mRNA_14369 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136236
Unique NamemRNA_14369
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136236 vs. uniprot
Match: A0A835ZAL8_9STRA (Protein-tyrosine phosphatase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL8_9STRA)

HSP 1 Score: 254 bits (649), Expect = 1.160e-85
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1
Query:    1 AADLDTMQKLGIVRVVNCTRGCPNFHPDQLAYLRLELADAGHQKISHCFDAVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHMQKCRPSVSPNPAFMAQLAAYEASLFARP 384
            AADLDTMQKLGIVRVVNCTRGCPNFHPDQLAYLRLELADAGHQKISHCFDAVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHMQKCRPSVSPNPAFMAQLAAYEASLFARP
Sbjct:    1 AADLDTMQKLGIVRVVNCTRGCPNFHPDQLAYLRLELADAGHQKISHCFDAVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHMQKCRPSVSPNPAFMAQLAAYEASLFARP 128          
BLAST of jgi.p|Trimin1|136236 vs. uniprot
Match: A0A836CCP8_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCP8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.000e-48
Identity = 84/127 (66.14%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    1 AADLDTMQKLGIVRVVNCTRGCPNFHPDQLAYLRLELADAGHQKISHCFDAVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHMQKCRPSVSPNPAFMAQLAAYEASLFAR 381
            AADL+ M++L IV V+NCTR CPNF+P++L Y++L L D+  Q ISHCF+ V +AI+ AR  GG CLVHCTAGISRS AL IAYLM+++RW LAAALAH+Q  RPS SP PAFMAQLAAYE  LF R
Sbjct:   31 AADLEAMRQLRIVIVINCTRSCPNFYPEELVYVQLGLEDSERQCISHCFEGVAAAIEHARTLGGVCLVHCTAGISRSAALAIAYLMRSQRWPLAAALAHVQARRPSASPRPAFMAQLAAYEVGLFGR 157          
BLAST of jgi.p|Trimin1|136236 vs. uniprot
Match: A0A835ZGG2_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGG2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.640e-24
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    1 AADLDTMQKLGIVRVVNCTRGCPNFHPDQLAYLRLELADAGHQKISHCFDAVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHMQKCRPSVSPNPAFMAQLAAYEASLF 375
            AAD D +++ GI  ++NCT   P F P+   YL + L D+  Q I    ++    ID AR     CLVHC+AG+SRS ++VIAYLMK +  SL  AL   ++ RPSVSPN  FMA+LA YEA LF
Sbjct:   27 AADQDALRRHGISHIINCTSRHPYF-PEHFNYLCVPLRDSPDQPIREVLESCFQLIDEAREQDTCCLVHCSAGMSRSASIVIAYLMKREGMSLLEALGFARERRPSVSPNSGFMAELARYEADLF 150          
BLAST of jgi.p|Trimin1|136236 vs. uniprot
Match: UPI0018854F3F (dual specificity protein phosphatase 10-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018854F3F)

HSP 1 Score: 102 bits (254), Expect = 2.680e-23
Identity = 58/125 (46.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 AADLDTMQKLGIVRVVNCTRGCPNFHPDQ-LAYLRLELADAGHQKISHCFDAVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHMQKCRPSVSPNPAFMAQLAAYEASL 372
            A DL  ++  GI RV+N T   P +H +Q ++Y  L  AD+G Q IS  FD  V  IDCAR  G   LVHC AG+SRSP + IAY+MK    S+  A  H++  RP +SPN  FM QL  +E  L
Sbjct:  240 AKDLVGLKSCGITRVLNVTAHVPGYHQEQGISYKTLPAADSGQQNISQYFDEAVEFIDCARRLGARVLVHCVAGVSRSPTIAIAYIMKRLPMSMLEAYQHVKARRPIISPNLNFMGQLLEWERRL 364          
BLAST of jgi.p|Trimin1|136236 vs. uniprot
Match: UPI001C924BBC (dual specificity protein phosphatase 10-like n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C924BBC)

