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Homology
BLAST of jgi.p|Trimin1|353688 vs. uniprot
Match: A0A836CJB1_9STRA (Ion_trans domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJB1_9STRA) HSP 1 Score: 1646 bits (4262), Expect = 0.000e+0 Identity = 878/878 (100.00%), Postives = 878/878 (100.00%), Query Frame = 1
Query: 1 MAVDSADAAIPAVLEPMPPPLVNEEGFAFYTPARHSAPTATMNAAADAIVDISAELAERRTRWRYLAEKADWLLGSTSHARDDAAAARKCQPQDPAVDRYEAASYYIKWVRGGRVRAGSHNSSGGWADFAHCMLVPAPWEGALPPGPLSRDAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFFLFEIALLFMIRDRCSGRPFYHTNVWATMRLACVWLQLVDILIFLWGRYTYEGTALSMEFFRRARAGCSRAPRLADAPALRSARRSGQQRSGAAAKCALKQERVAAVRKRGQYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAAFVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFVLDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRLVIRQRARALSMAFDCLRGANIGSSDGSXXXXXXXXXXXXXXXXXXXXXXXXXXSTGHARGGSGSSGVPAVVGGAEVTADDWVALMAHLRPDLSGRGCRLLFNTVGEGCGGGDLGPTRCDRAQFFELCALVQAHIEGGAEDWRAPLRGSASSMPQPQRXXXXXXXXXXXXXXXXALARRCGSTVRALRRRVRRYVRWTVATPFNNWWGLTHADDIHVRRAVNNVASVVHAVLLAVQGTVLPGEQDPAGNTAFEGRELHMALLEYTLVVYFWADAAAVLWAGGAARALSDAYWCLGVALNAVATAWVAGAWPEGRDRAYYVAMAPRALGLWRVVHQLQGTRSDVAERLARVLPTLLRSTSVLLAFVYSSALCAYGMLWHT 2634
MAVDSADAAIPAVLEPMPPPLVNEEGFAFYTPARHSAPTATMNAAADAIVDISAELAERRTRWRYLAEKADWLLGSTSHARDDAAAARKCQPQDPAVDRYEAASYYIKWVRGGRVRAGSHNSSGGWADFAHCMLVPAPWEGALPPGPLSRDAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFFLFEIALLFMIRDRCSGRPFYHTNVWATMRLACVWLQLVDILIFLWGRYTYEGTALSMEFFRRARAGCSRAPRLADAPALRSARRSGQQRSGAAAKCALKQERVAAVRKRGQYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAAFVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFVLDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRLVIRQRARALSMAFDCLRGANIGSSDGSXXXXXXXXXXXXXXXXXXXXXXXXXXSTGHARGGSGSSGVPAVVGGAEVTADDWVALMAHLRPDLSGRGCRLLFNTVGEGCGGGDLGPTRCDRAQFFELCALVQAHIEGGAEDWRAPLRGSASSMPQPQRXXXXXXXXXXXXXXXXALARRCGSTVRALRRRVRRYVRWTVATPFNNWWGLTHADDIHVRRAVNNVASVVHAVLLAVQGTVLPGEQDPAGNTAFEGRELHMALLEYTLVVYFWADAAAVLWAGGAARALSDAYWCLGVALNAVATAWVAGAWPEGRDRAYYVAMAPRALGLWRVVHQLQGTRSDVAERLARVLPTLLRSTSVLLAFVYSSALCAYGMLWHT
Sbjct: 1 MAVDSADAAIPAVLEPMPPPLVNEEGFAFYTPARHSAPTATMNAAADAIVDISAELAERRTRWRYLAEKADWLLGSTSHARDDAAAARKCQPQDPAVDRYEAASYYIKWVRGGRVRAGSHNSSGGWADFAHCMLVPAPWEGALPPGPLSRDAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFFLFEIALLFMIRDRCSGRPFYHTNVWATMRLACVWLQLVDILIFLWGRYTYEGTALSMEFFRRARAGCSRAPRLADAPALRSARRSGQQRSGAAAKCALKQERVAAVRKRGQYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAAFVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFVLDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRLVIRQRARALSMAFDCLRGANIGSSDGSXXXXXXXXXXXXXXXXXXXXXXXXXXSTGHARGGSGSSGVPAVVGGAEVTADDWVALMAHLRPDLSGRGCRLLFNTVGEGCGGGDLGPTRCDRAQFFELCALVQAHIEGGAEDWRAPLRGSASSMPQPQRXXXXXXXXXXXXXXXXALARRCGSTVRALRRRVRRYVRWTVATPFNNWWGLTHADDIHVRRAVNNVASVVHAVLLAVQGTVLPGEQDPAGNTAFEGRELHMALLEYTLVVYFWADAAAVLWAGGAARALSDAYWCLGVALNAVATAWVAGAWPEGRDRAYYVAMAPRALGLWRVVHQLQGTRSDVAERLARVLPTLLRSTSVLLAFVYSSALCAYGMLWHT 878
