mRNA_14723 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133602
Unique NamemRNA_14723
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133602 vs. uniprot
Match: A0A836CLN3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN3_9STRA)

HSP 1 Score: 228 bits (581), Expect = 4.970e-76
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPPR 315
            PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPPR
Sbjct:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPPR 105          
BLAST of jgi.p|Trimin1|133602 vs. uniprot
Match: A0A835ZDE5_9STRA (Alkaline-phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE5_9STRA)

HSP 1 Score: 137 bits (345), Expect = 6.310e-36
Identity = 67/103 (65.05%), Postives = 74/103 (71.84%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRP 309
            P ALGYKKSLA+L SGN +WTY    G CG     KLTD+W+D  PA  LKPA  C+ NA   C YEDELFE RAVQWIKAHDAR+PLFMVYAP AV +P  P
Sbjct:  147 PKALGYKKSLAFLCSGNRYWTYDAQFGICGDGGGVKLTDLWEDDGPAINLKPAADCS-NALPNCFYEDELFEKRAVQWIKAHDARKPLFMVYAPHAVHSPLAP 248          
BLAST of jgi.p|Trimin1|133602 vs. uniprot
Match: A0A836CMP8_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP8_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.010e-34
Identity = 66/104 (63.46%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPP 312
            P A GYKKSLAYL SGN +WTY    G CG  +   LTD+WQD  PA  LKPA  C  N Q  CVYEDEL E RA QWIKAHDA EPLFMVYAP A+ +P  PP
Sbjct:  153 PKARGYKKSLAYLCSGNKYWTYEAQFGICGAGAGPTLTDLWQDDGPAIDLKPAAGCA-NGQANCVYEDELLEQRATQWIKAHDASEPLFMVYAPHALHSPLDPP 255          
BLAST of jgi.p|Trimin1|133602 vs. uniprot
Match: A0A835Z5L6_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5L6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.890e-29
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTK-LTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPP 312
            P A G+ K L +L SGND W+YT+  G CG  ++   LTD+W+D  PA  LKP   C+ N Q GCVYE+ELFE R  Q +KAHDA+ PL + YAP +V  P +PP
Sbjct:  167 PRARGWSKYLGFLFSGNDLWSYTIGNGMCGATAEADDLTDLWEDDGPALALKPPEHCSVNRQDGCVYEEELFEARVTQTLKAHDAQRPLLLTYAPHSVHTPLQPP 271          
BLAST of jgi.p|Trimin1|133602 vs. uniprot
Match: A0A835YXV1_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV1_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.510e-24
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRP 309
            P A GY +SLAYL++GND WTYT  G  CG  SK  L D+W+D  PA    P + C    Q GC YEDELFE R  Q I+ HD  +PLF+V+A  AV AP  P
Sbjct:  161 PKARGYSRSLAYLDAGNDQWTYT-GGNMCG--SKYSLKDLWEDDGPAVNYTPPKRCTSATQNGCQYEDELFEARISQTIQFHDQDQPLFLVWATHAVHAPLAP 260          
BLAST of jgi.p|Trimin1|133602 vs. uniprot
Match: A0A835ZHV6_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.890e-21
Identity = 48/103 (46.60%), Postives = 59/103 (57.28%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRP 309
            P A GY +SLAYL SGN+ WTY      C  +    L D+W+D  PA   KP + C    Q GC YED LFE R  Q I+ HD  +PLF+V+A  AV +P  P
Sbjct:  158 PKARGYSRSLAYLASGNNQWTYADGQAMC--SKGVSLIDLWEDDGPAVNYKPPKRCTSTTQNGCEYEDSLFEARVSQTIQFHDQDQPLFLVWATHAVHSPLAP 258          
BLAST of jgi.p|Trimin1|133602 vs. uniprot
Match: A0A7S2FAG3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FAG3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.250e-7
Identity = 39/128 (30.47%), Postives = 57/128 (44.53%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTG-------GACGINSKTKLTDIWQ-----DGAPAFGLKPART-C--------NHNAQTGCVYEDELFETRAVQWIKAHDAREP---LFMVYAPRAVTAPWRPP 312
            P   GY  SL+Y    ND+W +T+         G   +     + D+W      D  PA GL  +   C          + +  C+YED LF+TRA++ +  HD  +P   LF+ YAP  V  P + P
Sbjct:  179 PAGRGYDSSLSYFYHTNDYWNFTVDDDFGAGPQGCESLEEGESIYDLWVKEVDGDEGPAIGLNNSIDGCYSGDGAFPEDDVEGNCMYEDALFQTRALKIVNDHDLSQPEHPLFLFYAPHIVHEPLQVP 306          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133602 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CLN3_9STRA4.970e-76100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZDE5_9STRA6.310e-3665.05Alkaline-phosphatase-like protein n=1 Tax=Tribonem... [more]
A0A836CMP8_9STRA1.010e-3463.46Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A835Z5L6_9STRA6.890e-2951.43Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A835YXV1_9STRA2.510e-2452.43Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A835ZHV6_9STRA1.890e-2146.60Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A7S2FAG3_9STRA1.250e-730.47Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_120contigContig_120:382907..383221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133602|gw1.120.19.1
Descriptionsulfuric ester hydrolase activity
COG categoryP
Max annot lvl33208|Metazoa
EggNOG OGsCOG3119@1|root,KOG3867@2759|Eukaryota,38DVH@33154|Opisthokonta,3BAP3@33208|Metazoa
Evalue1.07e-08
Seed ortholog400682.PAC_15727437
Hectar predicted targeting categoryother localisation
TranscriptId133924
TrackFilteredModels1
ProteinId133602
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133602gene_14723Tribonema minus UTEX_B_3156 geneContig_120 382907..383221 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14723_1exon_14723_1Tribonema minus UTEX_B_3156 exonContig_120 382907..383221 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14723CDS_14723Tribonema minus UTEX_B_3156 CDSContig_120 382907..383221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133602Trimin1|133602|gw1.120.19.1Tribonema minus UTEX_B_3156 polypeptideContig_120 382907..383221 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14723 ID=mRNA_14723|Name=jgi.p|Trimin1|133602|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_120:382907..383221- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCCATAGCGTTGGGCTACAAAAAGTCTCTGGCTTACCTCAACTCCGGCAA
CGATTTCTGGACGTACACCATGACGGGAGGGGCGTGCGGCATCAACAGCA
AGACAAAGCTCACCGACATCTGGCAGGACGGCGCACCCGCGTTCGGCCTC
AAGCCCGCCAGAACCTGCAACCACAACGCTCAGACAGGCTGCGTCTACGA
GGACGAGCTCTTCGAGACGCGTGCCGTGCAGTGGATCAAGGCGCACGACG
CGCGTGAGCCCCTGTTCATGGTGTACGCGCCGCGCGCGGTCACAGCCCCA
TGGCGCCCACCGCGG
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protein sequence of jgi.p|Trimin1|133602

