Trimin1|135517|gw1.148.39.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|135517
Unique Name	Trimin1\|135517\|gw1.148.39.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	168

Homology

[Close]

BLAST of jgi.p|Trimin1|135517 vs. uniprot
Match: A0A835ZHW5_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHW5_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.960e-23
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0

Query:    1 RGSGSKRAIDLLQLMIDSGGVPDARHFTAAMKVCAKEPDSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDPAKAEAVFAEMCQSTNGIKPDARS 168
            RGSGSKRAIDLLQLMIDSGGVPDARHFTAAMKVCAKEPDSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDPAKAEAVFAEMCQSTNGIKPDARS
Sbjct:    1 RGSGSKRAIDLLQLMIDSGGVPDARHFTAAMKVCAKEPDSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDPAKAEAVFAEMCQSTNGIKPDARS 168

[Close]

BLAST of jgi.p|Trimin1|135517 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.630e-5
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 0

Query:    4 GSKRAIDLLQLMIDSGGVPDARHFTAAMKVCAKEPDSAE 42
            GS++A++LLQ M D G VPD RH+TAAMKVC  E DSA+
Sbjct:   70 GSEQALELLQRMQDKGPVPDIRHYTAAMKVCVTEGDSAK 108

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|135517 vs. uniprot

BLAST of jgi.p|Trimin1|135517 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZHW5_9STRA	3.960e-23	100.00	PPR_long domain-containing protein (Fragment) n=1 ...	[more]
A0A835Z5Z3_9STRA	3.630e-5	64.10	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..120 e-value: 3.0E-24 score: 88.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 121..168 e-value: 3.4E-7 score: 31.9
IPR033443	Pentacotripeptide-repeat region of PRORP	PFAM	PF17177	PPR_long	coord: 75..157 e-value: 3.6E-9 score: 36.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 131..166 e-value: 1.5E-8 score: 32.3 coord: 61..94 e-value: 6.1E-5 score: 20.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 128..158 score: 9.514466
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 58..92 score: 10.281757
None	No IPR available	PANTHER	PTHR47941	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL	coord: 6..167

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_148	contig	Contig_148:211154..212499 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|135517	mRNA_14547	Tribonema minus UTEX_B_3156	mRNA	Contig_148 211154..212499 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|135517|gw1.148.39.1 ID=Trimin1|135517|gw1.148.39.1|Name=jgi.p|Trimin1|135517|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp
RGSGSKRAIDLLQLMIDSGGVPDARHFTAAMKVCAKEPDSAEALNIIQQM
QDMGVTADIRSWTVLLHAFGGAGQVDQMMAKYRELRSTGLQPDIVIMTTM
LAHAAAAGRCSTAEDIWRELHDLQLAPSVRTYTALLDCYAKAKDPAKAEA
VFAEMCQSTNGIKPDARS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR033443	PPR_long
IPR002885	Pentatricopeptide_repeat