mRNA_14370 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: A0A835ZDN9_9STRA (Splicing factor subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDN9_9STRA) HSP 1 Score: 191 bits (485), Expect = 3.840e-61 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1
Query: 82 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDEDEE 348
MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDEDEE
Sbjct: 1 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDEDEE 89
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: D7FXA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXA2_ECTSI) HSP 1 Score: 151 bits (382), Expect = 5.290e-45 Identity = 66/90 (73.33%), Postives = 80/90 (88.89%), Query Frame = 1
Query: 73 VARMAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDED 342
A MAADRFN N+SWDHIQ K+VGTGH DT+KFEWATNQHRD+IAS++GHSD++ Y++VA+N + GRVRY L+EKMLQPCGPPP KDD+D
Sbjct: 32 AATMAADRFNMNRSWDHIQNKYVGTGHSDTTKFEWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDDD 121
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: H3G531_PHYRM (Splicing factor subunit n=20 Tax=Oomycota TaxID=4762 RepID=H3G531_PHYRM) HSP 1 Score: 144 bits (362), Expect = 2.010e-42 Identity = 60/85 (70.59%), Postives = 77/85 (90.59%), Query Frame = 1
Query: 85 AADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 339
AADRFN N+ W+H+QAK+VGTGH DT+KFEWA NQHRDT+AS++GHSD++ Y++VA+N S GRVRYN++EKMLQPCGPPP K++E
Sbjct: 3 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 87
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: A0A6G0XHV2_9STRA (Splicing factor subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHV2_9STRA) HSP 1 Score: 142 bits (359), Expect = 5.590e-42 Identity = 60/85 (70.59%), Postives = 76/85 (89.41%), Query Frame = 1
Query: 82 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDD 336
MAADRFN N+ W+H+Q+K+VGTGH DTSKFEWA NQHRDT+AS++GHSD++ Y++VA+N S GRVR+N++EKMLQPCGPPP K D
Sbjct: 1 MAADRFNINRQWEHLQSKYVGTGHADTSKFEWAVNQHRDTLASHIGHSDMLAYFAVAENESIGRVRFNMLEKMLQPCGPPPKKQD 85
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: A0A8J5IQX8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IQX8_9STRA) HSP 1 Score: 144 bits (362), Expect = 7.230e-42 Identity = 60/85 (70.59%), Postives = 77/85 (90.59%), Query Frame = 1
Query: 85 AADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 339
AADRFN N+ W+H+QAK+VGTGH DT+KFEWA NQHRDT+AS++GHSD++ Y++VA+N S GRVRYN++EKMLQPCGPPP K++E
Sbjct: 45 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 129
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: A0A024TML8_9STRA (Splicing factor subunit n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TML8_9STRA) HSP 1 Score: 141 bits (355), Expect = 2.270e-41 Identity = 57/86 (66.28%), Postives = 77/86 (89.53%), Query Frame = 1
Query: 82 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 339
MAADR+N N+ W+H+QAK+VGTGH DTSKFEWA NQHRDT+AS++GH+D++ Y++VA+N S GR+R+N++EKM+QPCGPPP K +E
Sbjct: 1 MAADRYNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLSYFAVAENESVGRLRFNMLEKMIQPCGPPPKKQEE 86
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: K3WSC6_GLOUD (Splicing factor subunit n=4 Tax=Pythiaceae TaxID=4782 RepID=K3WSC6_GLOUD) HSP 1 Score: 139 bits (351), Expect = 9.240e-41 Identity = 57/86 (66.28%), Postives = 76/86 (88.37%), Query Frame = 1
Query: 82 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 339
MAADRFN N+ W+H+QAK+VGTGH DT+KFEWA NQHRDT+AS++GH D++ Y++ A+N + GRV++N++EKMLQPCGPPP K+DE
Sbjct: 1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHYDMLSYFAAAENEAVGRVKFNMLEKMLQPCGPPPQKEDE 86
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: F0W9E9_9STRA (Splicing factor subunit n=2 Tax=Albugo TaxID=65356 RepID=F0W9E9_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.310e-40 Identity = 58/86 (67.44%), Postives = 77/86 (89.53%), Query Frame = 1
Query: 82 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 339
MAADRFN N+ W+H+QAK+VGTGH DT+KFEWA NQHRDT+AS++GH+D++ Y++VA+N S RVRYN++E+MLQPCGPPP K++E
Sbjct: 1 MAADRFNVNRQWEHLQAKYVGTGHADTTKFEWALNQHRDTLASHIGHADMLLYFAVAENESIARVRYNMLERMLQPCGPPPQKEEE 86
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: A0A1W0A9Q9_9STRA (Splicing factor subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9Q9_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.860e-40 Identity = 58/86 (67.44%), Postives = 76/86 (88.37%), Query Frame = 1
Query: 82 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 339
MAADRFN N+ W+H+QAK+VGTGH DTSKFEWA NQHRDT+AS++GH D++ Y++VA+N S GRVRY ++EKM+QPCGPPP K+++
Sbjct: 1 MAADRFNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHKDMLAYFAVAENESIGRVRYAMLEKMVQPCGPPPIKEED 86
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: A0A3M6VKF8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKF8_9STRA) HSP 1 Score: 142 bits (359), Expect = 2.230e-40 Identity = 63/105 (60.00%), Postives = 82/105 (78.10%), Query Frame = 1
Query: 61 CCWLVARM------------AADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 339
CC L R+ AADRFN N+ W+H+QAK+VGTGH DT+KFEWA NQHRDT+AS++GHSD++ Y++VA+N S GRVRYN++EK+LQPCGPPP K++E
Sbjct: 105 CCELTRRLDSYEIVTADYIQAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMMAYFAVAENESMGRVRYNMLEKILQPCGPPPQKEEE 209 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14370 ID=mRNA_14370|Name=jgi.p|Trimin1|16538|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=395bp|location=Sequence derived from alignment at Contig_130:81770..84197+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGGAGTGTTAGTCGACTACGGTGATTGGAGTGCGCAGCGAGAGCAGCAGCback to top protein sequence of jgi.p|Trimin1|16538 >Trimin1|16538|CE16537_414 ID=Trimin1|16538|CE16537_414|Name=jgi.p|Trimin1|16538|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=90bp MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIback to top mRNA from alignment at Contig_130:81770..84197+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14370 ID=mRNA_14370|Name=jgi.p|Trimin1|16538|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2428bp|location=Sequence derived from alignment at Contig_130:81770..84197+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_130:81770..84197+ >mRNA_14370 ID=mRNA_14370|Name=jgi.p|Trimin1|16538|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=270bp|location=Sequence derived from alignment at Contig_130:81770..84197+ (Tribonema minus UTEX_B_3156 )back to top |