HSP 1 Score: 101 bits (252), Expect = 1.110e-22
Identity = 58/125 (46.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 AADLDTMQKLGIVRVVNCTRGCPNFHPDQ-LAYLRLELADAGHQKISHCFDAVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHMQKCRPSVSPNPAFMAQLAAYEASL 372
            A DLD+++  GI RV+N T   P +H  Q ++Y  L  AD+G Q IS  FD  V  IDCAR  G   LVHC AG+SRSP + IAY+MK    S+  A   ++  RP +SPN  FM QL  +E  L
Sbjct:  317 AKDLDSLKNCGITRVLNVTAHVPGYHQQQGISYKTLPAADSGQQNISQYFDEAVEFIDCARRLGTRVLVHCVAGVSRSPTIAIAYIMKCLPMSMVEAYQLVKARRPIISPNLNFMGQLLEWERCL 441          
BLAST of jgi.p|Trimin1|136236 vs. uniprot
Match: A0A814GHY3_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A814GHY3_ADIRI)

HSP 1 Score: 100 bits (248), Expect = 1.680e-22
Identity = 56/126 (44.44%), Postives = 76/126 (60.32%), Query Frame = 1
Query:    1 AADLDTMQKLGIVRVVNCTRGCPNFHPDQLAYLRLELADAGHQKISHCFDAVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHMQKCRPSVSPNPAFMAQLAAYEASLFA 378
            A +LD + + GI  ++NCT   P +   +  YLRL++ D   Q I   F+  +  ID A  + G  LVHC+AGISRSP LV+AYLMK KRW+L  A   M+K R  V PN +F+ QL  +E +L A
Sbjct:  200 AQNLDRLTEHGITHIINCTPDLPFYWEKKHEYLRLDVLDLPSQNIRKHFETAIDFIDKALQSNGKVLVHCSAGISRSPTLVLAYLMKKKRWTLDEAFEKMRKLRRIVDPNVSFIIQLREWEKTLMA 325          
BLAST of jgi.p|Trimin1|136236 vs. uniprot
Match: UPI001C70FE58 (dual specificity protein phosphatase 10-like n=2 Tax=Penaeus TaxID=133894 RepID=UPI001C70FE58)

HSP 1 Score: 99.4 bits (246), Expect = 5.170e-22
Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    1 AADLDTMQKLGIVRVVNCTRGCPNFHPDQ-LAYLRLELADAGHQKISHCFDAVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHMQKCRPSVSPNPAFMAQLAAYEASL 372
            A DL  +Q LGI RV+N T   P +H D  + Y  L   D+GHQ +   FD  +  ID AR +G   LVHC AG+SRSP +VIAYLMK  R ++  +  +++  RP +SPN  FM QL  +E +L
Sbjct:  268 AQDLRVLQALGITRVLNVTSHVPGYHQDSGICYKTLPAMDSGHQNLRQYFDEAIHFIDEARQSGERVLVHCQAGVSRSPTIVIAYLMKHTRRTMVDSYKYVKARRPIISPNLNFMGQLVEWETAL 392          
BLAST of jgi.p|Trimin1|136236 vs. uniprot
Match: UPI001E673A3E (dual specificity protein phosphatase 10-like isoform X1 n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E673A3E)

HSP 1 Score: 98.6 bits (244), Expect = 9.220e-22
Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    1 AADLDTMQKLGIVRVVNCTRGCPNFHPDQ-LAYLRLELADAGHQKISHCFDAVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHMQKCRPSVSPNPAFMAQLAAYEASL 372
            A DL  +Q LGI RV+N T   P +H D  + Y  L   D+GHQ +S  F   +  ID AR AG   LVHC AG+SRSP +VIAYLMK  R ++  +  +++  R  +SPN  FM QL  +EA+L
Sbjct:  259 AQDLRVLQALGISRVLNVTSHVPGYHEDSGICYKTLPAMDSGHQNLSQYFHEAIHFIDEARQAGARVLVHCQAGVSRSPTIVIAYLMKHTRMTMVDSYKYVKSRRLIISPNLNFMGQLVEWEAAL 383          
BLAST of jgi.p|Trimin1|136236 vs. uniprot
Match: A0A0N7ZBB6_SCYOL (Protein-tyrosine-phosphatase n=4 Tax=Pleocyemata TaxID=6692 RepID=A0A0N7ZBB6_SCYOL)

