mRNA_14451 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A836CNT2_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNT2_9STRA) HSP 1 Score: 306 bits (785), Expect = 8.650e-105 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 3
Query: 3 MVFARLMLLVGSALSVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAPAKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
MVFARLMLLVGSALSVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAPAKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP
Sbjct: 1 MVFARLMLLVGSALSVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAPAKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 155
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A7S2UXM9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXM9_9STRA) HSP 1 Score: 140 bits (353), Expect = 3.750e-39 Identity = 78/139 (56.12%), Postives = 92/139 (66.19%), Query Frame = 3
Query: 60 AEAFL-VAPALQRPVQRDTLTPRMLFG--KKAAPAKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
A AFL + AL R + + +MLFG KKAAP K K +TV+Q+ F D + E NLRK LM I+IYPLQGK+ NCGGGG CGTC V V+ G NN SPK P EKK+L KPE YRLSCCT+V+G TV TKP
Sbjct: 16 ASAFLGQSLALNRVQASSSTSLQMLFGSKKKAAPVKGK-YSITVKQRGFTDFDLETEGTANLRKTLMAQKIDIYPLQGKLTNCGGGGVCGTCAVEVMDGANNLSPKAPNEKKVLSKKPENYRLSCCTRVSGACTVRTKP 153
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: D8LBE9_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBE9_ECTSI) HSP 1 Score: 139 bits (350), Expect = 1.270e-38 Identity = 79/140 (56.43%), Postives = 93/140 (66.43%), Query Frame = 3
Query: 63 EAFLVAPALQRPVQRDTLTP-RMLFGKKAAPAKSKG-IEVTVQQKY-FKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLL--GNKPETYRLSCCTKVNGNITVATKP 467
F+VAP+ V+R + + +MLFG I V VQQK FK+T + + NLRKALM I+IYPLQGKIYNCGGGGSCGTC VNV AG NCSPKGP EKKLL +P +YRLSCCT V+G +TV TKP
Sbjct: 20 NGFVVAPSSSLNVRRQSHSGMQMLFGXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLDKNKRPASYRLSCCTMVSGPVTVQTKP 159
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: W7TM71_9STRA (Ferredoxin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM71_9STRA) HSP 1 Score: 129 bits (324), Expect = 1.030e-34 Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 3
Query: 129 LFGKKAAPAKSKGIEVTVQQKYFKDTVVAMEQ--PGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKP-ETYRLSCCTKVNGNITVATKP 467
+FGKK+A K VTVQQK++K+ + +E P NLRK LM I+IYPLQGKIYNCGGGG CGTC + ++ G N +PK P E K LG K + RL+CCT+ +G++TV TKP
Sbjct: 43 MFGKKSAGGNKKTFTVTVQQKFYKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: M1VFK1_CYAM1 (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VFK1_CYAM1) HSP 1 Score: 98.6 bits (244), Expect = 2.390e-22 Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = 3
Query: 168 IEVTVQQKYFKDTVVAMEQP--GNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNK--PETYRLSCCTKVNGNITVATKP 467
++VTV +K + V +E P NLRK L+ I++Y L+GK+ NCGGGG CGTC V++ G N +P+G E ++ NK P+++RLSCCTK+ G ITV TKP
Sbjct: 88 VQVTVYEKGKSEPRV-LEAPVGSNLRKVLLENKIDVYTLRGKLTNCGGGGQCGTCIVDITEGQYNTNPRGWREARIFENKQAPDSWRLSCCTKIEGPITVRTKP 190
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A1X6NLG4_PORUM (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLG4_PORUM) HSP 1 Score: 97.8 bits (242), Expect = 3.350e-22 Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 3
Query: 168 IEVTVQQKY----FKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
+ VTV +K FK T V + ++R AL AGI++Y L+GK+ NCGGG SCGTC V+VV GG C+ E + L +PE++RL+C KV G++T+ TKP
Sbjct: 72 VTVTVMEKNGKDSFKTTEVEVSTDQDMRSALQAAGIDVYTLRGKLTNCGGGASCGTCKVDVVEGGGLCNGVSGREDRKLDGQPESWRLACQLKVLGDVTIRTKP 175
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: K9RX56_SYNP3 (Ferredoxin n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=K9RX56_SYNP3) HSP 1 Score: 92.8 bits (229), Expect = 4.520e-21 Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 3
Query: 231 NLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
NLR + AGI++Y L+GK+ NC G G CGTC V +V G N S + P E + L KPE++RL+C TKVNG +TV TKP
Sbjct: 29 NLRLRALEAGIDLYTLKGKLMNCNGYGQCGTCIVEIVEGMENLSERTPVENRKLKKKPESFRLACQTKVNGPVTVKTKP 107
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: Q8DIQ2_THEVB (Tll1529 protein n=8 Tax=Cyanobacteria TaxID=1117 RepID=Q8DIQ2_THEVB) HSP 1 Score: 92.8 bits (229), Expect = 4.640e-21 Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 3
Query: 231 NLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
NLR M AG+++Y L+GK++NCGG G CGTC V +V G + SP+ P E++ L KPE YRL+C T V G ++V TKP
Sbjct: 28 NLRLKAMEAGVDLYTLKGKLFNCGGYGQCGTCIVEIVEGMEHLSPRTPVEERKLRRKPENYRLACQTLVYGPVSVKTKP 106
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A218QTJ0_9CYAN (Ferredoxin n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A218QTJ0_9CYAN) HSP 1 Score: 92.4 bits (228), Expect = 4.960e-21 Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 3
Query: 231 NLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
NLR M I+IY GK+ NCGGGG+CGTC V +V G N SP+ AE ++L KPE YRL+C T VNG ++V TKP
Sbjct: 20 NLRLKAMQNNIDIYKFIGKMTNCGGGGNCGTCIVEIVEGIENLSPRTDAENRILKKKPENYRLACQTVVNGAVSVVTKP 98
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A2D2Q562_THELV (Iron ABC transporter substrate-binding protein n=2 Tax=Thermostichus lividus TaxID=33070 RepID=A0A2D2Q562_THELV) HSP 1 Score: 92.0 bits (227), Expect = 7.200e-21 Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 3
Query: 210 VAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
+ Q NLR M AG+++Y L+GK++NCGG G CGTC V ++ G + SP+ E++ L KP+ YRL+C T VNG ++V TKP
Sbjct: 14 IVAAQGANLRLKAMEAGVDLYTLKGKLFNCGGYGQCGTCIVEILEGMEHLSPRTAVEERKLRRKPDNYRLACQTLVNGPVSVKTKP 99 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14451 ID=mRNA_14451|Name=jgi.p|Trimin1|352810|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=595bp|location=Sequence derived from alignment at Contig_132:284994..285709+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TCATGGTGTTCGCCAGGCTGATGCTGCTCGTGGGGAGCGCTCTCAGTGTGback to top protein sequence of jgi.p|Trimin1|352810 >Trimin1|352810|estExt_Genemark1.C_Ctg_1320034 ID=Trimin1|352810|estExt_Genemark1.C_Ctg_1320034|Name=jgi.p|Trimin1|352810|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp MVFARLMLLVGSALSVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAPback to top mRNA from alignment at Contig_132:284994..285709+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14451 ID=mRNA_14451|Name=jgi.p|Trimin1|352810|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=716bp|location=Sequence derived from alignment at Contig_132:284994..285709+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_132:284994..285709+ >mRNA_14451 ID=mRNA_14451|Name=jgi.p|Trimin1|352810|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=468bp|location=Sequence derived from alignment at Contig_132:284994..285709+ (Tribonema minus UTEX_B_3156 )back to top |