mRNA_14629 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351624
Unique NamemRNA_14629
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|351624 vs. uniprot
Match: A0A836C7Y1_9STRA (Uricase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Y1_9STRA)

HSP 1 Score: 491 bits (1263), Expect = 5.070e-174
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 1 
Query:    1 MVHALFLDTYPQRLTNRTLYRHXXXXXXXLVTFCRVIVKQDIWERVQVPDSRGVVTEHNHAFKKVGPHYTYARVEAPRGAPMRLWGGCKGYTLLKTTQSSFVDFHKDPYTSLPQATDRLMGSNFDSEWTYTPDTVAAAVSGRVNFVAIRDQILDTMTKTFAGPADVGVPSASVQVTLYQMGGAVLSIAPQVTDITLYMPNVHNMPFDLAKLGMSNTDHTGNIDILYPIDEPHGIIQATIVRPGAKL 738
            MVHALFLDTYPQRLTNRTLYRHXXXXXXXLVTFCRVIVKQDIWERVQVPDSRGVVTEHNHAFKKVGPHYTYARVEAPRGAPMRLWGGCKGYTLLKTTQSSFVDFHKDPYTSLPQATDRLMGSNFDSEWTYTPDTVAAAVSGRVNFVAIRDQILDTMTKTFAGPADVGVPSASVQVTLYQMGGAVLSIAPQVTDITLYMPNVHNMPFDLAKLGMSNTDHTGNIDILYPIDEPHGIIQATIVRPGAKL
Sbjct:    1 MVHALFLDTYPQRLTNRTLYRHXXXXXXXLVTFCRVIVKQDIWERVQVPDSRGVVTEHNHAFKKVGPHYTYARVEAPRGAPMRLWGGCKGYTLLKTTQSSFVDFHKDPYTSLPQATDRLMGSNFDSEWTYTPDTVAAAVSGRVNFVAIRDQILDTMTKTFAGPADVGVPSASVQVTLYQMGGAVLSIAPQVTDITLYMPNVHNMPFDLAKLGMSNTDHTGNIDILYPIDEPHGIIQATIVRPGAKL 246
[Close]
BLAST of jgi.p|Trimin1|351624 vs. uniprot
Match: D8LM50_ECTSI (Uricase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM50_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 2.440e-72
Identity = 121/230 (52.61%), Postives = 149/230 (64.78%), Query Frame = 1 
Query:   61 RHXXXXXXXLVTFCRVIVKQDIWERVQVPDSRGVVTEHNHAFKKVGPHYTYARVEAPRGA----PMRLWGGCKGYTLLKTTQSSFVDFHKDPYTSLPQATDRLMGSNFDSEWTYTPDTVAAAVSGRVNFVAIRDQILDTMTKTFAGPADVGVPSASVQVTLYQMGGAVLSIAPQVTDITLYMPNVHNMPFDLAKLGMSNTDHTGNIDILYPIDEPHGIIQATIVRPGAKL 738
            +H       LV  CRV+VK+D W+RV+  DS G   +H+HAF K GPHY + R E  R       +R +GG KG TL KTTQSSF +FHKD  TSLP+A DRL+G+  D EW Y        V    +F   R +I+D + + FAGPAD GV S SVQVT +QMG AVL+  P V++ T YMPNVHN+PFDLAK G+ N D TG   I YP+DEPHGIIQAT+ RP +KL
Sbjct:   85 KHFLATYPDLVHRCRVMVKEDTWKRVRTADSTGKTRDHDHAFLKAGPHYLFGRSEGTRQPCGRISIRAFGGVKGLTLFKTTQSSFTNFHKDNNTSLPEAEDRLLGTCMDGEWEYD-------VLRSPDFSGDRAKIIDVLVEQFAGPADKGVYSPSVQVTCFQMGSAVLATVPSVSECTFYMPNVHNLPFDLAKYGLVNADQTGLPHIFYPVDEPHGIIQATMKRPSSKL 307
[Close]
BLAST of jgi.p|Trimin1|351624 vs. uniprot
Match: W7TW56_9STRA (Uricase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW56_9STRA)

HSP 1 Score: 192 bits (489), Expect = 8.360e-56
Identity = 100/230 (43.48%), Postives = 142/230 (61.74%), Query Frame = 1 
Query:   61 RHXXXXXXXLVTFCRVIVKQDIWERVQVPDSRGVVTEHNHAFKKVGPHYTYARVEAPR---GAPMRLWGGCKGYTLLKTTQSSFVDFHKDPYTSLPQATDRLMGSNFDSEWTYTPDTVAAAVSGRVNFVAIRDQILDTMTKTFAGPADVGVPSASVQVTLYQMGGAVLSIAPQVTDITLYMPNVHNMPFDLAKLGMSNTDHTGNIDILYPIDEPHGIIQATIVRP-GAKL 738
