mRNA_14597 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351503
Unique NamemRNA_14597
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351503 vs. uniprot
Match: A0A835YRW5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW5_9STRA)

HSP 1 Score: 298 bits (763), Expect = 5.780e-102
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 3 
Query:  135 MEEDEDAPHPLRTAEWRMSTRKLLGFKREDEYFTFHKDGTVESPGKADGRWWFDVGGLHWELKEPSATATHYRAELHWNIFGTQPRMFRGTVTRDRSPSSFMPPWLLRPVISTFTGYGIGDDTADTTYKHRQSESFV 545
            MEEDEDAPHPLRTAEWRMSTRKLLGFKREDEYFTFHKDGTVESPGKADGRWWFDVGGLHWELKEPSATATHYRAELHWNIFGTQPRMFRGTVTRDRSPSSFMPPWLLRPVISTFTGYGIGDDTADTTYKHRQSESFV
Sbjct:    1 MEEDEDAPHPLRTAEWRMSTRKLLGFKREDEYFTFHKDGTVESPGKADGRWWFDVGGLHWELKEPSATATHYRAELHWNIFGTQPRMFRGTVTRDRSPSSFMPPWLLRPVISTFTGYGIGDDTADTTYKHRQSESFV 137
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BLAST of jgi.p|Trimin1|351503 vs. uniprot
Match: D7FGX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX5_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 6.960e-48
Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 3 
Query:  159 HPLRTAEWRMSTRKLLGFKREDEYFTFHKDGTVESPGKADGRWWFDVGGLHWELK---EPSATATHYRAELHWNIFGTQPRMFRGTVTRDRSPSSFMPPWLLRPVISTFTGYGIGDDTADTTYKHRQS 533
            HPLRT +W +  R     +RE E  TFH++GT+ S     G WWFDVGGL+W++      + T  H++AELHWN+FG+QPRMFRGT+TRDR P+S +PPWL RPV+ +F G G+GDDTADT+Y+HRQ+
Sbjct:   65 HPLRTQDWTLQIRSSPWTRREQEV-TFHRNGTMSSNDGNKGEWWFDVGGLYWDVNTTIRAAPTVLHHKAELHWNVFGSQPRMFRGTITRDRLPNSPLPPWLFRPVVGSFIGSGVGDDTADTSYRHRQT 191
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BLAST of jgi.p|Trimin1|351503 vs. uniprot
Match: A0A0G4EMR7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMR7_VITBC)

HSP 1 Score: 115 bits (287), Expect = 4.450e-29
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 3 
Query:  141 EDEDAPHPLRTAEWRMSTRKLLGFKREDEYFTFHKDGTVESPGKADGRWWFDVGGLHWELKEPSATATHYRAELHWNIFGTQPRMFRGTVTRDRSPSSFMPPWLLRPVISTFTGYGIGDDTADTTYKHR 527
            E +D+PHPLR  EW++  R+ L  +R +    F +DG++++     G W  D  G+ WE    + T   Y AE+HWN+FG+QPRM++G +TRDR         L RPVI TFTG G G DTAD +Y+ R
Sbjct:   55 EADDSPHPLRMEEWKLRVRRGLFRRRSEMRINFRRDGSLQTSDGHKGEWRLDKFGVMWEFLVDNTTH-RYMAEVHWNVFGSQPRMYKGVITRDRRAPIRAD--LFRPVIGTFTGIGCGTDTADVSYRDR 180
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BLAST of jgi.p|Trimin1|351503 vs. uniprot
Match: A0A7S2V1B7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1B7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.570e-21
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 3 
Query:  162 PLRTAEWRMSTRKLLGFKREDEYFTFHKDGT-----VESPGKADGRWWFDVGGLHWELKEPSATATHYRAELHWNIFGTQPRMFRGTVTRDRSPSSFMPPWLLRPVISTFTGYGIGDDT 503
            PLR  +W +  R  L  +++     +H  G      + +     G W  +  GL W+++      T+Y A +H N FG  P+MFRG V RDR  SSF+PPWL RPV++TF G+G+G+DT
Sbjct:   78 PLRMEKWEIIFRTGLSERKQSSIQFYHTGGEDDKGDLRTDEGETGDWAMEKLGLQWQIRRNGVAYTYY-ALVHHNTFGAAPKMFRGVVVRDRFASSFLPPWLFRPVVATFHGHGVGEDT 195
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BLAST of jgi.p|Trimin1|351503 vs. uniprot
