mRNA_14547 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135517
Unique NamemRNA_14547
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|135517 vs. uniprot
Match: A0A835ZHW5_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHW5_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.960e-23
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 
Query:    1 RGSGSKRAIDLLQLMIDSGGVPDARHFTAAMKVCAKEPDSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDPAKAEAVFAEMCQSTNGIKPDARS 504
            RGSGSKRAIDLLQLMIDSGGVPDARHFTAAMKVCAKEPDSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDPAKAEAVFAEMCQSTNGIKPDARS
Sbjct:    1 RGSGSKRAIDLLQLMIDSGGVPDARHFTAAMKVCAKEPDSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDPAKAEAVFAEMCQSTNGIKPDARS 168
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BLAST of jgi.p|Trimin1|135517 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.630e-5
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   10 GSKRAIDLLQLMIDSGGVPDARHFTAAMKVCAKEPDSAE 126
            GS++A++LLQ M D G VPD RH+TAAMKVC  E DSA+
Sbjct:   70 GSEQALELLQRMQDKGPVPDIRHYTAAMKVCVTEGDSAK 108
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135517 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZHW5_9STRA3.960e-23100.00PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835Z5Z3_9STRA3.630e-564.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_148contigContig_148:211154..212499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135517|gw1.148.39.1
Hectar predicted targeting categoryother localisation
TranscriptId135839
TrackFilteredModels1
ProteinId135517
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135517gene_14547Tribonema minus UTEX_B_3156 geneContig_148 211154..212499 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14547_1exon_14547_1Tribonema minus UTEX_B_3156 exonContig_148 211154..211312 +
exon_14547_2exon_14547_2Tribonema minus UTEX_B_3156 exonContig_148 212155..212499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14547CDS_14547Tribonema minus UTEX_B_3156 CDSContig_148 211154..211312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135517Trimin1|135517|gw1.148.39.1Tribonema minus UTEX_B_3156 polypeptideContig_148 211154..212499 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14547 ID=mRNA_14547|Name=jgi.p|Trimin1|135517|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_148:211154..212499+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGTGGCAGCGGCAGCAAGCGGGCCATAGACCTGTTGCAGCTCATGATCGA
CTCTGGCGGTGTGCCTGATGCTAGGCATTTCACTGCTGCAATGAAGGTGT
GTGCAAAGGAACCCGATTCGGCCGAAGCCCTCAACATCATCCAGCAAATG
CAGGACATGGGAGTGACTGCAGACATCAGAAGCTGGACCGTGCTGCTCCA
TGCCTTTGGTGGGGCTGGGCAGGTGGACCAGATGATGGCGAAGTACAGGG
AGCTGCGCAGCACGGGACTGCAGCCTGACATTGTCATCATGACCACTATG
CTAGCTCATGCTGCTGCCGCGGGTCGGTGCAGCACTGCCGAGGACATTTG
GAGGGAGCTGCATGACCTCCAGCTGGCCCCCAGTGTCCGCACCTACACCG
CACTGCTTGACTGCTATGCAAAGGCAAAAGACCCGGCGAAGGCGGAGGCA
GTGTTTGCCGAAATGTGTCAGTCTACCAATGGCATCAAACCAGATGCTCG
CAGC