            +H       +VT   V + +D+W RV   DS G + +HNHAF KVGP  T+  + A +      + +  G +   LLKTTQS F +FH+D + +L    DRL+G++ D EW+++    AA ++ R ++ A+   +LDT+   FAGPAD GV S SVQ TLY MG  +L+  P V  I LYMPN+HN+P DL+K  + N DH+G  DI  P+D+PHG+I+A I RP GA+L
Sbjct:   85 KHFLAQYPAIVTKVDVQLVKDLWTRVVNKDSHGRIAQHNHAFIKVGPQTTHTHIVAEKVGGSVVVSVRSGIRSLILLKTTQSGFENFHRDEFRALGDTNDRLVGTSVDGEWSFS----AATIASRPDYEALNKTVLDTLIDEFAGPADKGVYSVSVQQTLYDMGTGLLAKVPGVDKIELYMPNIHNIPVDLSKFRIENKDHSGKPDIFLPMDDPHGMIKAIIERPRGARL 310
[Close]
BLAST of jgi.p|Trimin1|351624 vs. uniprot
Match: H3GV00_PHYRM (Uricase n=21 Tax=Phytophthora TaxID=4783 RepID=H3GV00_PHYRM)

HSP 1 Score: 188 bits (477), Expect = 4.750e-54
Identity = 104/232 (44.83%), Postives = 143/232 (61.64%), Query Frame = 1 
Query:   55 LYRHXXXXXXXLVTFCRVIVKQDIWERVQVPDSRGVVTEHNHAFKKVGPHYTYARVEAPR---GAP-MRLWGGCKGYTLLKTTQSSFVDFHKDPYTSLPQATDRLMGSNFDSEWTYTPDTVAAAVSGRVNFVAIRDQILDTMTKTFAGPADVGVPSASVQVTLYQMGGAVLSIAPQVTDITLYMPNVHNMPFDLAKLGMSNTDHTGNIDILYPIDEPHGIIQATIVRPGAKL 738
            L +H       +++  +V + +  WERV VPDS+G    H+HAF   G  ++ A V A +   GAP + + GG  G  +LKTTQS+FVDF +D YT+LP   DRL+ +   S W+YTP     A+ G  +FVA   ++ + + +TF+GPADVGVPS +VQ TLY+MG AVL   P V DI + MPN+HN P DLA+ G  N    G  ++  P DEPHGII AT+VR  ++L
Sbjct:   84 LAKHFVTKHPDIISVAKVKLFETPWERVVVPDSKGQTRPHHHAFVSAGAGFSTAYVVARKSSHGAPEVTVQGGVDGLKVLKTTQSAFVDFFRDEYTTLPDVPDRLVSTCVTSTWSYTP----GAIGG--DFVARAAEVKNVLLETFSGPADVGVPSPAVQFTLYKMGEAVLERCPYVQDIKITMPNIHNNPIDLARFGCKNIHPHG--EVFLPTDEPHGIISATMVRSASRL 307
[Close]
BLAST of jgi.p|Trimin1|351624 vs. uniprot
Match: A0A0N7L5S7_PLAHL (Uricase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5S7_PLAHL)

HSP 1 Score: 178 bits (451), Expect = 3.550e-50
Identity = 102/232 (43.97%), Postives = 138/232 (59.48%), Query Frame = 1 
Query:   55 LYRHXXXXXXXLVTFCRVIVKQDIWERVQVPDSRGVVTEHNHAFKKVGPHYTYARVEAPR---GAP-MRLWGGCKGYTLLKTTQSSFVDFHKDPYTSLPQATDRLMGSNFDSEWTYTPDTVAAAVSGRVNFVAIRDQILDTMTKTFAGPADVGVPSASVQVTLYQMGGAVLSIAPQVTDITLYMPNVHNMPFDLAKLGMSNTDHTGNIDILYPIDEPHGIIQATIVRPGAKL 738
            L  H       +V+  +V + +  WER+ +PDS+GV+  H+HAF    P ++ A V A +   G P + + GG  G   LKTTQS+FV+F +D +T+L  A DRL+ +   S WTY  +T       R +F      I + + +TFAGPADVGVPS +VQ TLY+MG AVL     V +IT+ MPN+HN P DL++ G  N    G  ++  PIDEPHGII ATIVR  AKL
Sbjct:   84 LAEHFVMKHPEIVSLAKVKLFEMPWERLVLPDSKGVMRPHHHAFVSASPGFSTATVTARKSKYGDPEVTVQGGVDGLKALKTTQSAFVNFLRDEFTTLEDAPDRLVSTCISSTWTYISETT------RGDFATKAAVIKNVLLETFAGPADVGVPSPAVQFTLYKMGEAVLEKCSYVKEITISMPNIHNNPIDLSRFGCKNIHPHG--EVFLPIDEPHGIISATIVRSTAKL 307
[Close]
BLAST of jgi.p|Trimin1|351624 vs. uniprot
Match: K3W9W7_GLOUD (Uricase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9W7_GLOUD)

HSP 1 Score: 175 bits (444), Expect = 3.900e-49
Identity = 100/233 (42.92%), Postives = 133/233 (57.08%), Query Frame = 1 
