mRNA_14412 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176004
Unique NamemRNA_14412
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A835ZJG7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJG7_9STRA)

HSP 1 Score: 558 bits (1438), Expect = 1.090e-201
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1
Query:    1 MNTLTLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCKDEGKCGLLKDDPIYTAVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEWFTRASEHQRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNNVDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKKW 771
            MNTLTLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCKDEGKCGLLKDDPIYTAVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEWFTRASEHQRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNNVDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKKW
Sbjct:    1 MNTLTLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCKDEGKCGLLKDDPIYTAVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEWFTRASEHQRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNNVDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKKW 257          
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: UPI000F0A6B83 (zinc-ribbon domain-containing protein n=2 Tax=Actinoplanes teichomyceticus TaxID=1867 RepID=UPI000F0A6B83)

HSP 1 Score: 99.8 bits (247), Expect = 4.030e-20
Identity = 85/287 (29.62%), Postives = 127/287 (44.25%), Query Frame = 1
Query:   10 LTLGSTRKLHFKCPSG--HVYGAVVSNRVS-GSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRC----------------KDEGKCGLLKDDPI-----------YTAVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEWFTRASEH--QRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNN--VDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKK 768
            L+ GS RK+ ++C     H + A+VS+R   G+GC  CAG+ +       V+ SL      +A     +   R+  LT D         ++ AGSN KL+WRC                +    C     + +             A + +  +  G+T    D +  GS +KL W+C+     P+H+W   A+    Q  GCP C+   +   +SL A FP +AA+L   +N  +    I +GS +   W C  G D     H W  +  NRTSGG GCP CAG+K
Sbjct:   36 LSFGSNRKVWWQCAVAPDHEWEAIVSSRARMGNGCPSCAGYQVS------VTNSLATRFPQVAAE---LDPDRNDGLTAD---------QIVAGSNRKLWWRCTAGPDHTWLTTVSSRTRGGTGCPACSGNQVSVTNSLAARFPQVAAELDSDRNDGLTA---DQIVAGSNRKLWWRCTAG---PDHQWQATANRRTSQGTGCPACAGYQLSVTNSLAARFPQIAAELDMDSNDGLTGDQIVAGSTRKVWWQCIKGDD-----HRWQTTIDNRTSGGHGCPCCAGRK 293          
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A2H3MIX3_9BACI (Uncharacterized protein n=2 Tax=Bacillus pseudomycoides TaxID=64104 RepID=A0A2H3MIX3_9BACI)

HSP 1 Score: 94.7 bits (234), Expect = 2.130e-18
Identity = 81/279 (29.03%), Postives = 122/279 (43.73%), Query Frame = 1
Query:   13 TLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALLVSTSLYKEI--DWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCKDEGK-----CGLLKDD--PIYTA--VDFERCKAK---GITREF----------IDTLTLGSAQKLVWKCSTTCLCPEHEWFTRA-SEHQRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNN--VDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKK 768
            TLGS++K+ +KC  GH + A  +NR  G GC  C+   +     L    +L  EI  +W        H  ++G LT          + +T GS+ K +W+C+   +     C   + +  P  T+  V  + C A     + +E+           D +   S +K  WKC        HEW     + H+  GCPYCS + VC  + L  L P +A + HP  N  + P  + +GS     W+C  G       H W     NRT G +GCP+C G+K
Sbjct:    7 TLGSSKKVWWKCEKGHEWEASPANRHQGKGCPYCSNQKVCIDNCL---ATLNPEIAKEW--------HPTKNGKLT---------PFDITFGSSKKAWWKCEKRHEWETKVCNRTQGNGCPYCTSRKVCIDNCLATLNPELAKEWHLIKNGELTPYDVMR-SSNKKAWWKCEKG-----HEWEASPWNRHKGRGCPYCSNKKVCIDNCLATLNPEIAKEWHPTKNGKLTPYDVVAGSYTKVWWMCNEG-------HEWETQVRNRTQG-NGCPYCCGQK 251          
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A518GYM4_9BACT (Helicase ATP-binding domain-containing protein n=2 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518GYM4_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 1.510e-17
Identity = 50/122 (40.98%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  415 LTLGSAQKLVWKCSTTCLCPEHEWFTRASEHQRYG--CPYCSKRYVCPCSSLQALFPHVAAQLHPCNNVD--PRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKK 768
            LT GS +K+ W+C      P HEW  + +     G  CP+C+ R V   +SL  L+P VAAQ HP  N D  P  I +GS  +  W C  G D     HVW      RT+GG GCP+CAG++
Sbjct:   74 LTAGSNRKVWWRCLRD---PAHEWEAQVNNRTHGGQQCPHCANRRVSEANSLATLYPEVAAQWHPTANGDLRPEAIIAGSNTVVTWACPAGPD-----HVWRTRVVERTTGGKGCPFCAGRR 187          
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: UPI001F3E99CB (zinc-ribbon domain-containing protein n=1 Tax=Oscillibacter valericigenes TaxID=351091 RepID=UPI001F3E99CB)