>Trimin1|133602|gw1.120.19.1 ID=Trimin1|133602|gw1.120.19.1|Name=jgi.p|Trimin1|133602|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGL
KPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAP
WRPPR
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mRNA from alignment at Contig_120:382907..383221-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14723 ID=mRNA_14723|Name=jgi.p|Trimin1|133602|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_120:382907..383221- (Tribonema minus UTEX_B_3156 )
CCCATAGCGTTGGGCTACAAAAAGTCTCTGGCTTACCTCAACTCCGGCAA CGATTTCTGGACGTACACCATGACGGGAGGGGCGTGCGGCATCAACAGCA AGACAAAGCTCACCGACATCTGGCAGGACGGCGCACCCGCGTTCGGCCTC AAGCCCGCCAGAACCTGCAACCACAACGCTCAGACAGGCTGCGTCTACGA GGACGAGCTCTTCGAGACGCGTGCCGTGCAGTGGATCAAGGCGCACGACG CGCGTGAGCCCCTGTTCATGGTGTACGCGCCGCGCGCGGTCACAGCCCCA TGGCGCCCACCGCGG
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Coding sequence (CDS) from alignment at Contig_120:382907..383221-

>mRNA_14723 ID=mRNA_14723|Name=jgi.p|Trimin1|133602|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=315bp|location=Sequence derived from alignment at Contig_120:382907..383221- (Tribonema minus UTEX_B_3156 )
CCCATAGCGTTGGGCTACAAAAAGTCTCTGGCTTACCTCAACTCCGGCAA
CGATTTCTGGACGTACACCATGACGGGAGGGGCGTGCGGCATCAACAGCA
AGACAAAGCTCACCGACATCTGGCAGGACGGCGCACCCGCGTTCGGCCTC
AAGCCCGCCAGAACCTGCAACCACAACGCTCAGACAGGCTGCGTCTACGA
GGACGAGCTCTTCGAGACGCGTGCCGTGCAGTGGATCAAGGCGCACGACG
CGCGTGAGCCCCTGTTCATGGTGTACGCGCCGCGCGCGGTCACAGCCCCA
TGGCGCCCACCGCGG
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