Query:   55 LYRHXXXXXXXLVTFCRVIVKQDIWERVQVPDSRGVVTEHNHAF----KKVGPHYTYARVEAPRGAPM-RLWGGCKGYTLLKTTQSSFVDFHKDPYTSLPQATDRLMGSNFDSEWTYTPDTVAAAVSGRVNFVAIRDQILDTMTKTFAGPADVGVPSASVQVTLYQMGGAVLSIAPQVTDITLYMPNVHNMPFDLAKLGMSNTDHTGNIDILYPIDEPHGIIQATIVRPGAKL 738
            L +H       ++   +V + +  WERV   DS G V  H HAF      +   Y  AR     G PM  L  G  G+ ++KTTQSSF+DF +D YT+LP   DRL+G+   + W +T +   +       F A R+Q+   +  TFAGPADVGVPS +VQ TLYQMG AVL+  P V DIT+ MPNVHN+P DL + G+ N    G  ++  P  EPHGIIQA +VR  ++L
Sbjct:   83 LAKHFVSKHPQIIDVAKVKLFETHWERVVNADSTGKVRPHAHAFVGVDSGISTTYAVARKAPHGGEPMISLSSGIDGWRVMKTTQSSFMDFFRDEYTTLPDTPDRLVGTVVKATWNFTSEAFRSC------FKAQREQVKRVLLDTFAGPADVGVPSDAVQATLYQMGEAVLNECPFVKDITILMPNVHNLPVDLTRFGLKNIHPHG--EVFLPTSEPHGIIQAKMVRSTSRL 307
[Close]
BLAST of jgi.p|Trimin1|351624 vs. uniprot
Match: A0A662WET4_9STRA (Uricase n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A662WET4_9STRA)

HSP 1 Score: 175 bits (444), Expect = 5.230e-49
Identity = 99/221 (44.80%), Postives = 133/221 (60.18%), Query Frame = 1 
Query:   91 VTFCRVIVKQDIWERVQVPDSRGVVTEHNHAFKKVGPHYTYARVEAPR----GAP-MRLWGGCKGYTLLKTTQSSFVDFHKDPYTSLPQATDRLMGSNFDSEWTYTPDTVAAAVSGRVNFVAIRDQILDTMTKTFAGPADVGVPSASVQVTLYQMGGAVLSIAPQVTDITLYMPNVHNMPFDLAKLGMSNTDHTGNIDILYPIDEPHGIIQATIVRPGAKL 738
            ++  +V + +  WER+  PDS G +  H+HAF      ++ A V A +    GAP + + GG  G  +LKTTQS+FV F KD YT+LP+  DRL+ +   S W YTP     AV G  +F A   ++   + +TFAGP+DVGVPS +VQ TLY+MG AVL   P V DI + MPN+HN P DL + G  N    G  ++  P DEPHGII AT+VR  +KL
Sbjct:  106 ISVAKVKLFETPWERMVTPDSNGKMRPHHHAFVSASAGFSTAYVVARKSPSGGAPQVTVQGGVDGLRVLKTTQSAFVKFFKDEYTTLPEVPDRLVSTVVASTWNYTP----GAVGG--DFTAKAAEVKRVLLETFAGPSDVGVPSPAVQFTLYKMGEAVLEQCPYVKDIKITMPNIHNNPIDLTRFGCKNIHPHG--EVFLPTDEPHGIISATMVRSASKL 318
[Close]
BLAST of jgi.p|Trimin1|351624 vs. uniprot
Match: A0A5D6XUS0_9STRA (Uricase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUS0_9STRA)

HSP 1 Score: 174 bits (442), Expect = 7.730e-49
Identity = 101/233 (43.35%), Postives = 137/233 (58.80%), Query Frame = 1 
Query:   55 LYRHXXXXXXXLVTFCRVIVKQDIWERVQVPDSRGVVTEHNHAFKKV--GPHYTYARV-EAPRGAP--MRLWGGCKGYTLLKTTQSSFVDFHKDPYTSLPQATDRLMGSNFDSEWTYTPDTVAAAVSGRVNFVAIRDQILDTMTKTFAGPADVGVPSASVQVTLYQMGGAVLSIAPQVTDITLYMPNVHNMPFDLAKLGMSNTDHTGNIDILYPIDEPHGIIQATIVRPGAKL 738
            L +H       +V   +V + +  WERV   DS G V  H+HAF  V  G   T A   +AP G    + L  G  G+ ++KTTQSSFVDF +D YT+LP   DRL+G+   + WT  P+ + +       F   R Q+  T+   FAGPADVGVPS +VQ TL+QMG AVL+  P VTD+++ MPNVHN+P D+ + G+ N    G  ++  P  EPHGIIQAT+VR  ++L
Sbjct:   83 LAKHFVATHPQIVDVAKVKLFETHWERVVTADSTGKVRPHHHAFVGVDSGIATTSAVARKAPHGGEPVVSLSAGIDGWRVMKTTQSSFVDFFRDEYTTLPDVPDRLVGTVVKASWTVAPEALRSC------FKTQRAQVKKTLLDAFAGPADVGVPSDAVQATLFQMGEAVLNKCPFVTDVSILMPNVHNLPVDVTRFGLKNLHPHG--EVFLPTSEPHGIIQATMVRATSRL 307
