mRNA_14412 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A835ZJG7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJG7_9STRA) HSP 1 Score: 558 bits (1438), Expect = 1.090e-201 Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1 Query: 1 MNTLTLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCKDEGKCGLLKDDPIYTAVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEWFTRASEHQRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNNVDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKKW 771 MNTLTLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCKDEGKCGLLKDDPIYTAVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEWFTRASEHQRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNNVDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKKW Sbjct: 1 MNTLTLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCKDEGKCGLLKDDPIYTAVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEWFTRASEHQRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNNVDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKKW 257
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: UPI000F0A6B83 (zinc-ribbon domain-containing protein n=2 Tax=Actinoplanes teichomyceticus TaxID=1867 RepID=UPI000F0A6B83) HSP 1 Score: 99.8 bits (247), Expect = 4.030e-20 Identity = 85/287 (29.62%), Postives = 127/287 (44.25%), Query Frame = 1 Query: 10 LTLGSTRKLHFKCPSG--HVYGAVVSNRVS-GSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRC----------------KDEGKCGLLKDDPI-----------YTAVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEWFTRASEH--QRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNN--VDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKK 768 L+ GS RK+ ++C H + A+VS+R G+GC CAG+ + V+ SL +A + R+ LT D ++ AGSN KL+WRC + C + + A + + + G+T D + GS +KL W+C+ P+H+W A+ Q GCP C+ + +SL A FP +AA+L +N + I +GS + W C G D H W + NRTSGG GCP CAG+K Sbjct: 36 LSFGSNRKVWWQCAVAPDHEWEAIVSSRARMGNGCPSCAGYQVS------VTNSLATRFPQVAAE---LDPDRNDGLTAD---------QIVAGSNRKLWWRCTAGPDHTWLTTVSSRTRGGTGCPACSGNQVSVTNSLAARFPQVAAELDSDRNDGLTA---DQIVAGSNRKLWWRCTAG---PDHQWQATANRRTSQGTGCPACAGYQLSVTNSLAARFPQIAAELDMDSNDGLTGDQIVAGSTRKVWWQCIKGDD-----HRWQTTIDNRTSGGHGCPCCAGRK 293
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A2H3MIX3_9BACI (Uncharacterized protein n=2 Tax=Bacillus pseudomycoides TaxID=64104 RepID=A0A2H3MIX3_9BACI) HSP 1 Score: 94.7 bits (234), Expect = 2.130e-18 Identity = 81/279 (29.03%), Postives = 122/279 (43.73%), Query Frame = 1 Query: 13 TLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALLVSTSLYKEI--DWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCKDEGK-----CGLLKDD--PIYTA--VDFERCKAK---GITREF----------IDTLTLGSAQKLVWKCSTTCLCPEHEWFTRA-SEHQRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNN--VDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKK 768 TLGS++K+ +KC GH + A +NR G GC C+ + L +L EI +W H ++G LT + +T GS+ K +W+C+ + C + + P T+ V + C A + +E+ D + S +K WKC HEW + H+ GCPYCS + VC + L L P +A + HP N + P + +GS W+C G H W NRT G +GCP+C G+K Sbjct: 7 TLGSSKKVWWKCEKGHEWEASPANRHQGKGCPYCSNQKVCIDNCL---ATLNPEIAKEW--------HPTKNGKLT---------PFDITFGSSKKAWWKCEKRHEWETKVCNRTQGNGCPYCTSRKVCIDNCLATLNPELAKEWHLIKNGELTPYDVMR-SSNKKAWWKCEKG-----HEWEASPWNRHKGRGCPYCSNKKVCIDNCLATLNPEIAKEWHPTKNGKLTPYDVVAGSYTKVWWMCNEG-------HEWETQVRNRTQG-NGCPYCCGQK 251
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A518GYM4_9BACT (Helicase ATP-binding domain-containing protein n=2 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518GYM4_9BACT) HSP 1 Score: 92.4 bits (228), Expect = 1.510e-17 Identity = 50/122 (40.98%), Postives = 65/122 (53.28%), Query Frame = 1 Query: 415 LTLGSAQKLVWKCSTTCLCPEHEWFTRASEHQRYG--CPYCSKRYVCPCSSLQALFPHVAAQLHPCNNVD--PRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKK 768 LT GS +K+ W+C P HEW + + G CP+C+ R V +SL L+P VAAQ HP N D P I +GS + W C G D HVW RT+GG GCP+CAG++ Sbjct: 74 LTAGSNRKVWWRCLRD---PAHEWEAQVNNRTHGGQQCPHCANRRVSEANSLATLYPEVAAQWHPTANGDLRPEAIIAGSNTVVTWACPAGPD-----HVWRTRVVERTTGGKGCPFCAGRR 187