HSP 1 Score: 97.1 bits (240), Expect = 3.590e-21
Identity = 55/125 (44.00%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 AADLDTMQKLGIVRVVNCTRGCPNFHPDQ-LAYLRLELADAGHQKISHCFDAVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHMQKCRPSVSPNPAFMAQLAAYEASL 372
            A DL  +Q LGI RV+N T   P +H D  + Y  L   D+GHQ +   FD  +  ID AR +G   LVHC AG+SRSP +VIAYLMK  R ++  +  +++  R  +SPN  FM QL  +E +L
Sbjct:  267 AQDLRVLQALGITRVLNVTSHVPGYHQDSGICYKTLPAMDSGHQNLRQYFDEAIHFIDEARQSGARVLVHCQAGVSRSPTIVIAYLMKHTRMTMVDSYKYVKARRIIISPNLNFMGQLVEWETAL 391          
BLAST of jgi.p|Trimin1|136236 vs. uniprot
Match: UPI0008F9C427 (dual specificity protein phosphatase 10-like isoform X1 n=3 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C427)

HSP 1 Score: 97.4 bits (241), Expect = 4.320e-21
Identity = 57/129 (44.19%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    1 AADLDTMQKLGIVRVVNCTRGCPNFHPDQ-LAYLRLELADAGHQKISHCFDAVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHMQKCRPSVSPNPAFMAQLAAYEASLFARP 384
            A +LD ++ LGI RV+N T   P +H ++ + Y  L  AD+ HQ +   F+     I+ AR +GG+ LVHC AGISRSP + IAY+MK +R SL  A   ++  R  +SPN  FM QL   E SL A P
Sbjct:  375 AENLDVLRNLGISRVLNVTSELPGYHEERGILYKHLPAADSSHQNLKQYFEEAFHFIEEARQSGGSVLVHCQAGISRSPTIAIAYMMKHRRLSLIEAYKEVKNARTIISPNFNFMGQLFELEQSLKATP 503          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136236 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAL8_9STRA1.160e-85100.00Protein-tyrosine phosphatase-like protein (Fragmen... [more]
A0A836CCP8_9STRA1.000e-4866.14Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A835ZGG2_9STRA1.640e-2448.00Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
UPI0018854F3F2.680e-2346.40dual specificity protein phosphatase 10-like n=1 T... [more]
UPI001C924BBC1.110e-2246.40dual specificity protein phosphatase 10-like n=2 T... [more]
A0A814GHY3_ADIRI1.680e-2244.44Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
UPI001C70FE585.170e-2244.80dual specificity protein phosphatase 10-like n=2 T... [more]
UPI001E673A3E9.220e-2245.60dual specificity protein phosphatase 10-like isofo... [more]
A0A0N7ZBB6_SCYOL3.590e-2144.00Protein-tyrosine-phosphatase n=4 Tax=Pleocyemata T... [more]
UPI0008F9C4274.320e-2144.19dual specificity protein phosphatase 10-like isofo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_130contigContig_130:79629..80215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136236|gw1.130.21.1
BRITEko00000,ko00001,ko01000,ko01009
KEGG Pathwayko04360,ko04810,map04360,map04810
KEGG koko:K05766
EC3.1.3.16,3.1.3.48
GOsGO:0000278,GO:0000902,GO:0000904,GO:0001654,GO:0003674,GO:0003779,GO:0003824,GO:0004721,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006996,GO:0007010,GO:0007049,GO:0007097,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007409,GO:0007417,GO:0007420,GO:0007423,GO:0007584,GO:0008064,GO:0008092,GO:0008138,GO:0008150,GO:0008152,GO:0009605,GO:0009653,GO:0009719,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010591,GO:0010639,GO:0010646,GO:0010647,GO:0010769,GO:0010941,GO:0010942,GO:0010975,GO:0014070,GO:0014074,GO:0014910,GO:0014911,GO:0016020,GO:0016043,GO:0016311,GO:0016319,GO:0016787,GO:0016788,GO:0016791,GO:0019222,GO:0019538,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0030027,GO:0030029,GO:0030030,GO:0030036,GO:0030154,GO:0030182,GO:0030334,GO:0030335,GO:0030424,GO:0030426,GO:0030427,GO:0030496,GO:0030832,GO:0030833,GO:0030837,GO:0031175,GO:0031252,GO:0031323,GO:0031333,GO:0031344,GO:0031644,GO:0031646,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031915,GO:0032153,GO:0032154,GO:0032155,GO:0032268,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032535,GO:0032879,GO:0032880,GO:0032956,GO:0032970,GO:0032989,GO:0032990,GO:0033043,GO:0033198,GO:0033267,GO:0035690,GO:0036211,GO:0040012,GO:0040017,GO:0042221,GO:0042391,GO:0042493,GO:0042578,GO:0042995,GO:0043005,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043412,GO:0044057,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0045177,GO:0045595,GO:0045664,GO:0046683,GO:0046907,GO:0048167,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050770,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050804,GO:0050806,GO:0050807,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051270,GO:0051272,GO:0051493,GO:0051494,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051716,GO:0051960,GO:0060255,GO:0060284,GO:0060322,GO:0060341,GO:0060491,GO:0061564,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071318,GO:0071407,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0097458,GO:0098590,GO:0098815,GO:0098916,GO:0098976,GO:0099175,GO:0099177,GO:0099536,GO:0099537,GO:0106104,GO:0110053,GO:0120025,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1901214,GO:1901216,GO:1901564,GO:1901626,GO:1901628,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902743,GO:1902903,GO:1902904,GO:1903827,GO:1903829,GO:1903909,GO:1903911,GO:1904717,GO:1904719,GO:1904752,GO:1904754,GO:1905475,GO:1905477,GO:2000026,GO:2000145,GO:2000147,GO:2000463
Preferred nameSSH3
Descriptionpositive regulation of AMPA glutamate receptor clustering
COG categoryV
Max annot lvl33208|Metazoa
EggNOG OGsCOG2453@1|root,KOG1716@2759|Eukaryota,38B5R@33154|Opisthokonta,3BAJW@33208|Metazoa,3CY7K@33213|Bilateria,48510@7711|Chordata
Evalue2.92e-21
Seed ortholog7719.XP_002120412.1
Hectar predicted targeting categoryother localisation
TranscriptId136558
TrackFilteredModels1
ProteinId136236
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136236gene_14369Tribonema minus UTEX_B_3156 geneContig_130 79629..80215 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14369_1exon_14369_1Tribonema minus UTEX_B_3156 exonContig_130 79629..79852 +
exon_14369_2exon_14369_2Tribonema minus UTEX_B_3156 exonContig_130 80056..80215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14369CDS_14369Tribonema minus UTEX_B_3156 CDSContig_130 79629..79852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136236Trimin1|136236|gw1.130.21.1Tribonema minus UTEX_B_3156 polypeptideContig_130 79629..80215 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14369 ID=mRNA_14369|Name=jgi.p|Trimin1|136236|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_130:79629..80215+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGCAGATCTGGACACCATGCAGAAACTCGGCATAGTGCGCGTTGTCAA
CTGTACCCGCGGCTGTCCCAACTTCCACCCTGACCAGCTCGCCTACCTGC
GACTCGAATTGGCGGATGCCGGGCACCAGAAAATATCCCACTGCTTTGAT
GCAGTGGTATCAGCAATAGACTGTGCGAGGGCAGCGGGAGGCGCCTGCCT
GGTTCACTGCACAGCCGGCATCAGCCGATCGCCGGCGCTGGTCATCGCCT
ACCTCATGAAGACCAAGCGGTGGTCGCTGGCCGCTGCCCTGGCGCACATG
CAGAAGTGCCGCCCGTCCGTAAGCCCCAACCCCGCCTTCATGGCGCAGCT
CGCCGCGTATGAGGCGTCCCTCTTCGCGCGCCCG
back to top