[Close]
BLAST of jgi.p|Trimin1|351624 vs. uniprot
Match: A0A8K1FI17_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI17_PYTOL)

HSP 1 Score: 170 bits (431), Expect = 3.240e-47
Identity = 97/232 (41.81%), Postives = 130/232 (56.03%), Query Frame = 1 
Query:   55 LYRHXXXXXXXLVTFCRVIVKQDIWERVQVPDSRGVVTEHNHAFKKVGPH----YTYARVEAPRGAPMRLWGGCKGYTLLKTTQSSFVDFHKDPYTSLPQATDRLMGSNFDSEWTYTPDTVAAAVSGRVNFVAIRDQILDTMTKTFAGPADVGVPSASVQVTLYQMGGAVLSIAPQVTDITLYMPNVHNMPFDLAKLGMSNTDHTGNIDILYPIDEPHGIIQATIVRPGAKL 738
            L +H        +   +V + +  W R+  PDS+G    H+HAF   G      Y  AR  A     + +  G +G  +LKT++SSFVDF +D YT+LP   DRL+G+   + W YT +        RV F    D+I   +  TFAGP+D GV S +VQ TLY+MG AVL   P V DIT+ MPNVHN+P DL K G+ N    G  ++  P DEPHGII+AT+VR  +KL
Sbjct:   83 LAKHFVNTHPTKIDVAKVKIFETKWVRLVTPDSKGTRKPHHHAFVGDGSGTATTYVIARKTAHGEPQISVQSGIEGLRVLKTSKSSFVDFFRDAYTTLPDVPDRLVGTVVTATWNYTSEAT------RVCFQKQADEIKRVLLDTFAGPSDAGVDSPAVQFTLYKMGEAVLDQCPSVKDITITMPNVHNLPVDLTKFGLKNIHPHG--EVFLPTDEPHGIIRATMVRATSKL 306
[Close]
BLAST of jgi.p|Trimin1|351624 vs. uniprot
Match: M4BL02_HYAAE (Uricase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BL02_HYAAE)

HSP 1 Score: 166 bits (421), Expect = 1.120e-45
Identity = 91/227 (40.09%), Postives = 130/227 (57.27%), Query Frame = 1 
Query:   55 LYRHXXXXXXXLVTFCRVIVKQDIWERVQVPDSRGVVTEHNHAFKKVGPHYTYARVEAPRGA-----PMRLWGGCKGYTLLKTTQSSFVDFHKDPYTSLPQATDRLMGSNFDSEWTYTPDTVAAAVSGRVNFVAIRDQILDTMTKTFAGPADVGVPSASVQVTLYQMGGAVLSIAPQVTDITLYMPNVHNMPFDLAKLGMSNTDHTGNIDILYPIDEPHGIIQATIV 720
            L  H       +++  +V + +  WER+ VP+++G +  H+HAF      ++   V A +        + + GG  G  +LKTTQSSFVDF +D YT+LPQ  DRLM +   + WTY  D V        +F +   +I   + +TFAGP+DVGVPS +VQ TL++MG AVL   P V DI + MPN+HN P DL++ G  N    G  ++  P DEPHGII AT++
Sbjct:   84 LATHFVTRHSDIISVAKVKLVETPWERLVVPNTKGEMQPHHHAFVSSSLGFSTTHVVARKSMMDSTPELTVQGGVDGLKVLKTTQSSFVDFFRDEYTTLPQVPDRLMCTCVTASWTYMSDAVGG------DFASKGAEIKKVLLETFAGPSDVGVPSPAVQFTLFKMGEAVLEKCPYVKDIKISMPNIHNNPIDLSRFGCKNIHPHG--EVFLPTDEPHGIISATMI 302
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351624 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7Y1_9STRA5.070e-174100.00Uricase n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
D8LM50_ECTSI2.440e-7252.61Uricase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM50... [more]
W7TW56_9STRA8.360e-5643.48Uricase n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
H3GV00_PHYRM4.750e-5444.83Uricase n=21 Tax=Phytophthora TaxID=4783 RepID=H3G... [more]
A0A0N7L5S7_PLAHL3.550e-5043.97Uricase n=1 Tax=Plasmopara halstedii TaxID=4781 Re... [more]
K3W9W7_GLOUD3.900e-4942.92Uricase n=1 Tax=Globisporangium ultimum (strain AT... [more]
A0A662WET4_9STRA5.230e-4944.80Uricase n=4 Tax=Peronosporaceae TaxID=4777 RepID=A... [more]