HSP 1 Score: 89.0 bits (219), Expect = 6.830e-17
Identity = 79/283 (27.92%), Postives = 119/283 (42.05%), Query Frame = 1
Query:   10 LTLGSTRKLHFKCPSGHVYGAVVSNRV-SGSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCKDEGK--CGLLKDDPIYTAVDFERCKAKGITREFIDTLTL-----------------------GSAQKLVWKCSTTCLCPEHEWFTR-ASEHQRYGCPYCSKRYVCPCSS-LQALFPHVAAQLHPCNNVD--PRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKK 768
            +T GS RK  + C  GH +   ++NR+ +G GC  CAG  +      L S        W        H  ++G LT ++         +T GS  K++W C D+G     ++K      +  +  C  + + + + D  T                        G+ +K+ W+C        HEW  + AS     GCP C+ + + P  + L+  FP +AAQ H   N +  P T +    Q   W C  G       H + A  G+RTS GSGCP+CAGKK
Sbjct:    2 VTTGSNRKTWWVCDKGHEWQQKINNRIYNGYGCPYCAGKKVWPGFNDLASQMPEIAAQW--------HPTKNGTLTPEM---------VTTGSKRKIWWVC-DKGHEWQAIVKSRAEGCSCPY--CANRAVIKGYNDLATTHPQLAQQWHPTKNGRLTPEDVVAGTLRKVWWQCEKG-----HEWRAQIASRANGVGCPVCAGKIIIPGENDLKTFFPEIAAQWHTTKNGNFTPETTSPYCNQEVWWQCERG-------HEYLARVGSRTSHGSGCPYCAGKK 252          
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A1C6GVP4_9FIRM (Uncharacterized protein n=5 Tax=Eubacteriales TaxID=186802 RepID=A0A1C6GVP4_9FIRM)

HSP 1 Score: 85.9 bits (211), Expect = 1.080e-15
Identity = 83/276 (30.07%), Postives = 123/276 (44.57%), Query Frame = 1
Query:    4 NTLTLGSTRKLHFKCPSGHVYGAVVSNRVS-GSGCNICAGHGIRGTAALLVSTSLYKEIDWIAC----VRNGIHTPRSGVLTFDLDLI----------KGIVYKLTAGSNVKLYW-RCKDEGKCGLLKDDPIYTAVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEWFTRASEHQ--RYGCPYCSKRYVCPCSS-LQALFPHVAAQLHPCNN--VDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKK 768
            +T++ GS+R++ ++C  GH + + V  RVS G+GC  C+     G  A+   T L      +A      +N   TP   VL     L+          + +V   TAGS   +   R    G+  L    P   A  +   +   +  + +   T GS +++ WKC     C  HEW  R         GCPYC+ + V P  + L +L+P VAAQ HP  N  + P  ++  S +   W C  G       H + A    RT GGSGCP+CAG+K
Sbjct:   28 DTVSGGSSRRVWWRCGKGHEWQSAVYARVSAGAGCPYCS-----GKLAVPGQTDLASRFPEVAFQWHPTKNAPLTPDQ-VLPGSHRLVWWLCKKGHEWQAVVKSRTAGSGCPVCSNRVTAPGENDLAVTHP-ELAAQWHPTRNGSLKPQEV---TAGSRRRVWWKC-----CRGHEWQARVLSRSFGGTGCPYCAGKRVIPGENDLASLYPEVAAQWHPMRNGALAPTQVSPYSNRKVWWRCEKG-------HDYQAVVAARTMGGSGCPYCAGRK 281          
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A417NDP0_9FIRM (Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium TF06-43 TaxID=2292270 RepID=A0A417NDP0_9FIRM)