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: UPI001F3E99CB (zinc-ribbon domain-containing protein n=1 Tax=Oscillibacter valericigenes TaxID=351091 RepID=UPI001F3E99CB) HSP 1 Score: 89.0 bits (219), Expect = 6.830e-17 Identity = 79/283 (27.92%), Postives = 119/283 (42.05%), Query Frame = 1 Query: 10 LTLGSTRKLHFKCPSGHVYGAVVSNRV-SGSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCKDEGK--CGLLKDDPIYTAVDFERCKAKGITREFIDTLTL-----------------------GSAQKLVWKCSTTCLCPEHEWFTR-ASEHQRYGCPYCSKRYVCPCSS-LQALFPHVAAQLHPCNNVD--PRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKK 768 +T GS RK + C GH + ++NR+ +G GC CAG + L S W H ++G LT ++ +T GS K++W C D+G ++K + + C + + + + D T G+ +K+ W+C HEW + AS GCP C+ + + P + L+ FP +AAQ H N + P T + Q W C G H + A G+RTS GSGCP+CAGKK Sbjct: 2 VTTGSNRKTWWVCDKGHEWQQKINNRIYNGYGCPYCAGKKVWPGFNDLASQMPEIAAQW--------HPTKNGTLTPEM---------VTTGSKRKIWWVC-DKGHEWQAIVKSRAEGCSCPY--CANRAVIKGYNDLATTHPQLAQQWHPTKNGRLTPEDVVAGTLRKVWWQCEKG-----HEWRAQIASRANGVGCPVCAGKIIIPGENDLKTFFPEIAAQWHTTKNGNFTPETTSPYCNQEVWWQCERG-------HEYLARVGSRTSHGSGCPYCAGKK 252
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A1C6GVP4_9FIRM (Uncharacterized protein n=5 Tax=Eubacteriales TaxID=186802 RepID=A0A1C6GVP4_9FIRM) HSP 1 Score: 85.9 bits (211), Expect = 1.080e-15 Identity = 83/276 (30.07%), Postives = 123/276 (44.57%), Query Frame = 1 Query: 4 NTLTLGSTRKLHFKCPSGHVYGAVVSNRVS-GSGCNICAGHGIRGTAALLVSTSLYKEIDWIAC----VRNGIHTPRSGVLTFDLDLI----------KGIVYKLTAGSNVKLYW-RCKDEGKCGLLKDDPIYTAVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEWFTRASEHQ--RYGCPYCSKRYVCPCSS-LQALFPHVAAQLHPCNN--VDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKK 768 +T++ GS+R++ ++C GH + + V RVS G+GC C+ G A+ T L +A +N TP VL L+ + +V TAGS + R G+ L P A + + + + + T GS +++ WKC C HEW R GCPYC+ + V P + L +L+P VAAQ HP N + P ++ S + W C G H + A RT GGSGCP+CAG+K Sbjct: 28 DTVSGGSSRRVWWRCGKGHEWQSAVYARVSAGAGCPYCS-----GKLAVPGQTDLASRFPEVAFQWHPTKNAPLTPDQ-VLPGSHRLVWWLCKKGHEWQAVVKSRTAGSGCPVCSNRVTAPGENDLAVTHP-ELAAQWHPTRNGSLKPQEV---TAGSRRRVWWKC-----CRGHEWQARVLSRSFGGTGCPYCAGKRVIPGENDLASLYPEVAAQWHPMRNGALAPTQVSPYSNRKVWWRCEKG-------HDYQAVVAARTMGGSGCPYCAGRK 281
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A417NDP0_9FIRM (Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium TF06-43 TaxID=2292270 RepID=A0A417NDP0_9FIRM) HSP 1 Score: 82.8 bits (203), Expect = 1.280e-14 Identity = 74/286 (25.87%), Postives = 116/286 (40.56%), Query Frame = 1 Query: 10 LTLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNV-KLYWRCKD---------------------------EGKCGLLKDDPIYTAVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEWFTRASEHQRYG--CPYCSKRYVCP-CSSLQALFPHVAAQLHPCNN--VDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGG-SGCPWCAGK 765 LT+GS +K+ ++CP+GH Y +VV +RV G+GC++CAG + L + +W D + ++ L A V K +WRC +G+ P A ++R K + E + T GS +++ W+C H + + R G CPYCS + P + L + P VA+Q HP N + P+ + GS + W+C D H W + +RT GCP CAG+ Sbjct: 103 LTIGSHKKVWWRCPAGHSYDSVVKSRVLGTGCSVCAGRVVLPDENSLAARYPALVAEW------------------DTEKNAPLLPTLVAPGTVRKAWWRCPKGHSYRAAISSRAGGGTGCPFCAGQKVIQGENDFASQYP-QLAAQWDRQKNGALIPEAV---TSGSNRRVWWRCEKG-----HSYPAVIAHRVRSGSDCPYCSNHKILPGFNDLATIDPVVASQWHPTRNGSLTPQQVTPGSRRKVWWLC-------DKGHAWRSVISSRTGKKWCGCPICAGR 354
