mRNA_14567 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135934
Unique NamemRNA_14567
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A835ZBS9_9STRA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS9_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.410e-36
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQV 198
            LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQV
Sbjct:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQV 66
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BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.250e-22
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 195
            LRRVFGH AFREGQ W + R + G+++LLV ATG GKSL YQLPALLLPG+TVVVSPLVSLMEDQ
Sbjct: 1350 LRRVFGHKAFREGQEWGVARAMGGQASLLVLATGTGKSLTYQLPALLLPGITVVVSPLVSLMEDQ 1414
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BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.180e-22
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 195
            LRRVFGH  FREGQ W + R + G+++LLV ATG+GKSL YQLPALLLPG+TVVVSPLVSLMEDQ
Sbjct: 1496 LRRVFGHKTFREGQEWGVARAMGGQASLLVLATGSGKSLTYQLPALLLPGITVVVSPLVSLMEDQ 1560
[Close]
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A662XQ39_9STRA (DNA helicase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQ39_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.390e-20
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 195
            LR VFGH  FR GQ WAI RVL G+ TLLV  TGAGKSL YQ PAL LPGLT+V+SPL+SLM DQ
Sbjct:  499 LRLVFGHAEFRAGQEWAISRVLRGKDTLLVLPTGAGKSLCYQFPALFLPGLTLVISPLISLMNDQ 563
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BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A453C9C7_AEGTS (DNA helicase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453C9C7_AEGTS)

HSP 1 Score: 90.9 bits (224), Expect = 5.660e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 195
            LR+VFG+ +FREGQL AI+ V+AG ST+LV  TGAGKSL YQLPA++LPGLT+VVSPL+SLM DQ
Sbjct:   61 LRKVFGYDSFREGQLEAIQNVVAGESTVLVLPTGAGKSLCYQLPAMILPGLTLVVSPLLSLMVDQ 125
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BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A453C9M6_AEGTS (DNA helicase n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453C9M6_AEGTS)

HSP 1 Score: 90.9 bits (224), Expect = 7.960e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 195
            LR+VFG+ +FREGQL AI+ V+AG ST+LV  TGAGKSL YQLPA++LPGLT+VVSPL+SLM DQ
Sbjct:  208 LRKVFGYDSFREGQLEAIQNVVAGESTVLVLPTGAGKSLCYQLPAMILPGLTLVVSPLLSLMVDQ 272
[Close]
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A453C9B3_AEGTS (DNA helicase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453C9B3_AEGTS)

HSP 1 Score: 90.9 bits (224), Expect = 8.030e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 195
            LR+VFG+ +FREGQL AI+ V+AG ST+LV  TGAGKSL YQLPA++LPGLT+VVSPL+SLM DQ
Sbjct:   90 LRKVFGYDSFREGQLEAIQNVVAGESTVLVLPTGAGKSLCYQLPAMILPGLTLVVSPLLSLMVDQ 154
[Close]
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A453C9N1_AEGTS (DNA helicase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453C9N1_AEGTS)

HSP 1 Score: 90.9 bits (224), Expect = 8.490e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 195
            LR+VFG+ +FREGQL AI+ V+AG ST+LV  TGAGKSL YQLPA++LPGLT+VVSPL+SLM DQ
Sbjct:   33 LRKVFGYDSFREGQLEAIQNVVAGESTVLVLPTGAGKSLCYQLPAMILPGLTLVVSPLLSLMVDQ 97
[Close]
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: M7Z5U2_TRIUA (DNA helicase n=6 Tax=Triticinae TaxID=1648030 RepID=M7Z5U2_TRIUA)

HSP 1 Score: 90.9 bits (224), Expect = 8.570e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 195
            LR+VFG+ +FREGQL AI+ V+AG ST+LV  TGAGKSL YQLPA++LPGLT+VVSPL+SLM DQ
Sbjct:  171 LRKVFGYDSFREGQLEAIQNVVAGESTVLVLPTGAGKSLCYQLPAMILPGLTLVVSPLLSLMVDQ 235
[Close]
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A3B6C8X3_WHEAT (DNA helicase n=17 Tax=Triticeae TaxID=147389 RepID=A0A3B6C8X3_WHEAT)

