Trimin1|16538|CE16537_414 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|16538
Unique NameTrimin1|16538|CE16537_414
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length90
Homology
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: A0A835ZDN9_9STRA (Splicing factor subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDN9_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.930e-61
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0
Query:    1 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDEDEE 89
            MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDEDEE
Sbjct:    1 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDEDEE 89          
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: D7FXA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXA2_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 8.450e-45
Identity = 65/87 (74.71%), Postives = 79/87 (90.80%), Query Frame = 0
Query:    1 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDED 87
            MAADRFN N+SWDHIQ K+VGTGH DT+KFEWATNQHRD+IAS++GHSD++ Y++VA+N + GRVRY L+EKMLQPCGPPP KDD+D
Sbjct:   35 MAADRFNMNRSWDHIQNKYVGTGHSDTTKFEWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDDD 121          
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: H3G531_PHYRM (Splicing factor subunit n=20 Tax=Oomycota TaxID=4762 RepID=H3G531_PHYRM)

HSP 1 Score: 143 bits (361), Expect = 5.620e-43
Identity = 60/85 (70.59%), Postives = 77/85 (90.59%), Query Frame = 0
Query:    2 AADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 86
            AADRFN N+ W+H+QAK+VGTGH DT+KFEWA NQHRDT+AS++GHSD++ Y++VA+N S GRVRYN++EKMLQPCGPPP K++E
Sbjct:    3 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 87          
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: A0A6G0XHV2_9STRA (Splicing factor subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHV2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.100e-42
Identity = 60/85 (70.59%), Postives = 76/85 (89.41%), Query Frame = 0
Query:    1 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDD 85
            MAADRFN N+ W+H+Q+K+VGTGH DTSKFEWA NQHRDT+AS++GHSD++ Y++VA+N S GRVR+N++EKMLQPCGPPP K D
Sbjct:    1 MAADRFNINRQWEHLQSKYVGTGHADTSKFEWAVNQHRDTLASHIGHSDMLAYFAVAENESIGRVRFNMLEKMLQPCGPPPKKQD 85          
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: A0A8J5IQX8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IQX8_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.020e-42
Identity = 60/85 (70.59%), Postives = 77/85 (90.59%), Query Frame = 0
Query:    2 AADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 86
            AADRFN N+ W+H+QAK+VGTGH DT+KFEWA NQHRDT+AS++GHSD++ Y++VA+N S GRVRYN++EKMLQPCGPPP K++E
Sbjct:   45 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 129          
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: A0A024TML8_9STRA (Splicing factor subunit n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TML8_9STRA)

HSP 1 Score: 140 bits (354), Expect = 6.380e-42
Identity = 57/86 (66.28%), Postives = 77/86 (89.53%), Query Frame = 0
Query:    1 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 86
            MAADR+N N+ W+H+QAK+VGTGH DTSKFEWA NQHRDT+AS++GH+D++ Y++VA+N S GR+R+N++EKM+QPCGPPP K +E
Sbjct:    1 MAADRYNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLSYFAVAENESVGRLRFNMLEKMIQPCGPPPKKQEE 86          
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: K3WSC6_GLOUD (Splicing factor subunit n=4 Tax=Pythiaceae TaxID=4782 RepID=K3WSC6_GLOUD)

HSP 1 Score: 139 bits (350), Expect = 2.600e-41
Identity = 57/86 (66.28%), Postives = 76/86 (88.37%), Query Frame = 0
Query:    1 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 86
            MAADRFN N+ W+H+QAK+VGTGH DT+KFEWA NQHRDT+AS++GH D++ Y++ A+N + GRV++N++EKMLQPCGPPP K+DE
Sbjct:    1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHYDMLSYFAAAENEAVGRVKFNMLEKMLQPCGPPPQKEDE 86          
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: F0W9E9_9STRA (Splicing factor subunit n=2 Tax=Albugo TaxID=65356 RepID=F0W9E9_9STRA)

HSP 1 Score: 139 bits (349), Expect = 3.690e-41
Identity = 58/86 (67.44%), Postives = 77/86 (89.53%), Query Frame = 0
Query:    1 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 86
            MAADRFN N+ W+H+QAK+VGTGH DT+KFEWA NQHRDT+AS++GH+D++ Y++VA+N S  RVRYN++E+MLQPCGPPP K++E
Sbjct:    1 MAADRFNVNRQWEHLQAKYVGTGHADTTKFEWALNQHRDTLASHIGHADMLLYFAVAENESIARVRYNMLERMLQPCGPPPQKEEE 86          
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: A0A1W0A9Q9_9STRA (Splicing factor subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9Q9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.250e-41
Identity = 58/86 (67.44%), Postives = 76/86 (88.37%), Query Frame = 0
Query:    1 MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 86
            MAADRFN N+ W+H+QAK+VGTGH DTSKFEWA NQHRDT+AS++GH D++ Y++VA+N S GRVRY ++EKM+QPCGPPP K+++
Sbjct:    1 MAADRFNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHKDMLAYFAVAENESIGRVRYAMLEKMVQPCGPPPIKEED 86          
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Match: A0A3M6VKF8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKF8_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.250e-40
Identity = 59/85 (69.41%), Postives = 77/85 (90.59%), Query Frame = 0
Query:    2 AADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDE 86
            AADRFN N+ W+H+QAK+VGTGH DT+KFEWA NQHRDT+AS++GHSD++ Y++VA+N S GRVRYN++EK+LQPCGPPP K++E
Sbjct:  125 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMMAYFAVAENESMGRVRYNMLEKILQPCGPPPQKEEE 209          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|16538 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDN9_9STRA2.930e-61100.00Splicing factor subunit n=1 Tax=Tribonema minus Ta... [more]
D7FXA2_ECTSI8.450e-4574.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
H3G531_PHYRM5.620e-4370.59Splicing factor subunit n=20 Tax=Oomycota TaxID=47... [more]
A0A6G0XHV2_9STRA1.100e-4270.59Splicing factor subunit n=1 Tax=Aphanomyces euteic... [more]
A0A8J5IQX8_9STRA2.020e-4270.59Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A024TML8_9STRA6.380e-4266.28Splicing factor subunit n=5 Tax=Saprolegniaceae Ta... [more]
K3WSC6_GLOUD2.600e-4166.28Splicing factor subunit n=4 Tax=Pythiaceae TaxID=4... [more]
F0W9E9_9STRA3.690e-4167.44Splicing factor subunit n=2 Tax=Albugo TaxID=65356... [more]
A0A1W0A9Q9_9STRA5.250e-4167.44Splicing factor subunit n=1 Tax=Thraustotheca clav... [more]
A0A3M6VKF8_9STRA1.250e-4069.41Uncharacterized protein n=2 Tax=Peronospora effusa... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017089Splicing factor 3B, subunit 5PIRSFPIRSF037010SF3B5coord: 1..88
e-value: 2.6E-33
score: 111.9
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PFAMPF07189SF3b10coord: 4..81
e-value: 7.6E-34
score: 115.7
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PANTHERPTHR20978SPLICING FACTOR 3B SUBUNIT 5coord: 2..86
NoneNo IPR availablePANTHERPTHR20978:SF0SPLICING FACTOR 3B SUBUNIT 5coord: 2..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_130contigContig_130:81851..84153 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|16538mRNA_14370Tribonema minus UTEX_B_3156 mRNAContig_130 81770..84197 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|16538|CE16537_414 ID=Trimin1|16538|CE16537_414|Name=jgi.p|Trimin1|16538|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=90bp
MAADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDI
IDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDEDEE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017089Splicing_factor_3B_subunit_5
IPR009846SF3b5/RDS3-10