A0A5D6XUS0_9STRA7.730e-4943.35Uricase n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
A0A8K1FI17_PYTOL3.240e-4741.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BL02_HYAAE1.120e-4540.09Uricase n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_95contigContig_95:70..4850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351624|estExt_Genemark1.C_Ctg_950001
BRITEko00000,ko00001,ko00002,ko01000,ko04031,ko04131
KEGG rclassRC02107,RC02551
KEGG ReactionR02106,R07981
KEGG ModuleM00404,M00546
KEGG Pathwayko00230,ko00232,ko01100,ko01120,ko04141,ko05134,map00230,map00232,map01100,map01120,map04141,map05134
KEGG koko:K00365,ko:K07953
EC1.7.3.3
GOsGO:0000255,GO:0003674,GO:0003824,GO:0004846,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0006996,GO:0007031,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009636,GO:0009987,GO:0010033,GO:0016043,GO:0016491,GO:0016661,GO:0016663,GO:0017144,GO:0018130,GO:0019428,GO:0019439,GO:0019627,GO:0019628,GO:0022607,GO:0031907,GO:0031974,GO:0034641,GO:0042221,GO:0042493,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045471,GO:0046113,GO:0046415,GO:0046483,GO:0046677,GO:0046700,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0071941,GO:0072521,GO:0072523,GO:0097305,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901700
Preferred nameUOX
Descriptionurate oxidase activity
COG categoryQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG3648@1|root,KOG1599@2759|Eukaryota
Evalue6.65e-75
Seed ortholog2880.D8LM50
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUricase
Ec32 orthologEc-06_002470.1
TranscriptId351946
TrackFilteredModels1
ProteinId351624
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351624gene_14629Tribonema minus UTEX_B_3156 geneContig_95 70..4850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351624Trimin1|351624|estExt_Genemark1.C_Ctg_950001Tribonema minus UTEX_B_3156 polypeptideContig_95 70..4614 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14629_1exon_14629_1Tribonema minus UTEX_B_3156 exonContig_95 70..78 +
exon_14629_2exon_14629_2Tribonema minus UTEX_B_3156 exonContig_95 655..707 +
exon_14629_3exon_14629_3Tribonema minus UTEX_B_3156 exonContig_95 774..903 +
exon_14629_4exon_14629_4Tribonema minus UTEX_B_3156 exonContig_95 1428..1567 +
exon_14629_5exon_14629_5Tribonema minus UTEX_B_3156 exonContig_95 2241..2417 +
exon_14629_6exon_14629_6Tribonema minus UTEX_B_3156 exonContig_95 3712..3910 +