HSP 1 Score: 82.8 bits (203), Expect = 1.280e-14
Identity = 74/286 (25.87%), Postives = 116/286 (40.56%), Query Frame = 1
Query:   10 LTLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNV-KLYWRCKD---------------------------EGKCGLLKDDPIYTAVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEWFTRASEHQRYG--CPYCSKRYVCP-CSSLQALFPHVAAQLHPCNN--VDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGG-SGCPWCAGK 765
            LT+GS +K+ ++CP+GH Y +VV +RV G+GC++CAG  +      L +       +W                  D +    ++  L A   V K +WRC                             +G+       P   A  ++R K   +  E +   T GS +++ W+C        H +    +   R G  CPYCS   + P  + L  + P VA+Q HP  N  + P+ +  GS +   W+C       D  H W +   +RT     GCP CAG+
Sbjct:  103 LTIGSHKKVWWRCPAGHSYDSVVKSRVLGTGCSVCAGRVVLPDENSLAARYPALVAEW------------------DTEKNAPLLPTLVAPGTVRKAWWRCPKGHSYRAAISSRAGGGTGCPFCAGQKVIQGENDFASQYP-QLAAQWDRQKNGALIPEAV---TSGSNRRVWWRCEKG-----HSYPAVIAHRVRSGSDCPYCSNHKILPGFNDLATIDPVVASQWHPTRNGSLTPQQVTPGSRRKVWWLC-------DKGHAWRSVISSRTGKKWCGCPICAGR 354          
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: UPI00194DD583 (zinc-ribbon domain-containing protein n=1 Tax=Micromonospora andamanensis TaxID=1287068 RepID=UPI00194DD583)

HSP 1 Score: 78.2 bits (191), Expect = 9.810e-13
Identity = 83/294 (28.23%), Postives = 116/294 (39.46%), Query Frame = 1
Query:   10 LTLGSTRKLHFKCPSG--HVYGAVVSNRVS-GSGCNICAGHGIRGTAALLVSTSLYKEIDWIAC----VRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCKDEGK-----------------CGLLKDDPIYT-----------AVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEW---FTRASEHQRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNNVDPRT---IASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKK 768
            +  GS R  +++CP+G  HV+   V+ R +  +GC  C       +  L V+ SL      +A     +RNG  TP         D + G        S V+ +W C D G                  C       +             A  + R +   +T    D +  GS     W+C      P+HEW     + +  +  GCP C+   +   +SL   FP VA QL P  N D RT   + +GS     W C  G D     HVW A   +RTSGGSGCP CAG +
Sbjct:  414 IVAGSGRPANWRCPAGPDHVWTLPVAARTTLDAGCPACH------SRQLSVTNSLSTRFPDVAAHWHPIRNGDRTP---------DHVIG------TSSTVRAWWIC-DHGPDHEWETQVHQRTVVGTGCPCCAGSQLSVTNSLAARFPALAKQWHRSRNGDLTP---DRILAGSRSSAWWQCPKG---PDHEWAATLDKRTGREATGCPACAGIQLSVTNSLATRFPAVAVQLDPLLN-DGRTPDRVLAGSQDKLWWRCPAGPD-----HVWLAVVSSRTSGGSGCPCCAGMR 673          
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A520F323_RHOSO (Uncharacterized protein n=3 Tax=Rhodococcus TaxID=1827 RepID=A0A520F323_RHOSO)