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: UPI00194DD583 (zinc-ribbon domain-containing protein n=1 Tax=Micromonospora andamanensis TaxID=1287068 RepID=UPI00194DD583) HSP 1 Score: 78.2 bits (191), Expect = 9.810e-13 Identity = 83/294 (28.23%), Postives = 116/294 (39.46%), Query Frame = 1 Query: 10 LTLGSTRKLHFKCPSG--HVYGAVVSNRVS-GSGCNICAGHGIRGTAALLVSTSLYKEIDWIAC----VRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCKDEGK-----------------CGLLKDDPIYT-----------AVDFERCKAKGITREFIDTLTLGSAQKLVWKCSTTCLCPEHEW---FTRASEHQRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNNVDPRT---IASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAGKK 768 + GS R +++CP+G HV+ V+ R + +GC C + L V+ SL +A +RNG TP D + G S V+ +W C D G C + A + R + +T D + GS W+C P+HEW + + + GCP C+ + +SL FP VA QL P N D RT + +GS W C G D HVW A +RTSGGSGCP CAG + Sbjct: 414 IVAGSGRPANWRCPAGPDHVWTLPVAARTTLDAGCPACH------SRQLSVTNSLSTRFPDVAAHWHPIRNGDRTP---------DHVIG------TSSTVRAWWIC-DHGPDHEWETQVHQRTVVGTGCPCCAGSQLSVTNSLAARFPALAKQWHRSRNGDLTP---DRILAGSRSSAWWQCPKG---PDHEWAATLDKRTGREATGCPACAGIQLSVTNSLATRFPAVAVQLDPLLN-DGRTPDRVLAGSQDKLWWRCPAGPD-----HVWLAVVSSRTSGGSGCPCCAGMR 673
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A520F323_RHOSO (Uncharacterized protein n=3 Tax=Rhodococcus TaxID=1827 RepID=A0A520F323_RHOSO) HSP 1 Score: 74.7 bits (182), Expect = 1.320e-11 Identity = 73/278 (26.26%), Postives = 115/278 (41.37%), Query Frame = 1 Query: 10 LTLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALLVSTSLYKEIDWIACVRNGIHTPRSGVLTFDLDLIKGIVYKLTAGSNVKLYWRCK--DEGKCGLLKDDPIYTAVDFERCKAKGITREFIDTLTL---------------------GSAQKLVWKCSTTCLCPEHEWFTRASE--HQRYGCPYCSKRYVCPC--SSLQALFPHVAAQLHPCNNVDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWCAG 762 LT+GS R++ ++C +GH + A+V RV GSGC ICAG I + +T +W VRN I KL+ S +++WRC E + +L D C + + D TL GSA++++W+C+ HEW ++ ++ GCP C + V P ++ + VA + N+ P A S ++ W C G H + A +RT+ GS CP+C+G Sbjct: 42 LTVGSQRRVWWRCAAGHEWEAMVRARVRGSGCPICAGREIVPGINDVATTHPDIAAEWHP-VRNSIDPT-----------------KLSIRSARQVWWRCAAGHEWQTQVLHRGKGTKCPD---CWGRSLVPGANDLATLHPSIAAEFHPRNNTDPSRYLPGSAKQVLWQCTRG-----HEWTMAITDRVYRSRGCPECEGKPVLPPRRGAVTVAYSPVAGEWSDRNDRGPEEFALYSNKMAWWRCPAG-------HEYEAKIAHRTNSGSKCPYCSG 286
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Match: A0A836V7E8_9BACT (Uncharacterized protein n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A836V7E8_9BACT) HSP 1 Score: 72.8 bits (177), Expect = 3.230e-11 Identity = 38/106 (35.85%), Postives = 53/106 (50.00%), Query Frame = 1 Query: 445 WKCSTTCLCPEHEWFTRASEHQRYGCPYCSKRYVCPCSSLQALFPHVAAQLHPCNN--VDPRTIASGSPQLYKWICTYGCDECDSPHVWTASAGNRTSGGSGCPWC 756 W+C +H W R +R CP+CSK+ SSLQ LFP +AA++HP N ++ + + P+ W C Y + H+W A NRT SGCP C Sbjct: 216 WRCPVAS---DHSW--REPFKKRMRCPFCSKKKASSTSSLQILFPKLAAEIHPTRNKGINASELRAFGPEYIWWRCRY-----NPSHIWRAKVDNRTRNESGCPEC 311 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176004 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14412 ID=mRNA_14412|Name=jgi.p|Trimin1|176004|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_132:1908..2681- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAACACGTTGACTCTCGGCAGTACAAGGAAACTGCACTTCAAGTGCCCback to top protein sequence of jgi.p|Trimin1|176004 >Trimin1|176004|e_gw1.132.8.1 ID=Trimin1|176004|e_gw1.132.8.1|Name=jgi.p|Trimin1|176004|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=258bp MNTLTLGSTRKLHFKCPSGHVYGAVVSNRVSGSGCNICAGHGIRGTAALLback to top mRNA from alignment at Contig_132:1908..2681- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14412 ID=mRNA_14412|Name=jgi.p|Trimin1|176004|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_132:1908..2681- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_132:1908..2681- >mRNA_14412 ID=mRNA_14412|Name=jgi.p|Trimin1|176004|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=774bp|location=Sequence derived from alignment at Contig_132:1908..2681- (Tribonema minus UTEX_B_3156 )back to top |