protein sequence of jgi.p|Trimin1|136236

>Trimin1|136236|gw1.130.21.1 ID=Trimin1|136236|gw1.130.21.1|Name=jgi.p|Trimin1|136236|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
AADLDTMQKLGIVRVVNCTRGCPNFHPDQLAYLRLELADAGHQKISHCFD
AVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHM
QKCRPSVSPNPAFMAQLAAYEASLFARP
back to top

mRNA from alignment at Contig_130:79629..80215+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14369 ID=mRNA_14369|Name=jgi.p|Trimin1|136236|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=587bp|location=Sequence derived from alignment at Contig_130:79629..80215+ (Tribonema minus UTEX_B_3156 )
GCGGCAGATCTGGACACCATGCAGAAACTCGGCATAGTGCGCGTTGTCAA CTGTACCCGCGGCTGTCCCAACTTCCACCCTGACCAGCTCGCCTACCTGC GACTCGAATTGGCGGATGCCGGGCACCAGAAAATATCCCACTGCTTTGAT GCAGTGGTATCAGCAATAGACTGTGCGAGGGCAGCGGGAGGCGCCTGCCT GGTTCACTGCACAGCCGGCATCAGGTAAATGGCTGCTTGCAAATCTGAAA TGACGCAATGTATGACTGTGGCAGCTATCGTTGATTGGCGCCAGGCTGAG AGTCGTGCTTGAAGTTTCGAACAACAACGTTCCTCGCGCGCTGCTGGACA CCCAAACTGCCACAATAGCGTGTGCGGGCACGTTCTGACGCCTCCCTCGC GCGCGCACACCCCCTGCTCCGCCGCAGCCGATCGCCGGCGCTGGTCATCG CCTACCTCATGAAGACCAAGCGGTGGTCGCTGGCCGCTGCCCTGGCGCAC ATGCAGAAGTGCCGCCCGTCCGTAAGCCCCAACCCCGCCTTCATGGCGCA GCTCGCCGCGTATGAGGCGTCCCTCTTCGCGCGCCCG
back to top

Coding sequence (CDS) from alignment at Contig_130:79629..80215+

>mRNA_14369 ID=mRNA_14369|Name=jgi.p|Trimin1|136236|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_130:79629..80215+ (Tribonema minus UTEX_B_3156 )
GCGGCAGATCTGGACACCATGCAGAAACTCGGCATAGTGCGCGTTGTCAA
CTGTACCCGCGGCTGTCCCAACTTCCACCCTGACCAGCTCGCCTACCTGC
GACTCGAATTGGCGGATGCCGGGCACCAGAAAATATCCCACTGCTTTGAT
GCAGTGGTATCAGCAATAGACTGTGCGAGGGCAGCGGGAGGCGCCTGCCT
GGTTCACTGCACAGCCGGCATCAGCCGATCGCCGGCGCTGGTCATCGCCT
ACCTCATGAAGACCAAGCGGTGGTCGCTGGCCGCTGCCCTGGCGCACATG
CAGAAGTGCCGCCCGTCCGTAAGCCCCAACCCCGCCTTCATGGCGCAGCT
CGCCGCGTATGAGGCGTCCCTCTTCGCGCGCCCG
back to top