HSP 1 Score: 74.7 bits (182), Expect = 1.320e-11
Identity = 73/278 (26.26%), Postives = 115/278 (41.37%), Query Frame = 1
Query:   10 LTLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCK--DEGKCGLLKDDPIYTAVDFERCKAKGITREFIDTLTL---------------------GSAQKLVWKCSTTCLCPEHEWFTRASE--HQRYGCPYCSKRYVCPC--SSLQALFPHVAAQLHPCNNVDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAG 762
            LT+GS R++ ++C +GH + A+V  RV GSGC ICAG  I      + +T      +W   VRN I                    KL+  S  +++WRC    E +  +L         D   C  + +     D  TL                     GSA++++W+C+       HEW    ++  ++  GCP C  + V P    ++   +  VA +    N+  P   A  S ++  W C  G       H + A   +RT+ GS CP+C+G
Sbjct:   42 LTVGSQRRVWWRCAAGHEWEAMVRARVRGSGCPICAGREIVPGINDVATTHPDIAAEWHP-VRNSIDPT-----------------KLSIRSARQVWWRCAAGHEWQTQVLHRGKGTKCPD---CWGRSLVPGANDLATLHPSIAAEFHPRNNTDPSRYLPGSAKQVLWQCTRG-----HEWTMAITDRVYRSRGCPECEGKPVLPPRRGAVTVAYSPVAGEWSDRNDRGPEEFALYSNKMAWWRCPAG-------HEYEAKIAHRTNSGSKCPYCSG 286          
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A836V7E8_9BACT (Uncharacterized protein n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A836V7E8_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 3.230e-11
Identity = 38/106 (35.85%), Postives = 53/106 (50.00%), Query Frame = 1
Query:  445 WKCSTTCLCPEHEWFTRASEHQRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNN--VDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWC 756
            W+C       +H W  R    +R  CP+CSK+     SSLQ LFP +AA++HP  N  ++   + +  P+   W C Y     +  H+W A   NRT   SGCP C
Sbjct:  216 WRCPVAS---DHSW--REPFKKRMRCPFCSKKKASSTSSLQILFPKLAAEIHPTRNKGINASELRAFGPEYIWWRCRY-----NPSHIWRAKVDNRTRNESGCPEC 311          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZJG7_9STRA1.090e-201100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI000F0A6B834.030e-2029.62zinc-ribbon domain-containing protein n=2 Tax=Acti... [more]
A0A2H3MIX3_9BACI2.130e-1829.03Uncharacterized protein n=2 Tax=Bacillus pseudomyc... [more]
A0A518GYM4_9BACT1.510e-1740.98Helicase ATP-binding domain-containing protein n=2... [more]
UPI001F3E99CB6.830e-1727.92zinc-ribbon domain-containing protein n=1 Tax=Osci... [more]
A0A1C6GVP4_9FIRM1.080e-1530.07Uncharacterized protein n=5 Tax=Eubacteriales TaxI... [more]
A0A417NDP0_9FIRM1.280e-1425.87Uncharacterized protein n=1 Tax=Ruminococcaceae ba... [more]
UPI00194DD5839.810e-1328.23zinc-ribbon domain-containing protein n=1 Tax=Micr... [more]
A0A520F323_RHOSO1.320e-1126.26Uncharacterized protein n=3 Tax=Rhodococcus TaxID=... [more]
A0A836V7E8_9BACT3.230e-1135.85Uncharacterized protein n=1 Tax=Candidatus Melaina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_132contigContig_132:1908..2681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176004|e_gw1.132.8.1
DescriptionProbable Zinc-ribbon domain
COG categoryK
Max annot lvl186801|Clostridia
EggNOG OGsCOG1996@1|root,COG1996@2|Bacteria,1UZSK@1239|Firmicutes,24A4V@186801|Clostridia,36QGM@31979|Clostridiaceae
Evalue1.48e-19
Seed ortholog1203606.HMPREF1526_02403
Hectar predicted targeting categoryother localisation
TranscriptId176326
TrackFilteredModels1
ProteinId176004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176004gene_14412Tribonema minus UTEX_B_3156 geneContig_132 1908..2681 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14412_1exon_14412_1Tribonema minus UTEX_B_3156 exonContig_132 1908..2681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14412CDS_14412Tribonema minus UTEX_B_3156 CDSContig_132 1908..2681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176004Trimin1|176004|e_gw1.132.8.1Tribonema minus UTEX_B_3156 polypeptideContig_132 1908..2681 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14412 ID=mRNA_14412|Name=jgi.p|Trimin1|176004|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_132:1908..2681- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACGTTGACTCTCGGCAGTACAAGGAAACTGCACTTCAAGTGCCC
CAGCGGACACGTTTACGGCGCAGTTGTCAGCAACCGCGTCAGCGGCAGCG
GCTGTAACATCTGCGCTGGCCACGGTATCCGCGGCACGGCGGCGCTGCTC
GTGTCAACATCGCTGTACAAGGAGATCGACTGGATTGCATGCGTACGCAA
TGGCATACACACACCAAGGAGTGGTGTCCTCACTTTCGACTTGGATCTCA
TCAAGGGCATCGTTTACAAACTCACTGCTGGTAGCAATGTCAAACTGTAT
TGGAGGTGCAAGGATGAAGGGAAGTGTGGTCTACTGAAAGATGATCCGAT
ATATACAGCCGTCGACTTCGAGCGGTGCAAGGCCAAGGGGATTACTCGAG
AGTTCATCGATACACTCACTCTGGGGTCTGCTCAGAAACTTGTGTGGAAG
TGCAGCACGACATGCTTATGCCCTGAGCATGAGTGGTTCACAAGAGCGAG
CGAGCACCAGCGGTATGGGTGTCCCTACTGCTCAAAGCGCTATGTGTGCC
CTTGCTCGTCACTACAAGCACTGTTCCCACACGTTGCCGCACAGTTACAC
CCATGCAACAATGTCGACCCCCGAACGATCGCCTCGGGCTCACCGCAGCT
ATACAAGTGGATCTGTACGTATGGGTGTGACGAGTGCGACAGCCCGCATG
TGTGGACGGCAAGCGCAGGGAACCGCACAAGTGGCGGCTCCGGATGTCCG
TGGTGTGCAGGTAAGAAGTGGTAA
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protein sequence of jgi.p|Trimin1|176004