HSP 1 Score: 90.9 bits (224), Expect = 8.590e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 195
            LR+VFG+ +FREGQL AI+ V+AG ST+LV  TGAGKSL YQLPA++LPGLT+VVSPL+SLM DQ
Sbjct:  281 LRKVFGYDSFREGQLEAIQNVVAGESTVLVLPTGAGKSLCYQLPAMILPGLTLVVSPLLSLMVDQ 345
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBS9_9STRA3.410e-36100.00Helicase ATP-binding domain-containing protein (Fr... [more]
D7G8A0_ECTSI1.250e-2276.92DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JFV2_9PHAE3.180e-2275.38DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A662XQ39_9STRA3.390e-2072.31DNA helicase n=1 Tax=Nothophytophthora sp. Chile5 ... [more]
A0A453C9C7_AEGTS5.660e-2072.31DNA helicase n=1 Tax=Aegilops tauschii subsp. stra... [more]
A0A453C9M6_AEGTS7.960e-2072.31DNA helicase n=2 Tax=Aegilops tauschii subsp. stra... [more]
A0A453C9B3_AEGTS8.030e-2072.31DNA helicase n=1 Tax=Aegilops tauschii subsp. stra... [more]
A0A453C9N1_AEGTS8.490e-2072.31DNA helicase n=1 Tax=Aegilops tauschii subsp. stra... [more]
M7Z5U2_TRIUA8.570e-2072.31DNA helicase n=6 Tax=Triticinae TaxID=1648030 RepI... [more]
A0A3B6C8X3_WHEAT8.590e-2072.31DNA helicase n=17 Tax=Triticeae TaxID=147389 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_148contigContig_148:338448..338645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135934|gw1.148.43.1
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko03400
KEGG ModuleM00354
KEGG Pathwayko03040,map03040
KEGG koko:K10730,ko:K12662
EC3.6.4.12
Descriptionfour-way junction helicase activity
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0514@1|root,KOG0351@2759|Eukaryota
Evalue2.05e-23
Seed ortholog2880.D7G8A0
Hectar predicted targeting categoryother localisation
TranscriptId136256
TrackFilteredModels1
ProteinId135934
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135934gene_14567Tribonema minus UTEX_B_3156 geneContig_148 338448..338645 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14567_1exon_14567_1Tribonema minus UTEX_B_3156 exonContig_148 338448..338645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14567CDS_14567Tribonema minus UTEX_B_3156 CDSContig_148 338448..338645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135934Trimin1|135934|gw1.148.43.1Tribonema minus UTEX_B_3156 polypeptideContig_148 338448..338645 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14567 ID=mRNA_14567|Name=jgi.p|Trimin1|135934|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_148:338448..338645- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCGGCGCGTGTTCGGGCACGGCGCGTTCCGCGAAGGGCAGCTGTGGGC
GATCGAGCGCGTGCTGGCGGGGCGCAGCACGCTGCTGGTGCAGGCGACGG
GCGCGGGCAAGTCGCTCGCGTACCAGCTGCCGGCGCTGCTGCTGCCGGGG
CTGACGGTCGTGGTGTCGCCGCTCGTGTCGCTCATGGAGGACCAGGTG
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protein sequence of jgi.p|Trimin1|135934

>Trimin1|135934|gw1.148.43.1 ID=Trimin1|135934|gw1.148.43.1|Name=jgi.p|Trimin1|135934|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=66bp
LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPG
LTVVVSPLVSLMEDQV
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mRNA from alignment at Contig_148:338448..338645-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14567 ID=mRNA_14567|Name=jgi.p|Trimin1|135934|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_148:338448..338645- (Tribonema minus UTEX_B_3156 )
CTGCGGCGCGTGTTCGGGCACGGCGCGTTCCGCGAAGGGCAGCTGTGGGC
GATCGAGCGCGTGCTGGCGGGGCGCAGCACGCTGCTGGTGCAGGCGACGG
GCGCGGGCAAGTCGCTCGCGTACCAGCTGCCGGCGCTGCTGCTGCCGGGG
CTGACGGTCGTGGTGTCGCCGCTCGTGTCGCTCATGGAGGACCAGGTG
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Coding sequence (CDS) from alignment at Contig_148:338448..338645-

>mRNA_14567 ID=mRNA_14567|Name=jgi.p|Trimin1|135934|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=198bp|location=Sequence derived from alignment at Contig_148:338448..338645- (Tribonema minus UTEX_B_3156 )
CTGCGGCGCGTGTTCGGGCACGGCGCGTTCCGCGAAGGGCAGCTGTGGGC
GATCGAGCGCGTGCTGGCGGGGCGCAGCACGCTGCTGGTGCAGGCGACGG
GCGCGGGCAAGTCGCTCGCGTACCAGCTGCCGGCGCTGCTGCTGCCGGGG
CTGACGGTCGTGGTGTCGCCGCTCGTGTCGCTCATGGAGGACCAGGTG
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