BLAST of jgi.p|Trimin1|353688 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE) HSP 1 Score: 186 bits (473), Expect = 7.140e-45 Identity = 213/873 (24.40%), Postives = 331/873 (37.92%), Query Frame = 1
Query: 133 AADAIVDISAELAERRTRWRYLAEKADWLLGSTSH-ARDDAAAARKCQPQ-DPAVDRYEAASYYIKWVRGGRVRAGSHNSSGGWADFAHCMLVPAPWEGALPPGPLSRDAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFFLFEIALLFMIR-------------DRCSGRPF------------YHTNV-----WATMRLACVWLQLVDILIFLWGRYTYEGTALSMEFFRRARAGCSRAPRLADAPALRSARRSGQQRSGAAAKCALKQERVAAVRKRGQYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAAFVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFVLDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRLVIRQRARALSMAFDCLRGANIGSSDGSXXXXXXXXXXXXXXXXXXXXXXXXXXSTGHARGGSGSSGVPAVVGGAEVTADDWVALMAHLRPDLSGRGCRLLFNTVGEGCG-----GGDLGPTRCDRAQFFELCALVQAHIEGGAEDWRAPLRGSASSMPQPQRXXXXXXXXXXXXXXXXALARRCGSTVRALRRRVRRYVRWTVATPFNNWWGLTHADDIHVRRAVNNVASVVHAVLLAVQGTVLPGEQDPAGNTAFEGRELHMALLEYTLVVYFWADAAAVLWAGGAARALSDAYWCLGVALNAVATAWVAGAWPEGRD--RAYYVAMAPRALGLWRVVHQLQGTRSDVAERLARVLPTLLRSTSVLLAFVYSSALCAYGMLWHT 2634
A++ IS +L E+ RW+ L + L GS + A +D + + QP VD++E AS Y+K DA+ GR+ +H Q L A++L R + + N+ L+LP++E+ C ++ I + LD +SL GWRPT+LGS WLE +C +++++ + + DR R +H+++ W R V L +L ++ Y ++ T ++SR F++I+ YL+ FV G+ VLPR++PV +FVV Y ++GY+ + L++LDLF + +T LRMFTS+ F+LD+E +Y + GIR+ +Y ++ + L ALV AVAN+ FQ Y V QR AL+ AF LR G+ V +DWV LMA LRPD + LF+ + GG+ R + FF LCAL A +D A +RR GS + +R+R+ + W++ + + R V NVA VV + ++G DP EGR L L+ YF A+ + GA + LG+ LN + + G W +G Y + A R + LW V+H+L T S+VA RL V P +LR++ VL + YS ++ A+ M T
Sbjct: 81 ASEVATAISRDLVEKAERWKLLGGEP--LTGSPARFAHEDRSQLPEVQPLLAHDVDKHEVASIYVK------------------------------------------DALAGRESPTCMHNQNSLRALKLVRNKAWNQLLNICTIVHLMLPIVEIQRCLPCM--GMQKIPES-----LDSNSL--HTGWRPTLLGSMWLECLLCLLYVYDLYKVALASNHVHKRSHRGGGSDRDGDRDIGVSKGEGAKASSWHSSLARLPPWQLARTCMVALLAFGLLTNIFAHYAFKITW-------------------------------------------------------HRWSRVTLPFLFISRRTYLKHFVGGVIRVLPRMLPVVFLMSFVVFFYAFIGYILYRDEPRTSSLLQDLDLFSQPSSSAMTFLRMFTSIPFMLDVEHIYAGTKGIRVMGLSYGVIMVIFLGALVPAVANRNFQHH----YNWVKEQRRLALTRAFMLLRREEDGT----------------------------------------------------VGREDWVRLMACLRPDCNAGHTSALFDAAKKADDETVSFGGEDDRNRLSKGGFFMLCALGTASFSRARKD--------------------------------DAGSRRSGSKWKRIRQRLDAALSWSMP-----------GSNFPLSRQVLNVAVVVQGYQIVLEG------DDP------EGRPTWAYPLGGFLIAYFCVQASLRMIVDGARLYIMQWRHALGMCLNLIGVTYYMGLWFDGTGWHSFYKILQASRVVILWNVLHRLGSTSSEVARRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCAT 734