Match: A0A4D9CXA1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXA1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.920e-18
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 3 
Query:  243 KDGTVESPGKADGRWWFDVGGLHWELKEPSATATHYRAELHWNIFGTQPRMFRGTVTRDRSPSSFMPPWLLRPVISTFTGYGIGDDT 503
            K   +  P    G+W +D  GL+WEL+E       Y AEL W+ FG +P+M  G V R+R P S +PPWLLRPV+ TF+G G G DT
Sbjct:   58 KKAKMAEPPTLQGKWKYDKYGLNWELEE-GGLRYFYHAELIWHSFGDRPKMHCGVVVRNRGPGSPLPPWLLRPVVGTFSGLGNGTDT 143
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351503 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YRW5_9STRA5.780e-102100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FGX5_ECTSI6.960e-4855.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4EMR7_VITBC4.450e-2943.41Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S2V1B7_9STRA7.570e-2138.66Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9CXA1_9STRA2.920e-1847.13Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_92contigContig_92:224495..225905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351503|estExt_Genemark1.C_Ctg_920023
Max annot lvl2759|Eukaryota
EggNOG OGs2ETV3@1|root,2SW48@2759|Eukaryota
Evalue4.42e-49
Seed ortholog2880.D7FGX5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_000990.1
TranscriptId351825
TrackFilteredModels1
ProteinId351503
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351503gene_14597Tribonema minus UTEX_B_3156 geneContig_92 224495..225905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351503Trimin1|351503|estExt_Genemark1.C_Ctg_920023Tribonema minus UTEX_B_3156 polypeptideContig_92 224495..225771 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14597_2exon_14597_2Tribonema minus UTEX_B_3156 exonContig_92 224495..224516 -
exon_14597_1exon_14597_1Tribonema minus UTEX_B_3156 exonContig_92 225380..225905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14597CDS_14597Tribonema minus UTEX_B_3156 CDSContig_92 225380..225771 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14597UTR5_14597Tribonema minus UTEX_B_3156 five_prime_UTRContig_92 225772..225905 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14597 ID=mRNA_14597|Name=jgi.p|Trimin1|351503|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=548bp|location=Sequence derived from alignment at Contig_92:224495..225905- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCAGGACAGCTCGGCGAGGGCTGCGTGCGATCACGCGACCGCGGCAGCTG
GCCTATCGCCATGCAGCCGCACAGGAGCACAACGATGGCGATGTACTGTT
CCATGTCGACCTGCTGGATGACGAAGCCGAAGTGATGGAGGAGGATGAGG
ACGCACCTCACCCGCTTCGAACCGCAGAGTGGCGCATGTCAACTCGCAAG
CTGCTGGGGTTCAAGAGGGAGGACGAGTACTTCACATTTCACAAAGACGG
CACAGTAGAGAGCCCCGGGAAGGCAGACGGCAGGTGGTGGTTCGATGTCG
GCGGTCTGCATTGGGAGCTCAAGGAGCCCAGTGCCACGGCTACGCATTAT
AGGGCGGAGCTGCACTGGAACATTTTCGGCACCCAGCCTCGCATGTTTCG
GGGAACAGTAACGCGAGACAGAAGTCCGTCCAGCTTCATGCCGCCGTGGC
TGCTGCGCCCGGTGATCAGCACTTTCACGGGCTATGGCATTGGCGATGAC
ACAGCTGACACCACGTACAAGCACAGGCAGTCTGAGTCGTTCGTTTAG