exon_14629_7exon_14629_7Tribonema minus UTEX_B_3156 exonContig_95 4582..4850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14629CDS_14629Tribonema minus UTEX_B_3156 CDSContig_95 70..78 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14629UTR3_14629Tribonema minus UTEX_B_3156 three_prime_UTRContig_95 4615..4850 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14629 ID=mRNA_14629|Name=jgi.p|Trimin1|351624|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=977bp|location=Sequence derived from alignment at Contig_95:70..4850+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCACGCACTGTTCCTGGATACCTACCCCCAGCGGTTGACGAACCG
CACTCTATACAGGCACTTCCTGGATACCTACCCCCAGCTGGTGACGTTCT
GCCGCGTCATTGTCAAGCAGGACATCTGGGAGCGCGTGCAGGTGCCCGAC
TCGCGCGGCGTGGTGACGGAGCACAACCACGCCTTCAAGAAGGTTGGCCC
TCACTACACGTATGCGCGAGTGGAGGCCCCTCGCGGCGCGCCCATGCGCC
TGTGGGGCGGCTGCAAGGGCTACACGCTGCTCAAGACCACGCAGAGCTCG
TTCGTCGACTTCCACAAGGACCCTTACACCAGCCTCCCGCAGGCCACGGA
CCGCCTCATGGGCAGCAACTTTGACTCCGAGTGGACGTACACGCCCGACA
CGGTCGCCGCCGCGGTGTCCGGCCGCGTTAACTTTGTCGCGATTCGTGAC
CAGATCCTGGACACCATGACCAAGACGTTCGCCGGCCCTGCTGACGTCGG
AGTGCCTAGCGCCTCGGTGCAGGTGACCCTGTACCAGATGGGCGGCGCGG
TGCTGAGCATTGCCCCCCAGGTGACGGACATCACCCTGTACATGCCCAAC
GTGCACAACATGCCCTTTGACCTGGCCAAGCTTGGCATGAGCAACACGGA
CCACACGGGCAACATCGACATTCTGTACCCGATCGACGAGCCGCACGGCA
TCATCCAGGCGACCATCGTCAGGCCTGGCGCCAAACTGTAAGCAGGCGCG
CGCACACATGCAGGCGAAATGCACATGGCTCAGCAGGGCGGCTGCGCTCG
CGCATAGCGCCGCCCCCCTCCCCCCCGCAGCAGGGCTGCGCGGTTTCCGG
TCACACACAACAGCAAAAAGAGCGTAGGAGAAAACCAACATAAAAAGAGA
ACAGAGTCATTGTTGTGTTGTTCCGAGTGCATGCGTATCCCGGTGGTTCC
CATGGGCTGCCCACTCCTCTCGTGCGC
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protein sequence of jgi.p|Trimin1|351624

>Trimin1|351624|estExt_Genemark1.C_Ctg_950001 ID=Trimin1|351624|estExt_Genemark1.C_Ctg_950001|Name=jgi.p|Trimin1|351624|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=247bp
MVHALFLDTYPQRLTNRTLYRHFLDTYPQLVTFCRVIVKQDIWERVQVPD
SRGVVTEHNHAFKKVGPHYTYARVEAPRGAPMRLWGGCKGYTLLKTTQSS
FVDFHKDPYTSLPQATDRLMGSNFDSEWTYTPDTVAAAVSGRVNFVAIRD
QILDTMTKTFAGPADVGVPSASVQVTLYQMGGAVLSIAPQVTDITLYMPN
VHNMPFDLAKLGMSNTDHTGNIDILYPIDEPHGIIQATIVRPGAKL*
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mRNA from alignment at Contig_95:70..4850+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14629 ID=mRNA_14629|Name=jgi.p|Trimin1|351624|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4781bp|location=Sequence derived from alignment at Contig_95:70..4850+ (Tribonema minus UTEX_B_3156 )
ATGGTGCACGTGCCACCCGTTACATCATTATCATACACTCCGAAGTATAT
ATGATGCATACACATGTATGTACATGTATGTGTGTATATGAAAACGAATC
AAAAGATTGTAGAGCTGTAGGTGACAAGGGATGGTTAGCCGCGAGTGCCT
TCCACCAATAGGCCGCTGCTGCAGCAATTGGCCACGAGTCGAACAGTATA
TATCATATTGTGTACTTTGAAGTATGTATGTATGCGCGCCTGCCACGTCG
TCGCCAGGTTGTCACAGAGCGCCATCAGATCCGCTGATGTCTCCTTGCCG
CTCGTTGACTAGGTCAGACGTAGCCAGCAGATCCTGCGTCTCGGTGAACC
AAATGAGATCCCCGGCACTACGAATGAGCCACTGCCATTTCCCCCTCCTG
ACCAAATGATCACACATATGCACGTCGAAGTAACACGATTTTTTTTTTAA
TGCACATCCACGCTTGCTTCTGGAACCTTAGAACAGCACCCCATGCCCTA
CCACCTCTCTATCAATTCCCTTTCGAAGCCTCACTAACACAGCAATCTAT