BLAST of jgi.p|Trimin1|353688 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI) HSP 1 Score: 166 bits (421), Expect = 1.420e-38 Identity = 148/525 (28.19%), Postives = 222/525 (42.29%), Query Frame = 1
Query: 1081 QYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAAFVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFVLDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRLVIRQRARALSMAFDCLRGANIGSSDGSXXXXXXXXXXXXXXXXXXXXXXXXXXSTGHARGGSGSSGVPAVVGGAEVTADDWVALMAHLRPDLSGRGCRLLFNTVGEGCG-----GGDLGPTRCDRAQFFELCALVQAHIEGGAEDWRAPLRGSASSMPQPQRXXXXXXXXXXXXXXXXALARRCGSTVRALRRRVRRYVRWTVATPFNNWWGLTHADDIHVRRAVNNVASVVHAVLLAVQGTVLPGEQDPAGNTAFEGRELHMALLEYTLVVYFWADAAAVLWAGGAARALSDAYWCLGVALNAVATAWVAGAWPEGRD--RAYYVAMAPRALGLWRVVHQLQGTRSDVAERLARVLPTLLRSTSVLLAFVYSSALCAYGMLWHT 2634
++SR F++I+ YL+ FV G+ VLPR++PVA +FVV Y ++GY+ + L++LDLF + +T LR+FTS+ F+LD+E +Y + GIR+ +Y ++ + L ALV AVAN+ FQ QS ++Y V QR AL+ AF LR + V +DWV LMA LRPD + LF+ + GG+ R + FF LCAL A +D A +RR GS + +R+R+ + W++ + + R V NVA VV + ++G DP E R L L+ YF A+ + GA + LG+ LN + A+ G W +G Y + A R + LW V+H+L T S+VA RL V P +LR++ VL + YS ++ A+ M T
Sbjct: 184 RWSRVTLPFLFISRRTYLKHFVGGVIRVLPRMLPVAFLMSFVVFFYAFIGYVLYRDEPRSSSLLQDLDLFSQPSSSAMTFLRIFTSIPFMLDVEHIYAGTKGIRVMGLSYGVIMVIFLGALVPAVANRNFQYQSKESYNWVKEQRKLALTRAFMLLRREEDRT----------------------------------------------------VGREDWVRLMACLRPDCNAGHTSALFDAAKKAEDETVSLGGEDDRNRLSKGGFFMLCALGTASFSRARKD--------------------------------DAGSRRSGSKWKRIRQRLDAALSWSMP-----------GSNFPLSRQVLNVAVVVQGYQIVLEG------DDP------ERRPTWAYPLGGFLIAYFCVQASLWMIVDGARLYIRQWRHALGMCLNLIGVAYYMGLWFDGTGWHSFYQILQASRVVILWNVLHRLGSTSSEVATRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCAT 601
BLAST of jgi.p|Trimin1|353688 vs. uniprot
Match: D7FGS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS0_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 5.180e-5 Identity = 34/101 (33.66%), Postives = 52/101 (51.49%), Query Frame = 1
Query: 448 RDAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFF 750
RDA+ GR A IH +R + A++ R + N+ L+LP++E+ C RS L+ ++L F+GWRPT LGS W+E +C F+
Sbjct: 128 RDALAGRDSSACIHNERSIRALKWFRNDAWNSLLNICTLVHLILPMVEIQRCLSCMGPHRRS-------ASLEDNTL--FLGWRPTSLGSLWIECVLCVFY 219
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|353688|estExt_Genemark1.C_Ctg_1780021 |
| Description | Ion transport protein |
| COG category | PT |
| Max annot lvl | 4776|Peronosporales |
| EggNOG OGs | KOG2301@1|root,KOG2301@2759|Eukaryota,3QDTK@4776|Peronosporales |
| Evalue | 7.47e-08 |
| Seed ortholog | 4787.PITG_05332T0 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 354010 |
| Track | FilteredModels1 |
| ProteinId | 353688 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14265 ID=mRNA_14265|Name=jgi.p|Trimin1|353688|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2637bp|location=Sequence derived from alignment at Contig_178:125611..131994- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGCTGTGGATTCAGCTGATGCTGCGATCCCGGCTGTCCTGGAGCCCAT
