mRNA_14591 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A836C7X1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7X1_9STRA) HSP 1 Score: 357 bits (915), Expect = 2.490e-124 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1
Query: 1 MSEVWARLTQEEEELTRVRSEIADLKRALDASPFAPLTDQLSSQQAVQERLERLQARLPTLRKLAFKAELLLPVAVVWSELETSSQEEKFLKMKAWGQPLKLVASCPGEDIIFLQGKKGTAVDLTSTCHLLPTMRLKAVAFPLVSHGDRKPVMVDGFVSAITPSRRVALGVYHAATPTLSGGVVLD 558
MSEVWARLTQEEEELTRVRSEIADLKRALDASPFAPLTDQLSSQQAVQERLERLQARLPTLRKLAFKAELLLPVAVVWSELETSSQEEKFLKMKAWGQPLKLVASCPGEDIIFLQGKKGTAVDLTSTCHLLPTMRLKAVAFPLVSHGDRKPVMVDGFVSAITPSRRVALGVYHAATPTLSGGVVLD
Sbjct: 1 MSEVWARLTQEEEELTRVRSEIADLKRALDASPFAPLTDQLSSQQAVQERLERLQARLPTLRKLAFKAELLLPVAVVWSELETSSQEEKFLKMKAWGQPLKLVASCPGEDIIFLQGKKGTAVDLTSTCHLLPTMRLKAVAFPLVSHGDRKPVMVDGFVSAITPSRRVALGVYHAATPTLSGGVVLD 186
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A836C874_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C874_9STRA) HSP 1 Score: 122 bits (307), Expect = 4.950e-29 Identity = 61/96 (63.54%), Postives = 76/96 (79.17%), Query Frame = 1
Query: 256 QEEKFLKMKAWGQPLKLVASCPGEDIIFLQGKKGTAVDLTSTCHLLPTMRLKAVAFPLVSHGDRK------PVMVDGFVSAITPSRRVALGVYHAA 525
++EKFL+MKAWGQPLKLVASCPGED+IFLQG+KGTA+DL S+ H+L M+LKAV FPL H + + P+++DGFVSA+ PS RVALG AA
Sbjct: 493 KKEKFLQMKAWGQPLKLVASCPGEDVIFLQGRKGTAIDLASSWHVLDRMKLKAVTFPLGPHENYRELARTPPLVMDGFVSAMAPSGRVALGSCSAA 588
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A835YQ22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ22_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 5.690e-15 Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 1
Query: 256 QEEKFLKMKAWGQPLKLVASCPGEDIIFLQGKKGTAVDLTSTCHLLPT-MRLKAVAFPLVSHGD-------RKPVMVDGFVSAITPSRRVALGVYHAATPTLSGGVVLD 558
Q E+FL+M+AWG PLKLVAS P ED+IF+QG+ G +DL T L T M+L +AFP+ D P+ G +S IT ++R AL Y P GG V D
Sbjct: 136 QNEEFLEMEAWGTPLKLVASFPAEDLIFVQGEPGPCIDLAHTRGALWTKMKLTVLAFPVPPFIDLNDDVAHEHPLASSGELSGITITQRAALAKYSPELPPSPGGAVFD 244
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A835YSB3_9STRA (DUF218 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSB3_9STRA) HSP 1 Score: 549 bits (1415), Expect = 1.420e-194 Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 2
Query: 83 MIRARPRGAVVGHSVSFLMQVVAARALGSVAANHVLPPAVTGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLPARDRPGFQRDLNELLERYGS 1114
MIRARPRGAVVGHSVSFLMQVVAARALGSVAANHVLPPAVTGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLPARDRPGFQRDLNELLERYGS
Sbjct: 1 MIRARPRGAVVGHSVSFLMQVVAARALGSVAANHVLPPAVTGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLPARDRPGFQRDLNELLERYGS 344
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A7S0V9E4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V9E4_9CRYP) HSP 1 Score: 155 bits (392), Expect = 1.130e-40 Identity = 100/301 (33.22%), Postives = 138/301 (45.85%), Query Frame = 2
Query: 200 VTGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLPARDRPGFQRDLNELLE 1102
VTG++VHG HL GW+ +++GD S Q+LGR+ L EDP VVF +G SE+DGK+EG+ DYL+ ++ RL+ F F DL L + R V +T NT +EL + R++LVSSPTH+PRC RDA ++ GTA + WA +L+C P T + G+ P DVA+VEPPHRGDRD LD L G++NR++++P R R G L + LE
Sbjct: 86 VTGIIVHGCHLHTDGWERIVFGDPSTQELGRVSQAALLMLEEDPVCVVFGTGGSEKDGKREGDFTRDYLLENFQRLALFN-VFAGIDLGRLERLMRERSVAETTSRNTVEELERGADILREHRIERLILVSSPTHLPRCLRDACVVY-------------------------------------------------------------GTARS--------------ERFPWAARLLVC-PSGTSYTGAKPEDVAVVEPPHRGDRDRNLDRPMLGGIINRLYAVPPRTRRGLVLQLEKQLE 309