>Trimin1|176004|e_gw1.132.8.1 ID=Trimin1|176004|e_gw1.132.8.1|Name=jgi.p|Trimin1|176004|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=258bp
MNTLTLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALL
VSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLY
WRCKDEGKCGLLKDDPIYTAVDFERCKAKGITREFIDTLTLGSAQKLVWK
CSTTCLCPEHEWFTRASEHQRYGCPYCSKRYVCPCSSLQALFPHVAAQLH
PCNNVDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCP
WCAGKKW*
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mRNA from alignment at Contig_132:1908..2681-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14412 ID=mRNA_14412|Name=jgi.p|Trimin1|176004|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_132:1908..2681- (Tribonema minus UTEX_B_3156 )
ATGAACACGTTGACTCTCGGCAGTACAAGGAAACTGCACTTCAAGTGCCC CAGCGGACACGTTTACGGCGCAGTTGTCAGCAACCGCGTCAGCGGCAGCG GCTGTAACATCTGCGCTGGCCACGGTATCCGCGGCACGGCGGCGCTGCTC GTGTCAACATCGCTGTACAAGGAGATCGACTGGATTGCATGCGTACGCAA TGGCATACACACACCAAGGAGTGGTGTCCTCACTTTCGACTTGGATCTCA TCAAGGGCATCGTTTACAAACTCACTGCTGGTAGCAATGTCAAACTGTAT TGGAGGTGCAAGGATGAAGGGAAGTGTGGTCTACTGAAAGATGATCCGAT ATATACAGCCGTCGACTTCGAGCGGTGCAAGGCCAAGGGGATTACTCGAG AGTTCATCGATACACTCACTCTGGGGTCTGCTCAGAAACTTGTGTGGAAG TGCAGCACGACATGCTTATGCCCTGAGCATGAGTGGTTCACAAGAGCGAG CGAGCACCAGCGGTATGGGTGTCCCTACTGCTCAAAGCGCTATGTGTGCC CTTGCTCGTCACTACAAGCACTGTTCCCACACGTTGCCGCACAGTTACAC CCATGCAACAATGTCGACCCCCGAACGATCGCCTCGGGCTCACCGCAGCT ATACAAGTGGATCTGTACGTATGGGTGTGACGAGTGCGACAGCCCGCATG TGTGGACGGCAAGCGCAGGGAACCGCACAAGTGGCGGCTCCGGATGTCCG TGGTGTGCAGGTAAGAAGTGGTAA
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Coding sequence (CDS) from alignment at Contig_132:1908..2681-

>mRNA_14412 ID=mRNA_14412|Name=jgi.p|Trimin1|176004|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=774bp|location=Sequence derived from alignment at Contig_132:1908..2681- (Tribonema minus UTEX_B_3156 )
ATGAACACGTTGACTCTCGGCAGTACAAGGAAACTGCACTTCAAGTGCCC
CAGCGGACACGTTTACGGCGCAGTTGTCAGCAACCGCGTCAGCGGCAGCG
GCTGTAACATCTGCGCTGGCCACGGTATCCGCGGCACGGCGGCGCTGCTC
GTGTCAACATCGCTGTACAAGGAGATCGACTGGATTGCATGCGTACGCAA
TGGCATACACACACCAAGGAGTGGTGTCCTCACTTTCGACTTGGATCTCA
TCAAGGGCATCGTTTACAAACTCACTGCTGGTAGCAATGTCAAACTGTAT
TGGAGGTGCAAGGATGAAGGGAAGTGTGGTCTACTGAAAGATGATCCGAT
ATATACAGCCGTCGACTTCGAGCGGTGCAAGGCCAAGGGGATTACTCGAG
AGTTCATCGATACACTCACTCTGGGGTCTGCTCAGAAACTTGTGTGGAAG
TGCAGCACGACATGCTTATGCCCTGAGCATGAGTGGTTCACAAGAGCGAG
CGAGCACCAGCGGTATGGGTGTCCCTACTGCTCAAAGCGCTATGTGTGCC
CTTGCTCGTCACTACAAGCACTGTTCCCACACGTTGCCGCACAGTTACAC
CCATGCAACAATGTCGACCCCCGAACGATCGCCTCGGGCTCACCGCAGCT
ATACAAGTGGATCTGTACGTATGGGTGTGACGAGTGCGACAGCCCGCATG
TGTGGACGGCAAGCGCAGGGAACCGCACAAGTGGCGGCTCCGGATGTCCG
TGGTGTGCAGGTAAGAAGTGGTAA
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