GCCACCGCCCCTAGTCAATGAAGAAGGCTTCGCCTTCTACACGCCCGCGC
GGCACTCCGCGCCGACCGCCACCATGAACGCCGCCGCGGACGCGATCGTC
GACATCAGCGCGGAGCTGGCGGAGCGGCGCACGCGCTGGCGCTACCTGGC
GGAGAAGGCGGACTGGCTGCTGGGCAGCACGTCGCACGCGCGCGACGACG
CCGCCGCGGCGCGCAAGTGCCAGCCGCAGGACCCGGCCGTGGACCGCTAC
GAGGCCGCCAGCTACTACATCAAGTGGGTGCGCGGCGGCCGCGTGCGCGC
TGGCAGCCACAATAGCAGTGGCGGCTGGGCCGACTTCGCGCACTGCATGC
TGGTTCCAGCACCATGGGAGGGCGCGCTGCCCCCAGGTCCATTGTCGAGG
GACGCCATGCACGGCCGCAAGATCATCGCGCACATCCACACGCAGCGGCA
GCTCAGCGCCGTGCGGCTGGCGCGCGCGCGCCCGATCATACTCATCTTCA
ACGTCCTGTGCTTCTTCCAGCTGCTGCTGCCGCTCATCGAGATGCCAATG
GGGTGGGAGTGCAGGGAGGGCGCGGTGAGGTCCATACAGGATGGCGGGGT
GCTGTGTGAGCTGGACGGGGACTCGCTGGCGTGGTTTGTCGGGTGGCGGC
CGACGATGCTGGGGTCCTCCTGGCTGGAGCTGCCCATTTGCGCATTTTTC
CTCTTTGAGATTGCACTACTCTTTATGATTCGGGACAGGTGCTCCGGCCG
GCCGTTCTACCACACCAACGTGTGGGCCACGATGCGCCTCGCGTGCGTGT
GGCTGCAGCTCGTCGACATCCTCATCTTCCTCTGGGGGCGCTACACGTAC
GAGGGCACCGCGCTGTCCATGGAGTTCTTCAGGCGCGCGCGCGCTGGCTG
CTCGCGCGCGCCGCGCCTTGCCGATGCCCCCGCGCTGCGCAGCGCGAGGC
GCAGCGGACAGCAGCGCTCAGGAGCTGCTGCCAAATGCGCGTTGAAGCAG
GAGCGCGTCGCCGCTGTGCGGAAACGCGGGCAGTACAGCCGCGCCCTCAC
CTTCTTCATCTACATCACCAACCACCAGTACCTGCGCCTCTTCGTGAAGG
GCCTGTGGCACGTGCTGCCGCGCCTGATGCCGGTCGCCACCGCCGCGGCG
TTCGTCGTCTGCCTCTACGGCTACGTGGGGTACCTGGCCTTCAACCACAC
GCGCGCGCAGCCCGACGCTTTGCGTGAGCTGGACCTCTTCCGCACGCTGC
CCGGCGCGATGCTCACGGCGCTGCGCATGTTCACGTCCGTCGTCTTCGTG
CTCGACCTCGAGTTCCTGTACCGGCGCAGCCCGGGCATCCGCATCTACTG
CGCGACCTACGCGCTGCTCGCGGCGGTGCTGCTGTGCGCGCTCGTGACCG
CCGTCGCCAACAAGCTCTTCCAGCAGCAGTCGCTCGACGCGTACCGCCTC
GTCATCCGGCAGCGCGCGCGCGCCCTGTCCATGGCCTTTGACTGCCTGCG
CGGCGCGAACATCGGCAGCAGCGACGGCAGCAGCGGCGGCGGCGGCGCCG
CCGAGGACGGTGGCGGCAAAAGCCCCGTGCCCAACGGCGGCGGCAAGGGC
GGCGGCGGCAGCACCGGCCACGCCCGCGGCGGCAGCGGCAGCAGCGGCGT
GCCCGCTGTCGTCGGCGGCGCCGAAGTGACCGCGGATGACTGGGTCGCGC
TGATGGCGCACCTGCGGCCGGACCTCTCCGGGCGCGGCTGCCGGCTGCTG
TTCAACACGGTGGGCGAGGGCTGCGGCGGCGGCGACTTGGGGCCCACGCG
CTGCGACCGCGCGCAGTTCTTTGAGCTGTGCGCGCTGGTGCAGGCGCACA
TCGAAGGCGGCGCCGAGGACTGGCGCGCGCCGCTGCGCGGGTCGGCCAGC
AGCATGCCGCAGCCGCAGCGGCGCAACGGCGGTGGCGGCGGCGGCGGCGC
CGAGGGCGGCTGCTGCGCCGCACTGGCGCGCCGCTGCGGCAGCACCGTGC
GCGCGCTGCGGCGGCGCGTGCGGCGCTACGTGCGGTGGACGGTGGCGACG
CCGTTCAACAACTGGTGGGGGCTCACGCACGCGGACGACATACACGTGCG
CCGCGCCGTCAACAACGTGGCAAGCGTCGTGCACGCCGTCCTGCTGGCCG
TCCAGGGCACGGTCCTCCCCGGCGAGCAGGACCCCGCGGGCAACACGGCC
TTCGAGGGGCGCGAGCTCCACATGGCGCTGCTCGAGTACACCCTCGTCGT
GTACTTCTGGGCGGACGCGGCGGCGGTGCTCTGGGCCGGCGGCGCGGCGC
GCGCGCTGTCGGACGCGTACTGGTGCCTCGGCGTCGCGCTCAACGCCGTC
GCGACGGCGTGGGTCGCGGGCGCGTGGCCCGAGGGGCGTGACCGCGCGTA
CTACGTGGCCATGGCGCCGCGCGCGCTCGGGCTGTGGCGCGTCGTCCACC
AGCTGCAGGGGACGCGCTCCGACGTCGCGGAGCGCCTCGCGCGCGTGCTG
CCGACGCTGCTGCGCTCGACGTCCGTCCTGCTCGCGTTCGTGTACTCGTC