ACCCACCCCCTCTATACATACCCCCCCCCCCTCAGGCACTGTTCCTGGAT
ACCTACCCCCAGCGGTTGACGAACCGCACTCTATACAGGTTGACTTAACA
GCACTCTATACCCAACCCCCCTCTAAACATACCCCCCCCCCCCCCCCCCC
TCAGGCACTTCCTGGATACCTACCCCCAGCTGGTGACGTTCTGCCGCGTC
ATTGTCAAGCAGGACATCTGGGAGCGCGTGCAGGTGCCCGACTCGCGCGG
CGTGGTGACGGAGCACAACCACGCCTTCAAGAAGGTAAAACTTACTTGCT
TTACAGGTTGGCAGTGTGGAGGTGCACTGCGTGGTTGCAGTGGTGGGTTA
CGATGGTAAAAGATACCGTGCACTGCGTGGTTGCGGCTTTATTAATAAGA
GATACTAAGCACGGCGTGGTTGCAGCGGCAGTTCAAGAAAGTACCAGATA
TTTATTGATGAACGAACAGTTGGGTGCACCGCCGAGGGCTCAATCAGACC
GACCGACATAGGCTTGTCATCACCTGTTCACGATGTGAACGCGCAGCAAA
TTGTCGTTTGTCGAGATCCTGATCCTCCCGGCCCCGAGGATTGTGTGCGC
GGTAAACACAGGTGGCGCGCCCATGCATACATACGCACCCTCCAAGCGAC
TCCCATGCGGCTAACCAGTCATTGAAATGTGTTACTTCAGGTGGGCCCTC
ACTACATGTATGCGCGAGTGGAGGCCCCTCGCGGTGCCCCCATGCATACA
TACCCACCCTCCAAGTGACTCATCACTCATTATGGTACTCTGTATTGTAC
TACTACAGGTTGGCCCTCACTACACGTATGCGCGAGTGGAGGCCCCTCGC
GGCGCGCCCATGCGCCTGTGGGGCGGCTGCAAGGGCTACACGCTGCTCAA
GACCACGCAGAGCTCGTTCGTCGACTTCCACAAGGACCCTTACACCAGGT
GCGTGCTGTGAAATTACCCTGGTGTGCCGAAAGTTCACGCTGTTGACAGA
ATTATCCTGGTGTGCGGAGATGGTGTGCCGAGAATTCACGCTGTTAACAG
GATTAGTCAATGAGGTTCATGAAAACACGCTGCGCAAGACCACACAGAGC
TCGTTCATCGTCTTTCACAAGGACCCTTACACCACGTGCGTGCTGCGAAG
TCACCCTGGTTTGCCGAGAATTCACCCTGTTCACATGATTGATGGGAGAG
ATTCATGAATACATGCTGCTCAGGACCACGCAGAGCTCCTTCATCGACGT
AACTTCTGAAATTTCACGCGGTTGACATGTACGGTGGTTGGGAATGATGA
AGGCGTGCTGCTCAAGACCACACAGAGCTCGTTTTGTCCCTTTTTGCTAA
TAACATTTACACCATGTGAGCGCCATGAATGCATGCGTATTGCAATTACT
TTCAAAAATCAATGAGGCTCCCCTCGACTGCAACGTGTCTGGCTGCAGAT
GGCACGCCGTGCTCGCTGAGAACATACTGCGGATGAAAGCTCAAGCGGCT
CTGCAAGTGCAGTGCAAAGCGCAAGAACACAAAAATGACGCCTCTGCCCT
CATTGCGCCACTCACCTTTCTCACTCCACTTTCCACCCACTTTCCTTTCA
TTTTCCGCCCTCTGCGCGCAGCCTCCCGCAGGCCACGGACCGCCTCATGG
GCAGCAACTTTGACTCCGAGTGGACGTACACGCCCGACACGGTCGCCGCC
GCGGTGTCCGGCCGCGTTAACTTTGTCGCGATTCGTGACCAGATCCTGGA
CACCATGACCAAGACGTTCGCCGGCCCTGCTGACGTCGGAGTGCCTAGGT
GAGCTGCCTGGTTGTAGTTACAGTTTGTCCAAAGAGTTGAAGTTTGTACA
TGAAGTAAGTCAAACTTTGTTGCCGTGCGCGACCAGATCCTGCACACCAT
GACCAAGACGTTTGCCAGCCCCGCTAACGTCAGAGTGCTCAGGTGAGCCG
GTGTAAAAGATGAGGTTAGTGAAAAGTTGAAGTTTTGCACATTCGTGAAG
TAAGTGGACTTGGTCGCCGTGCGCAACCAGATTCTCGACACCATGAACAA
GTCGTTTGCAGCCCCCGCTGACGTCGGAGTGCCTAGGTAAGCTGCCTTGA
TTATCAGTACGTTATGTGTCAAGCTTAAGTTTGCGCATGAACTCTGTCGC
CGTGCGCGACCAGATCCTGGACACTTGACCAGGACATTCGCCGGCCCTGC
TGACATAGGTGTGCCTAGGTAAGCTGCCTTGACGATAAGTGAGTTATGTG
AAAAGTTGAAGTTTTGTACATGAAGTATGTGAACTTCGTCGCCGCGCGCG
ACCAGATCGTGCACACCATGACCAAGACGATCGCCAGCCCCGCTGACGTC
GGAGTGCCTAGGTAAGCGGCCTTGATTATAAGCGGCAAGTTGATGGTTTG
CGCGTGAAGTATGTGAACTTTGTTGCGGTGCGCGTACATGCATTTGAGAG
CAAGTTGTGTCCCCCTTCGCCACCCTGGTTGCAGCGCCTCGGTGCAGGCG
GCCCGGATGGGCGGCACCGTGCTGAGCACTGCTACTCAGGTCACTTTTCG
TGCATACATGCGCTGTTGAGTCAGCTCTAGTAAGAGTTGAGTAAGGCTGT
TCTGCTTGAAGTTTGTTGGAGTTCTGACCACATCTAGAGCGCGGCTCTAA
