Trimin1|135934|gw1.148.43.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|135934
Unique NameTrimin1|135934|gw1.148.43.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length66
Homology
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A835ZBS9_9STRA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS9_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.410e-36
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQV 66
            LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQV
Sbjct:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQV 66          
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.250e-22
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 0
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 65
            LRRVFGH AFREGQ W + R + G+++LLV ATG GKSL YQLPALLLPG+TVVVSPLVSLMEDQ
Sbjct: 1350 LRRVFGHKAFREGQEWGVARAMGGQASLLVLATGTGKSLTYQLPALLLPGITVVVSPLVSLMEDQ 1414          
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.180e-22
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 0
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 65
            LRRVFGH  FREGQ W + R + G+++LLV ATG+GKSL YQLPALLLPG+TVVVSPLVSLMEDQ
Sbjct: 1496 LRRVFGHKTFREGQEWGVARAMGGQASLLVLATGSGKSLTYQLPALLLPGITVVVSPLVSLMEDQ 1560          
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A662XQ39_9STRA (DNA helicase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQ39_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.390e-20
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 0
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 65
            LR VFGH  FR GQ WAI RVL G+ TLLV  TGAGKSL YQ PAL LPGLT+V+SPL+SLM DQ
Sbjct:  499 LRLVFGHAEFRAGQEWAISRVLRGKDTLLVLPTGAGKSLCYQFPALFLPGLTLVISPLISLMNDQ 563          
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A453C9C7_AEGTS (DNA helicase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453C9C7_AEGTS)

HSP 1 Score: 90.9 bits (224), Expect = 5.660e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 65
            LR+VFG+ +FREGQL AI+ V+AG ST+LV  TGAGKSL YQLPA++LPGLT+VVSPL+SLM DQ
Sbjct:   61 LRKVFGYDSFREGQLEAIQNVVAGESTVLVLPTGAGKSLCYQLPAMILPGLTLVVSPLLSLMVDQ 125          
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A453C9M6_AEGTS (DNA helicase n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453C9M6_AEGTS)

HSP 1 Score: 90.9 bits (224), Expect = 7.960e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 65
            LR+VFG+ +FREGQL AI+ V+AG ST+LV  TGAGKSL YQLPA++LPGLT+VVSPL+SLM DQ
Sbjct:  208 LRKVFGYDSFREGQLEAIQNVVAGESTVLVLPTGAGKSLCYQLPAMILPGLTLVVSPLLSLMVDQ 272          
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A453C9B3_AEGTS (DNA helicase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453C9B3_AEGTS)

HSP 1 Score: 90.9 bits (224), Expect = 8.030e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 65
            LR+VFG+ +FREGQL AI+ V+AG ST+LV  TGAGKSL YQLPA++LPGLT+VVSPL+SLM DQ
Sbjct:   90 LRKVFGYDSFREGQLEAIQNVVAGESTVLVLPTGAGKSLCYQLPAMILPGLTLVVSPLLSLMVDQ 154          
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A453C9N1_AEGTS (DNA helicase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453C9N1_AEGTS)

HSP 1 Score: 90.9 bits (224), Expect = 8.490e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 65
            LR+VFG+ +FREGQL AI+ V+AG ST+LV  TGAGKSL YQLPA++LPGLT+VVSPL+SLM DQ
Sbjct:   33 LRKVFGYDSFREGQLEAIQNVVAGESTVLVLPTGAGKSLCYQLPAMILPGLTLVVSPLLSLMVDQ 97          
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: M7Z5U2_TRIUA (DNA helicase n=6 Tax=Triticinae TaxID=1648030 RepID=M7Z5U2_TRIUA)

HSP 1 Score: 90.9 bits (224), Expect = 8.570e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 65
            LR+VFG+ +FREGQL AI+ V+AG ST+LV  TGAGKSL YQLPA++LPGLT+VVSPL+SLM DQ
Sbjct:  171 LRKVFGYDSFREGQLEAIQNVVAGESTVLVLPTGAGKSLCYQLPAMILPGLTLVVSPLLSLMVDQ 235          
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Match: A0A3B6C8X3_WHEAT (DNA helicase n=17 Tax=Triticeae TaxID=147389 RepID=A0A3B6C8X3_WHEAT)

HSP 1 Score: 90.9 bits (224), Expect = 8.590e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQ 65
            LR+VFG+ +FREGQL AI+ V+AG ST+LV  TGAGKSL YQLPA++LPGLT+VVSPL+SLM DQ
Sbjct:  281 LRKVFGYDSFREGQLEAIQNVVAGESTVLVLPTGAGKSLCYQLPAMILPGLTLVVSPLLSLMVDQ 345          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135934 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBS9_9STRA3.410e-36100.00Helicase ATP-binding domain-containing protein (Fr... [more]
D7G8A0_ECTSI1.250e-2276.92DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JFV2_9PHAE3.180e-2275.38DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A662XQ39_9STRA3.390e-2072.31DNA helicase n=1 Tax=Nothophytophthora sp. Chile5 ... [more]
A0A453C9C7_AEGTS5.660e-2072.31DNA helicase n=1 Tax=Aegilops tauschii subsp. stra... [more]
A0A453C9M6_AEGTS7.960e-2072.31DNA helicase n=2 Tax=Aegilops tauschii subsp. stra... [more]
A0A453C9B3_AEGTS8.030e-2072.31DNA helicase n=1 Tax=Aegilops tauschii subsp. stra... [more]
A0A453C9N1_AEGTS8.490e-2072.31DNA helicase n=1 Tax=Aegilops tauschii subsp. stra... [more]
M7Z5U2_TRIUA8.570e-2072.31DNA helicase n=6 Tax=Triticinae TaxID=1648030 RepI... [more]
A0A3B6C8X3_WHEAT8.590e-2072.31DNA helicase n=17 Tax=Triticeae TaxID=147389 RepID... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 1..66
e-value: 1.3E-27
score: 98.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..65
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 14..65
e-value: 8.3E-7
score: 28.9
NoneNo IPR availablePANTHERPTHR13710DNA HELICASE RECQ FAMILY MEMBERcoord: 1..66
NoneNo IPR availablePANTHERPTHR13710:SF108ATP-DEPENDENT DNA HELICASE Q4coord: 1..66
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 18..66
score: 10.207289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_148contigContig_148:338448..338645 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135934mRNA_14567Tribonema minus UTEX_B_3156 mRNAContig_148 338448..338645 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|135934|gw1.148.43.1 ID=Trimin1|135934|gw1.148.43.1|Name=jgi.p|Trimin1|135934|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=66bp
LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPG
LTVVVSPLVSLMEDQV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR011545DEAD/DEAH_box_helicase_dom
IPR014001Helicase_ATP-bd