CGCGCTCTGCGCGTACGGCATGCTGTGGCACACGTGA back to topprotein sequence of jgi.p|Trimin1|353688 >Trimin1|353688|estExt_Genemark1.C_Ctg_1780021 ID=Trimin1|353688|estExt_Genemark1.C_Ctg_1780021|Name=jgi.p|Trimin1|353688|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=879bp
MAVDSADAAIPAVLEPMPPPLVNEEGFAFYTPARHSAPTATMNAAADAIV
DISAELAERRTRWRYLAEKADWLLGSTSHARDDAAAARKCQPQDPAVDRY
EAASYYIKWVRGGRVRAGSHNSSGGWADFAHCMLVPAPWEGALPPGPLSR
DAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPM
GWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFF
LFEIALLFMIRDRCSGRPFYHTNVWATMRLACVWLQLVDILIFLWGRYTY
EGTALSMEFFRRARAGCSRAPRLADAPALRSARRSGQQRSGAAAKCALKQ
ERVAAVRKRGQYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAA
FVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFV
LDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRL
VIRQRARALSMAFDCLRGANIGSSDGSSGGGGAAEDGGGKSPVPNGGGKG
GGGSTGHARGGSGSSGVPAVVGGAEVTADDWVALMAHLRPDLSGRGCRLL
FNTVGEGCGGGDLGPTRCDRAQFFELCALVQAHIEGGAEDWRAPLRGSAS
SMPQPQRRNGGGGGGGAEGGCCAALARRCGSTVRALRRRVRRYVRWTVAT
PFNNWWGLTHADDIHVRRAVNNVASVVHAVLLAVQGTVLPGEQDPAGNTA
FEGRELHMALLEYTLVVYFWADAAAVLWAGGAARALSDAYWCLGVALNAV
ATAWVAGAWPEGRDRAYYVAMAPRALGLWRVVHQLQGTRSDVAERLARVL
PTLLRSTSVLLAFVYSSALCAYGMLWHT* back to topmRNA from alignment at Contig_178:125611..131994- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_14265 ID=mRNA_14265|Name=jgi.p|Trimin1|353688|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6384bp|location=Sequence derived from alignment at Contig_178:125611..131994- (Tribonema minus UTEX_B_3156 )
ATGGCTGTGGATTCAGCTGATGCTGCGATCCCGGCTGTCCTGGAGCCCAT
GCCACCGCCCCTAGTCAATGAAGAAGGTGAGACACGCACTTGAACATCAA
GGCTCGAACAGCGAGCTCAGCGCGCACCGCCCGCCAATTTGCCGCAAATC
ATCTGCAGTCCGATAGACTGTCATTTACCATTTGGTTCGCATGCACAAAC
TGACATATTCCTACCAGCACACCAGCCCACAACATACTTTTTGGTGCTGC
AGTTCAACTTTGTTTTCGTGCACAGTATCCTCTCCTCGGCGTACACACGC
TTCCAAAGCAGGGAGATCTTGCGTTTCTCGCTGATGCATCTTGCTAAGCG
GCAATTCTTTGCTGTCCGGGGGCACTGTATGGATCCTTGGAGTCTTTTGC
TCAGAATAAACCATCCGCACTGTCGTAAAGCGACTGAAAGGCTGCTGGCG
CAGCTCGTATGCGTGCTCTGCACACCACTGCCCAATTCATGCCTGCTGCA
GCCAGGCCTGAACTGACAATAACCAAATTGTCTTCACGAGCGCTTCAAAA
AAATGGCCCACAAGCGCAGCGACGAAATAGGCTCGACTTTCACTCGCGTG
GAGATTCCGAAGCAGCTGTGGCATGCACTGCCCCTGGCAACCCATACTGA
AACAGACCAGCGCGTTCAGCCAGCTCTGCTACCAGCGCAGACATGCCAGC
GCCCCTGCATGACAACTTGCACCGCTTCAAAACCCGGCGCCGCCGCGCCT
GCCCCCCGTGCCTGCCAGGCTTCGCCTTCTACACGCCCGCGCGGCACTCC
GCGCCGACCGCCACCATGAACGCCGCCGCGGACGCGATCGTCGACATCAG
CGCGGAGCTGGCGGAGCGGCGCACGCGCTGGCGCTACCTGGCGGAGAAGG
CGGACTGGCTGCTGGGCAGCACGTCGCACGCGCGCGACGACGCCGCCGCG
GCGCGCAAGTGCCAGCCGCAGGACCCGGCCGTGGACCGCTACGAGGCCGC
CAGCTACTACATCAAGTGGGTGCGCGGCGGCCGCGTGCGCGGTCTGGCTG
ACTGTGTCCGCCTGTAACACTTAGTGTCCTGTTGCTAGTTCATGAGGGGG
GGGGAGGGGGAGGGGGCGGGCGATGCGGAGATGTGACTGCTGCGCGATGC
ACCCGACAGCGTGCCGCGGCTATGGAGCGCAGCTGGCAGCCACAATAGCA
GTGGCGGCTGGGCCGACTTCGCGCACTGCATGCTGGTTCCAGCACCATGG