CATATTATCGTTTCCACTCATTTGTTGCATCTGCCATGTTATATGCACGA
GGGCCATGTGGCTTTGTCCCCTCAACTTAAGTTTGAGTTGTCCCCTCAAC
TTCTCACACTCCAATGCATGAATTTGAAAGGCCCCCCCCCCCCCCCCCCC
CCCGCGTGCAGCGCTTCGGTGCAGGTGACCCTGCACCAGATGGGCGGCAC
CGTGCTGAGCACTGCCCCTCCACAATTCGCGCATACATGCACAGTTGACT
CAGCTAGTAAGATTTGAGTAAGCGTGTTCTGCTTGAAGCTTCAGTAGTTG
GAGTTCTGATCAGGTCTTCGCATAGATGTCATCCTTTCCACTCATTCGTT
GCATCTTCCATGCTTCACCGCATGAAGTCAAAAGTCATTCCCTTAACATT
CTATACTTCTCCTACCCCCTACGCCCCCCCCCCCACTTGCAGCGCCTCGG
TGCAGGTGACCCTGTACCAGATGGGCGGCGCGGTGCTGAGCATTGCCCCC
CAGGTGACGGACATCACCCTGTACATGCCCAACGTGCACAACATGCCCTT
TGACCTGGCCAAGCTTGGCATGAGCAACACGGACCACACGGGCAACATCG
ACATTCTGTACCCGATCGACGAGCCGCACGGCATCATCCAGGTATGCATA
CATCAACATCGCGATAGCCACATGCCCAATGTCAAGCGCTCCAGCAGCAG
ATACGATCAATTTACTGTGAAGAATGCATTTGAAAAGCTTTGCATGAGCA
ACACGGACCACACGGGCAACATAGAAATACTGTACCCCATCGACGAGCCC
CATGGCATGTACTTAAGAGTGCACATGTAAAGTGGTTACCATTGAAGCCC
TTCGCATCATCAACTTTGTTGCGGTTTAGTTTGTACATGTAACGGAATGT
GCCCAAGTTCTCTGTGGCATCAGTTAAGAAAACAACAGTTTCGGCTGTGA
TTTGTTTCTGAATGCCGGAAGCAACGGTCGTGACGGTGTAGCCCGCGGTG
ATGAGCAGGAAGTGAACGTCACAGCACTATAACAGCTCATCACTGGTGGC
TTTATGTCAAGATGGCAGCCATGGCAGATGAGCACACAAAATTGGACGGA
GTGGTAGCTACTGAGCAAGCACTTTTCAGCACGATAACTGCAACACCTCA
GCCATGCCCCACGCCAACGCTTAACGCTATCTCCCGTCTGAACACCTGAC
GTCTATTTTCTCTATCGGACAATGTGGCAGAGCTGTGATCCAGTTGCACT
GAGCTGCCAATAAACATGATGCAGATTACCAAACAACATGCGCGCTTGTT
TTTGCGATGCAGGCGACCATCGTCAGGCCTGGCGCCAAACTGTAAGCAGG
CGCGCGCACACATGCAGGCGAAATGCACATGGCTCAGCAGGGCGGCTGCG
CTCGCGCATAGCGCCGCCCCCCTCCCCCCCGCAGCAGGGCTGCGCGGTTT
CCGGTCACACACAACAGCAAAAAGAGCGTAGGAGAAAACCAACATAAAAA
GAGAACAGAGTCATTGTTGTGTTGTTCCGAGTGCATGCGTATCCCGGTGG
TTCCCATGGGCTGCCCACTCCTCTCGTGCGC
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Coding sequence (CDS) from alignment at Contig_95:70..4850+

>mRNA_14629 ID=mRNA_14629|Name=jgi.p|Trimin1|351624|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=741bp|location=Sequence derived from alignment at Contig_95:70..4850+ (Tribonema minus UTEX_B_3156 )
ATGGTGCACGCACTGTTCCTGGATACCTACCCCCAGCGGTTGACGAACCG
CACTCTATACAGGCACTTCCTGGATACCTACCCCCAGCTGGTGACGTTCT
GCCGCGTCATTGTCAAGCAGGACATCTGGGAGCGCGTGCAGGTGCCCGAC
TCGCGCGGCGTGGTGACGGAGCACAACCACGCCTTCAAGAAGGTTGGCCC
TCACTACACGTATGCGCGAGTGGAGGCCCCTCGCGGCGCGCCCATGCGCC
TGTGGGGCGGCTGCAAGGGCTACACGCTGCTCAAGACCACGCAGAGCTCG
TTCGTCGACTTCCACAAGGACCCTTACACCAGCCTCCCGCAGGCCACGGA
CCGCCTCATGGGCAGCAACTTTGACTCCGAGTGGACGTACACGCCCGACA
CGGTCGCCGCCGCGGTGTCCGGCCGCGTTAACTTTGTCGCGATTCGTGAC
CAGATCCTGGACACCATGACCAAGACGTTCGCCGGCCCTGCTGACGTCGG
AGTGCCTAGCGCCTCGGTGCAGGTGACCCTGTACCAGATGGGCGGCGCGG
TGCTGAGCATTGCCCCCCAGGTGACGGACATCACCCTGTACATGCCCAAC
GTGCACAACATGCCCTTTGACCTGGCCAAGCTTGGCATGAGCAACACGGA
CCACACGGGCAACATCGACATTCTGTACCCGATCGACGAGCCGCACGGCA
TCATCCAGGCGACCATCGTCAGGCCTGGCGCCAAACTGTAA
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