538,GO:0061061,GO:0065007,GO:0070647,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Preferred nameASB2
DescriptionAnkyrin repeat and SOCS box
COG categoryS
Max annot lvl33208|Metazoa
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota,39U4P@33154|Opisthokonta,3BD2M@33208|Metazoa,3D08P@33213|Bilateria,480SY@7711|Chordata,48XS3@7742|Vertebrata,3J56P@40674|Mammalia,4J3FI@91561|Cetartiodactyla
Evalue0.000189
Seed ortholog9940.ENSOARP00000015215
Hectar predicted targeting categoryother localisation
TranscriptId129996
TrackFilteredModels1
ProteinId129674
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129674gene_14797Tribonema minus UTEX_B_3156 geneContig_156 105162..105851 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14797_1exon_14797_1Tribonema minus UTEX_B_3156 exonContig_156 105162..105851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14797CDS_14797Tribonema minus UTEX_B_3156 CDSContig_156 105162..105851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129674Trimin1|129674|gw1.156.5.1Tribonema minus UTEX_B_3156 polypeptideContig_156 105162..105851 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14797 ID=mRNA_14797|Name=jgi.p|Trimin1|129674|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=690bp|location=Sequence derived from alignment at Contig_156:105162..105851- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCTGGCTGCCTTTGCATATGGCGGCGGAGGCGGGAGACCTGGCGGCGGT
AAGAGCTGCCGTCACCGATGAAGGAGTGTACATTGACGAGAAGACCAGAG
ACAAAGCAAAGTGCTCAGCGCTGTGGCTGGCTGCGCAGGGCGGCAAGCTA
GCAGTGGTGCAATTCCTCGTCGACGAGGGCTCCGCCCTGGACCTGATGAA
CGCGTCAGGGCAGACCCCGCTGTACGCGGCCTGCGCAGGGGGCAAGGCAG
AGATGACGAAGCTGTTGGTGTCTCTGGGGGCAGGCGTCGACAAGCCCGCC
AAGGACGGCACCACCCCCCTCTTCGCGGCAGTCGCCAGCGGAAACCTGGC
GGCGGTGGAGGTGATGCTCGACAACGCGCCGCGCCTGGACGTGAAGACCA
AAGACGGTTGCGGCCTGCTCAGCGCCGCCGCGCGCAGCGGCGCGGAGGAG
GTCATGGACGCGCTCCTCGTCTTCAAGTCCAAGTTGGATCTTGATCAGCG
CGACAACGAGGGGAGAACGCCGCTGTACCTCGCAGCGGCGTGCGGCAGCG
CGGGCGCCGCGCGCAAGCTCGCGCACAAGGGCGCGGCGCTGGAGGCTGCG
GCGCTCGACGGCACGACGCCGCTGTGGGCGGCCGCGCACGCGGGGCACGA
CCGCGTCGTCGCGCTGCTGCTGCGCAAGGGCGTGCTGCCG
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protein sequence of jgi.p|Trimin1|129674

>Trimin1|129674|gw1.156.5.1 ID=Trimin1|129674|gw1.156.5.1|Name=jgi.p|Trimin1|129674|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=230bp
GWLPLHMAAEAGDLAAVRAAVTDEGVYIDEKTRDKAKCSALWLAAQGGKL
AVVQFLVDEGSALDLMNASGQTPLYAACAGGKAEMTKLLVSLGAGVDKPA
KDGTTPLFAAVASGNLAAVEVMLDNAPRLDVKTKDGCGLLSAAARSGAEE
VMDALLVFKSKLDLDQRDNEGRTPLYLAAACGSAGAARKLAHKGAALEAA
ALDGTTPLWAAAHAGHDRVVALLLRKGVLP
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mRNA from alignment at Contig_156:105162..105851-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14797 ID=mRNA_14797|Name=jgi.p|Trimin1|129674|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=690bp|location=Sequence derived from alignment at Contig_156:105162..105851- (Tribonema minus UTEX_B_3156 )
GGCTGGCTGCCTTTGCATATGGCGGCGGAGGCGGGAGACCTGGCGGCGGT
AAGAGCTGCCGTCACCGATGAAGGAGTGTACATTGACGAGAAGACCAGAG
ACAAAGCAAAGTGCTCAGCGCTGTGGCTGGCTGCGCAGGGCGGCAAGCTA
GCAGTGGTGCAATTCCTCGTCGACGAGGGCTCCGCCCTGGACCTGATGAA
CGCGTCAGGGCAGACCCCGCTGTACGCGGCCTGCGCAGGGGGCAAGGCAG
AGATGACGAAGCTGTTGGTGTCTCTGGGGGCAGGCGTCGACAAGCCCGCC
AAGGACGGCACCACCCCCCTCTTCGCGGCAGTCGCCAGCGGAAACCTGGC
GGCGGTGGAGGTGATGCTCGACAACGCGCCGCGCCTGGACGTGAAGACCA
AAGACGGTTGCGGCCTGCTCAGCGCCGCCGCGCGCAGCGGCGCGGAGGAG
GTCATGGACGCGCTCCTCGTCTTCAAGTCCAAGTTGGATCTTGATCAGCG
CGACAACGAGGGGAGAACGCCGCTGTACCTCGCAGCGGCGTGCGGCAGCG
CGGGCGCCGCGCGCAAGCTCGCGCACAAGGGCGCGGCGCTGGAGGCTGCG
GCGCTCGACGGCACGACGCCGCTGTGGGCGGCCGCGCACGCGGGGCACGA
CCGCGTCGTCGCGCTGCTGCTGCGCAAGGGCGTGCTGCCG
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Coding sequence (CDS) from alignment at Contig_156:105162..105851-

>mRNA_14797 ID=mRNA_14797|Name=jgi.p|Trimin1|129674|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=690bp|location=Sequence derived from alignment at Contig_156:105162..105851- (Tribonema minus UTEX_B_3156 )
GGCTGGCTGCCTTTGCATATGGCGGCGGAGGCGGGAGACCTGGCGGCGGT
AAGAGCTGCCGTCACCGATGAAGGAGTGTACATTGACGAGAAGACCAGAG
ACAAAGCAAAGTGCTCAGCGCTGTGGCTGGCTGCGCAGGGCGGCAAGCTA
GCAGTGGTGCAATTCCTCGTCGACGAGGGCTCCGCCCTGGACCTGATGAA
CGCGTCAGGGCAGACCCCGCTGTACGCGGCCTGCGCAGGGGGCAAGGCAG
AGATGACGAAGCTGTTGGTGTCTCTGGGGGCAGGCGTCGACAAGCCCGCC
AAGGACGGCACCACCCCCCTCTTCGCGGCAGTCGCCAGCGGAAACCTGGC
GGCGGTGGAGGTGATGCTCGACAACGCGCCGCGCCTGGACGTGAAGACCA
AAGACGGTTGCGGCCTGCTCAGCGCCGCCGCGCGCAGCGGCGCGGAGGAG
GTCATGGACGCGCTCCTCGTCTTCAAGTCCAAGTTGGATCTTGATCAGCG
CGACAACGAGGGGAGAACGCCGCTGTACCTCGCAGCGGCGTGCGGCAGCG
CGGGCGCCGCGCGCAAGCTCGCGCACAAGGGCGCGGCGCTGGAGGCTGCG
GCGCTCGACGGCACGACGCCGCTGTGGGCGGCCGCGCACGCGGGGCACGA
CCGCGTCGTCGCGCTGCTGCTGCGCAAGGGCGTGCTGCCG
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