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protein sequence of jgi.p|Trimin1|135517

>Trimin1|135517|gw1.148.39.1 ID=Trimin1|135517|gw1.148.39.1|Name=jgi.p|Trimin1|135517|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp
RGSGSKRAIDLLQLMIDSGGVPDARHFTAAMKVCAKEPDSAEALNIIQQM
QDMGVTADIRSWTVLLHAFGGAGQVDQMMAKYRELRSTGLQPDIVIMTTM
LAHAAAAGRCSTAEDIWRELHDLQLAPSVRTYTALLDCYAKAKDPAKAEA
VFAEMCQSTNGIKPDARS
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mRNA from alignment at Contig_148:211154..212499+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14547 ID=mRNA_14547|Name=jgi.p|Trimin1|135517|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1346bp|location=Sequence derived from alignment at Contig_148:211154..212499+ (Tribonema minus UTEX_B_3156 )
CGTGGCAGCGGCAGCAAGCGGGCCATAGACCTGTTGCAGCTCATGATCGA
CTCTGGCGGTGTGCCTGATGCTAGGCATTTCACTGCTGCAATGAAGGTGT
GTGCAAAGGAACCCGATTCGGCCGAAGCCCTCAACATCATCCAGCAAATG
CAGGACATGGTGCATCTGATGGATGTACGAACGCGAGGTGACGGCGGCAG
CAAGCGGGCCATAGATTGTTGCAGCTCATGATCGACGCTGGCGGTGTGCC
TGATGCTAGGCACTTCACTGCTGCAATGAAGGTGTATGCCAACGAGCACG
ATTCGGCCGAAGCCTTCAACATCTTCCAGCAAATGCAGGACATGGTGAGC
ATGAATCTGATGTTGTTGTGTTTATTTATACGGCATGCATGCAGTGAACA
AGCATGACAAGTCAGATGCTGTTGTTTCTGGAAGCATGCAGTGCACAAGG
ACCAGAGGGCATTCTGAGTTGGGATATCGCTCCGGCCCTCGAGCCACCAT
GCATGTGCACGCAGATCAAACATGTCAGGCACATGAGCAGATGCCTGGTG
TTTTCTCGACGACTTACTTCTGATAGGCTTATCACGTGAAGTTGAACTTC
CACAAAAACAATGTGCCATCAGAAGCGCACGTTTCCTGCATTGAGCGCAT
GACTCAAGAAGGAGGACGACCATGGAAGTAAGTCGCAGTTGGCTTCTCAT
GCTCAGAATGTAAGCATCAAAGGCATTTGCAACCTTGTTACGGCACGAAT
ACACTTGATTGAGGACTCCAAGTGGTGTCATGCAATTGAACGCGGCGCAC
AACAAGAGGAAGTGCACTTCGAGCTGGCTGGTGTGCTACAGATGCACCTG
AGCACATTTTGGTGCTTCCTGTGCTGCAACTCGTTTGACCCGTGCTTTTC
TGTTGATTGCCATGCTATAGCGGTATGTAGCCTCTCAAAGAGCACATGCA
CGGCCTAAATCAATCTCGCTAATGTCGTTGCTGCCGCATTGTGTGCTGCA
GGGAGTGACTGCAGACATCAGAAGCTGGACCGTGCTGCTCCATGCCTTTG
GTGGGGCTGGGCAGGTGGACCAGATGATGGCGAAGTACAGGGAGCTGCGC
AGCACGGGACTGCAGCCTGACATTGTCATCATGACCACTATGCTAGCTCA
TGCTGCTGCCGCGGGTCGGTGCAGCACTGCCGAGGACATTTGGAGGGAGC
TGCATGACCTCCAGCTGGCCCCCAGTGTCCGCACCTACACCGCACTGCTT
GACTGCTATGCAAAGGCAAAAGACCCGGCGAAGGCGGAGGCAGTGTTTGC
CGAAATGTGTCAGTCTACCAATGGCATCAAACCAGATGCTCGCAGC
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Coding sequence (CDS) from alignment at Contig_148:211154..212499+

>mRNA_14547 ID=mRNA_14547|Name=jgi.p|Trimin1|135517|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_148:211154..212499+ (Tribonema minus UTEX_B_3156 )
CGTGGCAGCGGCAGCAAGCGGGCCATAGACCTGTTGCAGCTCATGATCGA
CTCTGGCGGTGTGCCTGATGCTAGGCATTTCACTGCTGCAATGAAGGTGT
GTGCAAAGGAACCCGATTCGGCCGAAGCCCTCAACATCATCCAGCAAATG
CAGGACATGGGAGTGACTGCAGACATCAGAAGCTGGACCGTGCTGCTCCA
TGCCTTTGGTGGGGCTGGGCAGGTGGACCAGATGATGGCGAAGTACAGGG
AGCTGCGCAGCACGGGACTGCAGCCTGACATTGTCATCATGACCACTATG
CTAGCTCATGCTGCTGCCGCGGGTCGGTGCAGCACTGCCGAGGACATTTG
GAGGGAGCTGCATGACCTCCAGCTGGCCCCCAGTGTCCGCACCTACACCG
CACTGCTTGACTGCTATGCAAAGGCAAAAGACCCGGCGAAGGCGGAGGCA
GTGTTTGCCGAAATGTGTCAGTCTACCAATGGCATCAAACCAGATGCTCG
CAGC
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