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A7S0Y436_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y436_HEMAN) HSP 1 Score: 150 bits (378), Expect = 5.890e-39 Identity = 97/300 (32.33%), Postives = 137/300 (45.67%), Query Frame = 2
Query: 203 TGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLPARDRPGFQRDLNELLE 1102
TG+LVHG HL GW+ +++GD + Q+LGR+ L E+P VVF SG SE+DG EG+ DY ++ +L+ F + F DL+ L + R V +T NT +EL AG + V R++LVSSPTH+PRC RDA ++ GT V + W VL+ SP T + G+S DVA++EPPHRGDRD LD L G++NR++++P + R G L + LE
Sbjct: 53 TGILVHGCHLHTDGWERIVFGDPATQELGRVAQAALLMMEENPVCVVFGSGGSEKDGMMEGKFTRDYFFENFQKLARF-DVFAGADLERLERLMRERSVAETVSKNTVEELELAGEILRKHNVERLILVSSPTHLPRCLRDACVVY-------------------------------------------------------------GT--------------VRSEKCPWGARVLV-SPSGTSYEGASAGDVAVIEPPHRGDRDPALDKPLLSGVINRLYAIPPKKRRGLVLQLEKQLE 275
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A7S1WQL9_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WQL9_ALECA) HSP 1 Score: 131 bits (329), Expect = 2.020e-32 Identity = 93/293 (31.74%), Postives = 124/293 (42.32%), Query Frame = 2
Query: 194 PAVTGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLPARDRPG 1072
P TG+LVHG HL A GW+ ++WG LGRLPH V LA E +VV+F +GASE+DGKKE E YL HW L+ F+ R L+ A + VVD + NT +E+ F + + VSSPTH+PRC A ++ G +A SP DTC+ G++ DV +VEPPHRGDRD +LD++ H LV R + +P R+R G
Sbjct: 17 PRGTGILVHGCHLKADGWEQIVWGSPPHD-LGRLPHAVLLAWEEQASVVMFGTGASEKDGKKESEYTIQYLWDHWHALAEFEPLHR-VPLEEAEALMRRIAVVDARTQNTDEEVREGLRLFQESNCDHAIFVSSPTHLPRCLACACK-------------------------------------------------------------------------IVEQEPELFEGPIYA------SPSDTCYEGAAAGDVVVVEPPHRGDRDKSLDALKFHELVRRCYGVP-RERKG 227
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A2E1VUF3_9BACT (DUF218 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E1VUF3_9BACT) HSP 1 Score: 122 bits (306), Expect = 4.410e-29 Identity = 69/150 (46.00%), Postives = 92/150 (61.33%), Query Frame = 2
Query: 203 TGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASER----DGK----KEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDA 628
TG+LVHG HLDA W ++WG +LGR P V +A +E V+VF +GASER DGK KEGE DYL++H+ L+ F AF DL+AL ++ V +++ NTR+E+ A F GV R++LVSSPTH+ RC RDA
Sbjct: 3 TGVLVHGCHLDAYDWRGIVWGYPDAGELGRAPKGVLVAHQEQADVLVFGTGASERVVDRDGKRVVMKEGEYTLDYLLQHFDELADFP-AFGKVDLEALRRQIESTAVAESRSQNTREEVVEAAEHFLERGVERMILVSSPTHISRCVRDA 151
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A7S0YME2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YME2_9CRYP) HSP 1 Score: 124 bits (310), Expect = 1.780e-28 Identity = 63/147 (42.86%), Postives = 88/147 (59.86%), Query Frame = 2
Query: 200 VTGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALW 640
VTG++VHG HL GW+ +++GD S Q+LGR+ L EDP VVF +G SE+DGK+EG+ DYL+ ++ RL+ F F DL L + R V +T NT +EL + R++LVSSPTH+PRC RDA ++
Sbjct: 86 VTGIIVHGCHLHTDGWERIVFGDPSTQELGRVSQAALLMLEEDPVCVVFGTGGSEKDGKREGDFTRDYLLENFQRLALFN-VFAGIDLGRLERLMRERSVAETTSRNTVEELERGADILREHRIERLILVSSPTHLPRCLRDACVVY 231
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A7S0HX73_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HX73_9CRYP) HSP 1 Score: 117 bits (294), Expect = 1.070e-27 Identity = 82/265 (30.94%), Postives = 117/265 (44.15%), Query Frame = 2
Query: 263 GDESQQQLGRLPHFVKLAAREDPAVVVFSSGASE-RDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLP 1054
G E +LGR+P V +A E+ AVV+F +G S+ DG EGEV ++ ++ RL +FK+ F+D DL L R+ C V+T+ +NT QEL G V +++LVSSPTH+PRC RDA ++ G S ++A ++ C P DTC+ S+ DVAIVEPPHRGDR+ D PL+ +N+ F +P