GAGGGCGCGCTGCCCCCAGGTCCATTGTCGAGGTGAGGTCCTGAGCACCA
TCACACACCGACGACCCCCGCTGCTGCTTTCCTTGCTTGCGCTGGCGCAG
GGACGCCATGCACGGCCGCAAGATCATCGCGCACATCCACACGCAGCGGC
AGCTCAGCGCCGTGCGGCTGGCGCGCGCGCGCCCGATCATACTCATCTTC
AACGTCCTGTGCTTCTTCCAGGTGAGCACGCGTGCGCGGCAACTTAAGAG
TGTGCAGTGTCGCTCGTCATCGCTGTTGAAGCGTGTGGCGAGGCTGGTAC
TCTGTCGCGCTGTCGCGACCACCGCATGATGCACCTGATCTGTGACTGTC
GCACATGAGAGCAGTGTCCCCGCGAGACGAGCGCATGACAGCGGCTGCAG
CGCATCGCGCGTCCTGCTCAGGTCAGCAGCTTTTTGCAGCGCCAGGGAAC
GCTGCGCATGCATGCGCCAATGCCCTCTGCCCATGCCCTTCGCGCGAGCT
GCCGCAGCTGCTGCTGCCGCTCATCGAGATGCCAATGGGGTGGGAGTGCA
GGGAGGGCGCGGTGAGGTCCATACAGGATGGCGGGGTGCTGTGTGAGCTG
GACGGGGACTCGCTGGCGTGGTTTGTCGGGTGGCGGCCGACGATGCTGGG
GTCCTCCTGGCTGGAGCTGCCCATTTGCGCATTTTTCCTCTTTGAGGTGA
GCTGCGCTTGCCGTCCGAGCCATGGTGTGGTGCGTAAGCAAGCTGGCGCG
CATGAAGATTCTGTGCACTCCATGCACCGTGTGGCAGTGGCCAGCGCACC
CTGTCTGTTGCTATTCATGTTGACAGTGATGCATGTACCTATCTCAAGCA
GCAGTAGTACGCTGCAGCGCAGCAATCAGGGCTGTACGCGTGCACTGGTA
TGGCAGCAGCATCAAACTTGCGTGCATGATATGGTACCTGAGCACGGACG
GCTGCCGATGTTTCTTCACCTGTGACGCTCCCGTAGCTGAGATTTTGTGC
TGGAACTGCTAGCGAGGCAAGTGGCATTGCTCTGTCGGGTGTCTCCATCA
ACGAAATCATCATTGAAGTCACAGTCAACTGTGAGACTGGAAACCTTGTG
CTCTGACGAGGCTACACCTTGCACGCCATGCAAGCCTTCACTGCCCTGAA
GCGCATGACCCTGAGTGGAAAACTTGCACCTTGGGCTGCGGCGCCGCCGC
GGCCATTGTTTCACCTCGCGTGCGGACATGCCGCTGATGGCCTGCTGCTG
CCTGCCGCTGCACGCTTCGCCCCCCCCTTCCGCCGCGCAGATTGCACTAC
TCTTTATGATTCGGGACAGGTGAGCCGCGGAGTAAAGCCGCCCGCTGCAC
GCACTGTTGGGTGGACTTGGGTTCGCGTCTGGCCATGCTACGGGAGTCTT
ACGGTGTCCCTAGGCAGCAAGTTCTATGCGCAGCGTCACCAGATGCTGCT
GATTGTGCACAGTTCTACATGGGGGTTGTGCGCGTCCAGCTCGGTTTTCA
TGTAGTTGCCATCATCAGCTGAGCCAGTCGACGCAACATCAACGAGAACA
GGGTATCGTTGGGGTGGCCATACGCTAGCAGTCACCGTTCATTGCGCGGC
GAAGGCGCACAGCGAGATTGAGCGGCGCAGCTGCTCTCAACTGGTGTCCT
GAGTAACTGGCAAGCGACGTTTTGGATTTAAGCCACAGATTCACACTCGC
GAATGCGTGTCACTGCGCTGCCCGAGTGGGCGGCGCGTGCACACGCCAGG
ACTCTGCCATTGCGGCGTTGCGGCACACGTGAGCAGATACCGGAATATTC
GCCCGTGACTCCAAGAGCAACGACTCGAAGGAGCCGGCTCGCTGTGTAGC
AGCAATCTTGCGGCCGTGCGGCGTCACGCTCTATGCCCATCGCGCCGCCG
CCCCCCCTCCCCCCCGCCATCCTGCGCCGCCGCTGCCGCAGGTGCTCCGG
CCGGCCGTTCTACCACACCAACGTGTGGGCCACGATGCGCCTCGCGTGCG
TGTGGCTGCAGCTCGTCGACATCCTCATCTTCCTCTGGGGGCGCTACACG
TACGAGGGCACCGCGCTGTCCATGGAGTTCTTCAGGTGAATGGAGCTCTT
CGGGTGACCGCGCGCGCGTGATGCGGCGCCAGGCAGGGGCGTCGATGCCT
GCGCGCGAATGCAAGGCGCGCGCGCGCTGGCTGCTCGCGCGCGCCGCGCC
TTGCCGATGCCCCCGCGCTGCGCAGCGCGAGGCGCAGCGGACAGCAGCGC
TCAGGAGCTGCTGCCAAATGCGCGTTGAAGCAGGAGCGCGTCGCCGCTGT
GCGGAAACGCGGGCAGTGCTGCGCTCGCGGCATGTGCTGAGCGCCGACGG
AGGTTTGACACTGACAGCGGGGGCGCACAGCACTTGAACCTGATCGCCAA
TTCGCATTGGGCTGACAATGCACTGTCACCGCGCCGCTGCTGCTGCTGCT
GCTGCTGCCCCCCCGCGCACGCGCAGGTACAGCCGCGCCCTCACCTTCTT
CATCTACATCACCAACCACCAGTACCTGCGCCTCTTCGTGAAGGGCCTGT
GGCACGTGCTGCCGCGCCTGATGCCGGTCGCCACCGCCGCGGCGTTCGTC
GTCTGCCTCTACGGCTACGTGGGGTACCTGGCCTTCAACCACACGCGCGC
GCAGCCCGACGCTTTGCGTGAGCTGGACCTCTTCCGCACGCTGCCCGGCG