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protein sequence of jgi.p|Trimin1|351503

>Trimin1|351503|estExt_Genemark1.C_Ctg_920023 ID=Trimin1|351503|estExt_Genemark1.C_Ctg_920023|Name=jgi.p|Trimin1|351503|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=138bp
MEEDEDAPHPLRTAEWRMSTRKLLGFKREDEYFTFHKDGTVESPGKADGR
WWFDVGGLHWELKEPSATATHYRAELHWNIFGTQPRMFRGTVTRDRSPSS
FMPPWLLRPVISTFTGYGIGDDTADTTYKHRQSESFV*
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mRNA from alignment at Contig_92:224495..225905-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14597 ID=mRNA_14597|Name=jgi.p|Trimin1|351503|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1411bp|location=Sequence derived from alignment at Contig_92:224495..225905- (Tribonema minus UTEX_B_3156 )
CCAGGACAGCTCGGCGAGGGCTGCGTGCGATCACGCGACCGCGGCAGCTG
GCCTATCGCCATGCAGCCGCACAGGAGCACAACGATGGCGATGTACTGTT
CCATGTCGACCTGCTGGATGACGAAGCCGAAGTGATGGAGGAGGATGAGG
ACGCACCTCACCCGCTTCGAACCGCAGAGTGGCGCATGTCAACTCGCAAG
CTGCTGGGGTTCAAGAGGGAGGACGAGTACTTCACATTTCACAAAGACGG
CACAGTAGAGAGCCCCGGGAAGGCAGACGGCAGGTGGTGGTTCGATGTCG
GCGGTCTGCATTGGGAGCTCAAGGAGCCCAGTGCCACGGCTACGCATTAT
AGGGCGGAGCTGCACTGGAACATTTTCGGCACCCAGCCTCGCATGTTTCG
GGGAACAGTAACGCGAGACAGAAGTCCGTCCAGCTTCATGCCGCCGTGGC
TGCTGCGCCCGGTGATCAGCACTTTCACGGGCTATGGCATTGGCGATGAC
ACAGCTGACACCACGTACAAGCACAGGTCAAGTGGTGAGCCTGCTTCAGC
ACCGAGAGACCGACGCTTTGACAGACACTAGTTTCAATCATAGTCACTCT
TTCACGAGGACCAACATGTCTCGCTTTGCGCTACTGCTTCATTGCTGGTG
CATCTGGTGTGAGCACTGTGCGCATACGGCACTTCCTTGTGATGAATCGA
CTCCGCATCCTATTGTGAACCTTGGTGATGTACTCCTGGTTTATGTACAG
AGGTGTTGTGCGTTATGTATCATGTGCTGCAGATGGCCAGAGCTTGTGTC
CACGCAGTATAGAGATGTTCTGCGTTATGCATCATGTGCTGCACATGGCC
AGAGCATATGACTACACAACCCCAGCAACTTGCCATGCGCGTGACCCGCA
AGTAATGCTCCTGAAGCAGGCATCGGAATTTTGACATGAAGGTAATTCAG
GTTGCGGTGACTTGGCCGTCAAGGTGGAGGTTGCTGCACAAGCAAGCCTC
TAACCGTCCGAACTCGTGTTATCAATTCATCTACTCCCCTCACAGATGTT
TCTTTCACAGACAAGAGTTGTCGTGCACCGACGCAGCATGAAAACCATTG
CATTGTAGGCGATGCATGACCCTGCATACTGCAAAATCATGCCAGATGAC
AGGTGCACTCGACATCGGGGGTGACAATCTGCTCCATCCCCAATGGCAAC
ACGTGAGAAAGCTGTCATTGCCATTCCTTGAACTTCCAGATCGCTCCACT
GCTGACCATCAACGTGAATACTTCTATTTGGAAGTCCGGGATGCAGGTGC
GATGGATCGGGCAAGACAAAAAAGAAACTTGCTTTGGTGTAAATACATCT
GATGAGCTGTCAGATGCGTCTCATGGCCTGCAATGCCAGGCAGTCTGAGT
CGTTCGTTTAG
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Coding sequence (CDS) from alignment at Contig_92:224495..225905-

>mRNA_14597 ID=mRNA_14597|Name=jgi.p|Trimin1|351503|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=414bp|location=Sequence derived from alignment at Contig_92:224495..225905- (Tribonema minus UTEX_B_3156 )
ATGGAGGAGGATGAGGACGCACCTCACCCGCTTCGAACCGCAGAGTGGCG
CATGTCAACTCGCAAGCTGCTGGGGTTCAAGAGGGAGGACGAGTACTTCA
CATTTCACAAAGACGGCACAGTAGAGAGCCCCGGGAAGGCAGACGGCAGG
TGGTGGTTCGATGTCGGCGGTCTGCATTGGGAGCTCAAGGAGCCCAGTGC
CACGGCTACGCATTATAGGGCGGAGCTGCACTGGAACATTTTCGGCACCC
AGCCTCGCATGTTTCGGGGAACAGTAACGCGAGACAGAAGTCCGTCCAGC
TTCATGCCGCCGTGGCTGCTGCGCCCGGTGATCAGCACTTTCACGGGCTA
TGGCATTGGCGATGACACAGCTGACACCACGTACAAGCACAGGCAGTCTG
AGTCGTTCGTTTAG
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