Sbjct: 1 GREELNELGRIPQAVLVAYHEEAAVVLFGTGGSKSEDGVLEGEVTMQFMFENFERLKNFKQ-FQDIDLGRLRERMAEICKVETKSLNTLQELEMCGEIMHNQQVQKIILVSSPTHLPRCIRDAKKVFDG------------------------------------------------------------------------------SKFSFANAIFAC-PSDTCYMNSTVEDVAIVEPPHRGDREKEFDRWPLYKYLNKFFKVP 185
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A1F5PJ44_9BACT (Uncharacterized protein n=1 Tax=Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_50_11 TaxID=1817828 RepID=A0A1F5PJ44_9BACT) HSP 1 Score: 119 bits (297), Expect = 1.110e-27 Identity = 61/151 (40.40%), Postives = 90/151 (59.60%), Query Frame = 2
Query: 203 TGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKE-----AFRDCDLDALAARLLPRC-VVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASAL 637
T +L+HG H+DA GW+ ++WGD + LGR+P + LA E+ ++ + +GASER+GKKE ++I+ Y +RH L E +R +LLP+ +D NT QE+ AA A G+TR++LVSSPTH+ RC +DA L
Sbjct: 6 TAILIHGCHVDAEGWERIIWGDPEKGLLGRIPTGIALALSEEADLIFWGTGASERNGKKESQIIFQYALRHLEELPALFERAGRVTYRKYPTPFELEKLLPKISYIDLVTQNTAQEVEAAAAECRARGITRLILVSSPTHIGRCRQDADKL 156
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: L1J676_GUITC (DUF218 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J676_GUITC) HSP 1 Score: 118 bits (295), Expect = 2.730e-27 Identity = 62/147 (42.18%), Postives = 88/147 (59.86%), Query Frame = 2
Query: 203 TGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASER-DGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALW 640
TG+LVHG HL A GW+ + WG E +LGR+P V +A RE +V+F +G S+ DG EGE Y+ ++ RL +F+E F + DL L + C +T+ +NT QEL G + +V+LVSSPTH+PRC RDA ++
Sbjct: 65 TGVLVHGCHLQAEGWEEIAWGREETNELGRIPQAVLVAHREGADMVLFGTGGSKSSDGVMEGEYTMRYMFDNFERLKNFRE-FEEADLARLKETMRLICRSETRSLNTVQELELCGQIMHNEQIQKVILVSSPTHLPRCMRDAKVVF 210
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A7V7MMY6_9BACT (DUF218 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V7MMY6_9BACT) HSP 1 Score: 117 bits (293), Expect = 3.270e-27 Identity = 68/156 (43.59%), Postives = 91/156 (58.33%), Query Frame = 2
Query: 203 TGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGAS----ERDG----KKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLG 646
TG+LVHG HL+A W + WG + +LGR+P V +A + ++VF +GAS E DG K+EGE +L+R + L+ FK AF DL AL R+ V D +NT QE+ A F R G+ +VLVSSPTH+PRC RDA A +G
Sbjct: 3 TGVLVHGCHLEAYDWRGIAWGYPDRNELGRIPKGVLVALETNADLLVFGTGASCRLVEEDGQQIVKREGEYTLGFLLRRFEELAEFK-AFEGVDLAALRKRVEGIAVADVDSMNTEQEVRNAARMFLRQGIEGMVLVSSPTHLPRCLRDACAALVG 157 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14591 ID=mRNA_14591|Name=jgi.p|Trimin1|351497|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=558bp|location=Sequence derived from alignment at Contig_92:196003..200095- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCAGAGGTGTGGGCGCGCTTGACACAGGAAGAGGAGGAGCTGACGCGback to top protein sequence of jgi.p|Trimin1|351497 >Trimin1|351497|estExt_Genemark1.C_Ctg_920017 ID=Trimin1|351497|estExt_Genemark1.C_Ctg_920017|Name=jgi.p|Trimin1|351497|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=186bp MSEVWARLTQEEEELTRVRSEIADLKRALDASPFAPLTDQLSSQQAVQERback to top mRNA from alignment at Contig_92:196003..200095- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14591 ID=mRNA_14591|Name=jgi.p|Trimin1|351497|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4093bp|location=Sequence derived from alignment at Contig_92:196003..200095- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_92:196003..200095- >mRNA_14591 ID=mRNA_14591|Name=jgi.p|Trimin1|351497|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=558bp|location=Sequence derived from alignment at Contig_92:196003..200095- (Tribonema minus UTEX_B_3156 )back to top |