CGATGCTCACGGCGCTGCGCATGTTCACGTCCGTCGTCTTCGTGCTCGAC
CTCGAGTTCCTGTACCGGCGCAGCCCGGGCATCCGCATCTACTGCGCGAC
GTGAGTGCAGCTGGGGTTAGGGTTAGGAGTGCGTACGTGTGTGGTGTCCC
CTGCGTCGCGGCGCGTTGTATGAAAGGTTTGGCTCTGACAGCGTCGTGCG
CGCGTGTGCACGCCATATTGATTGTCGTCGCCTGGCCTCGAGGTTCTGTG
CCGATGCAGCTCAGACTTGCGCTGCGCGGCGCGTGTAGTGCCGGCGTCGC
TTGCTGGATGCTTTCAACACAGTGACATATGCGCGCGCGCGTGTGCTGCC
CAGGCCTCATCCACGCGGAACAGTAGCGCTGGTGGGCCGCCCTGTCAGTG
TGCCATGAGCACGCAGCATCACTTGCCGCAGCGCACCTCCTCACAATCGC
CCCCCCCCCCCCCCCCCAACAGCTACGCGCTGCTCGCGGCGGTGCTGCTG
TGCGCGCTCGTGACCGCCGTCGCCAACAAGCTCTTCCAGCAGCAGTCGCT
CGACGCGTACCGCCTCGTCATCCGGCAGCGCGCGCGCGCCCTGTCCATGG
CCTTTGACTGCCTGCGCGGCGCGAACATCGGCAGCAGCGACGGCAGCAGC
GGCGGCGGCGGCGCCGCCGAGGACGGTGGCGGCAAAAGCCCCGTGCCCAA
CGGCGGCGGCAAGGGCGGCGGCGGCAGCACCGGCCACGCCCGCGGCGGCA
GCGGCAGCAGCGGCGTGCCCGCTGTCGTCGGCGGCGCCGAAGTGACCGCG
GATGACTGGGTCGCGCTGATGGCGCACCTGCGGCCGGACCTCTCCGGGCG
CGGCTGCCGGCTGCTGTTCAACACGGTGGGCGAGGGCTGCGGCGGCGGCG
ACTTGGGGCCCACGCGCTGCGACCGCGCGCAGTTCTTTGAGCTGTGCGCG
CTGGTGCAGGTGAGCGGCGCGGCTGGGCGTGCTCGCGGCGCTCTACGAGC
GGTTCTGCGTTGGCTGGTTGCAGTTCCAGCACGCATGCGCTGTCCTGCTG
TTGCTGTGTGGTCGCTAGCGCTGAGCGATGAGTCGCGTGCGCTGTCGTTG
CTGCGAAGTGCTCCACGCCGCGCCGTGCCGCGACCGTGCTCATGCGCAAT
ACGACTGCCGCCGCCACCGCTGCCGCAGGCGCACATCGAAGGCGGCGCCG
AGGACTGGCGCGCGCCGCTGCGCGGGTCGGCCAGCAGCATGCCGCAGCCG
CAGCGGCGCAACGGCGGTGGCGGCGGCGGCGGCGCCGAGGGCGGCTGCTG
CGCCGCACTGGCGCGCCGCTGCGGCAGCACCGTGCGCGCGCTGCGGCGGC
GCGTGCGGCGCTACGTGCGGTGGACGGTGGCGACGCCGTTCAACAACTGG
TGGGGGCTCACGCACGCGGACGACATACACGTGCGCCGCGCCGTCAACAA
CGTGGCAAGCGTCGTGCACGGTGAGCAGTGCATGCCGCGCAGAAGTGCCG
CAGGCCGCTGCGACGCACGGACCCGGCTGCCGTCTTTGTGACCCTCGTTC
AGCAGCACTTTGAAACTGCGCACTCGTGCACTGCAGCGGCATCTCGCCCT
CACGGCGTGTCTGGAACGACGGATGCATAGCGGCACCGCCGCTGCGGATG
CGCAACGCTACATGGCGAGGGCCGCTGCATCTTGCCGCGCTTTCCCATCA
GCTCCTCAAACAAAAGGCAGAGCTTGCATCCGAGCGCATGCTGCACTGCT
CGGATGTCCCGGCTGCTGTGCTCTGCTGGTCGCTGCCGCTGCCGCCCCCG
ACCACAAGTCACTGCTTGCACAGCAGCGCCGAGCTGATCTGCGGCGTCGC
TGCCGGCCTCAAGGGGAGCTTGCATTCACTGCATGAGCACGACTCCCGCA
CTTGTTCCGTCAAGACACGGCAGCATGTGACACCCATGATACATCAGGGT
CTGTGACCCCCCCCCCCCCCCCGCTCTCCCAGCCGTCCTGCTGGCCGTCC
AGGGCACGGTCCTCCCCGGCGAGCAGGACCCCGCGGGCAACACGGCCTTC
GAGGGGCGCGAGCTCCACATGGCGCTGCTCGAGTACACCCTCGTCGTGTA
CTTCTGGGCGGACGCGGCGGCGGTGCTCTGGGCCGGCGGCGCGGCGCGCG
CGCTGTCGGACGCGTACTGGTGCCTCGGCGTCGCGCTCAACGCCGTCGCG
ACGGCGTGGGTCGCGGGCGCGTGGCCCGAGGGGCGTGACCGCGCGTACTA
CGTGGCCATGGCGCCGCGCGCGCTCGGGCTGTGGCGCGTCGTCCACCAGC
TGCAGGGGACGCGCTCCGACGTCGCGGAGCGCCTCGCGCGCGTGCTGCCG
ACGCTGCTGCGCTCGACGTCCGTCCTGCTCGCGTTCGTGTACTCGTCCGC
GCTCTGCGCGTACGGCATGCTGTGGCACACGTGA back to topCoding sequence (CDS) from alignment at Contig_178:125611..131994- >mRNA_14265 ID=mRNA_14265|Name=jgi.p|Trimin1|353688|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2637bp|location=Sequence derived from alignment at Contig_178:125611..131994- (Tribonema minus UTEX_B_3156 )
ATGGCTGTGGATTCAGCTGATGCTGCGATCCCGGCTGTCCTGGAGCCCAT
GCCACCGCCCCTAGTCAATGAAGAAGGCTTCGCCTTCTACACGCCCGCGC
GGCACTCCGCGCCGACCGCCACCATGAACGCCGCCGCGGACGCGATCGTC
GACATCAGCGCGGAGCTGGCGGAGCGGCGCACGCGCTGGCGCTACCTGGC
GGAGAAGGCGGACTGGCTGCTGGGCAGCACGTCGCACGCGCGCGACGACG
CCGCCGCGGCGCGCAAGTGCCAGCCGCAGGACCCGGCCGTGGACCGCTAC
GAGGCCGCCAGCTACTACATCAAGTGGGTGCGCGGCGGCCGCGTGCGCGC
TGGCAGCCACAATAGCAGTGGCGGCTGGGCCGACTTCGCGCACTGCATGC
TGGTTCCAGCACCATGGGAGGGCGCGCTGCCCCCAGGTCCATTGTCGAGG
GACGCCATGCACGGCCGCAAGATCATCGCGCACATCCACACGCAGCGGCA
GCTCAGCGCCGTGCGGCTGGCGCGCGCGCGCCCGATCATACTCATCTTCA
ACGTCCTGTGCTTCTTCCAGCTGCTGCTGCCGCTCATCGAGATGCCAATG
GGGTGGGAGTGCAGGGAGGGCGCGGTGAGGTCCATACAGGATGGCGGGGT
GCTGTGTGAGCTGGACGGGGACTCGCTGGCGTGGTTTGTCGGGTGGCGGC
CGACGATGCTGGGGTCCTCCTGGCTGGAGCTGCCCATTTGCGCATTTTTC
CTCTTTGAGATTGCACTACTCTTTATGATTCGGGACAGGTGCTCCGGCCG
GCCGTTCTACCACACCAACGTGTGGGCCACGATGCGCCTCGCGTGCGTGT
GGCTGCAGCTCGTCGACATCCTCATCTTCCTCTGGGGGCGCTACACGTAC
GAGGGCACCGCGCTGTCCATGGAGTTCTTCAGGCGCGCGCGCGCTGGCTG
CTCGCGCGCGCCGCGCCTTGCCGATGCCCCCGCGCTGCGCAGCGCGAGGC
GCAGCGGACAGCAGCGCTCAGGAGCTGCTGCCAAATGCGCGTTGAAGCAG
GAGCGCGTCGCCGCTGTGCGGAAACGCGGGCAGTACAGCCGCGCCCTCAC
CTTCTTCATCTACATCACCAACCACCAGTACCTGCGCCTCTTCGTGAAGG
GCCTGTGGCACGTGCTGCCGCGCCTGATGCCGGTCGCCACCGCCGCGGCG
TTCGTCGTCTGCCTCTACGGCTACGTGGGGTACCTGGCCTTCAACCACAC
GCGCGCGCAGCCCGACGCTTTGCGTGAGCTGGACCTCTTCCGCACGCTGC
CCGGCGCGATGCTCACGGCGCTGCGCATGTTCACGTCCGTCGTCTTCGTG
CTCGACCTCGAGTTCCTGTACCGGCGCAGCCCGGGCATCCGCATCTACTG
CGCGACCTACGCGCTGCTCGCGGCGGTGCTGCTGTGCGCGCTCGTGACCG
CCGTCGCCAACAAGCTCTTCCAGCAGCAGTCGCTCGACGCGTACCGCCTC
GTCATCCGGCAGCGCGCGCGCGCCCTGTCCATGGCCTTTGACTGCCTGCG
CGGCGCGAACATCGGCAGCAGCGACGGCAGCAGCGGCGGCGGCGGCGCCG
CCGAGGACGGTGGCGGCAAAAGCCCCGTGCCCAACGGCGGCGGCAAGGGC
GGCGGCGGCAGCACCGGCCACGCCCGCGGCGGCAGCGGCAGCAGCGGCGT
GCCCGCTGTCGTCGGCGGCGCCGAAGTGACCGCGGATGACTGGGTCGCGC
TGATGGCGCACCTGCGGCCGGACCTCTCCGGGCGCGGCTGCCGGCTGCTG
TTCAACACGGTGGGCGAGGGCTGCGGCGGCGGCGACTTGGGGCCCACGCG
CTGCGACCGCGCGCAGTTCTTTGAGCTGTGCGCGCTGGTGCAGGCGCACA
TCGAAGGCGGCGCCGAGGACTGGCGCGCGCCGCTGCGCGGGTCGGCCAGC
AGCATGCCGCAGCCGCAGCGGCGCAACGGCGGTGGCGGCGGCGGCGGCGC
CGAGGGCGGCTGCTGCGCCGCACTGGCGCGCCGCTGCGGCAGCACCGTGC
GCGCGCTGCGGCGGCGCGTGCGGCGCTACGTGCGGTGGACGGTGGCGACG
CCGTTCAACAACTGGTGGGGGCTCACGCACGCGGACGACATACACGTGCG
CCGCGCCGTCAACAACGTGGCAAGCGTCGTGCACGCCGTCCTGCTGGCCG
TCCAGGGCACGGTCCTCCCCGGCGAGCAGGACCCCGCGGGCAACACGGCC
TTCGAGGGGCGCGAGCTCCACATGGCGCTGCTCGAGTACACCCTCGTCGT
GTACTTCTGGGCGGACGCGGCGGCGGTGCTCTGGGCCGGCGGCGCGGCGC
GCGCGCTGTCGGACGCGTACTGGTGCCTCGGCGTCGCGCTCAACGCCGTC
GCGACGGCGTGGGTCGCGGGCGCGTGGCCCGAGGGGCGTGACCGCGCGTA
CTACGTGGCCATGGCGCCGCGCGCGCTCGGGCTGTGGCGCGTCGTCCACC
AGCTGCAGGGGACGCGCTCCGACGTCGCGGAGCGCCTCGCGCGCGTGCTG
CCGACGCTGCTGCGCTCGACGTCCGTCCTGCTCGCGTTCGTGTACTCGTC
CGCGCTCTGCGCGTACGGCATGCTGTGGCACACGTGA back to top
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