Trimin1|353688|estExt_Genemark1.C_Ctg_1780021 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353688
Unique NameTrimin1|353688|estExt_Genemark1.C_Ctg_1780021
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length879
Homology
BLAST of jgi.p|Trimin1|353688 vs. uniprot
Match: A0A836CJB1_9STRA (Ion_trans domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJB1_9STRA)

HSP 1 Score: 1646 bits (4262), Expect = 0.000e+0
Identity = 878/878 (100.00%), Postives = 878/878 (100.00%), Query Frame = 0
Query:    1 MAVDSADAAIPAVLEPMPPPLVNEEGFAFYTPARHSAPTATMNAAADAIVDISAELAERRTRWRYLAEKADWLLGSTSHARDDAAAARKCQPQDPAVDRYEAASYYIKWVRGGRVRAGSHNSSGGWADFAHCMLVPAPWEGALPPGPLSRDAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFFLFEIALLFMIRDRCSGRPFYHTNVWATMRLACVWLQLVDILIFLWGRYTYEGTALSMEFFRRARAGCSRAPRLADAPALRSARRSGQQRSGAAAKCALKQERVAAVRKRGQYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAAFVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFVLDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRLVIRQRARALSMAFDCLRGANIGSSDGSXXXXXXXXXXXXXXXXXXXXXXXXXXSTGHARGGSGSSGVPAVVGGAEVTADDWVALMAHLRPDLSGRGCRLLFNTVGEGCGGGDLGPTRCDRAQFFELCALVQAHIEGGAEDWRAPLRGSASSMPQPQRXXXXXXXXXXXXXXXXALARRCGSTVRALRRRVRRYVRWTVATPFNNWWGLTHADDIHVRRAVNNVASVVHAVLLAVQGTVLPGEQDPAGNTAFEGRELHMALLEYTLVVYFWADAAAVLWAGGAARALSDAYWCLGVALNAVATAWVAGAWPEGRDRAYYVAMAPRALGLWRVVHQLQGTRSDVAERLARVLPTLLRSTSVLLAFVYSSALCAYGMLWHT 878
            MAVDSADAAIPAVLEPMPPPLVNEEGFAFYTPARHSAPTATMNAAADAIVDISAELAERRTRWRYLAEKADWLLGSTSHARDDAAAARKCQPQDPAVDRYEAASYYIKWVRGGRVRAGSHNSSGGWADFAHCMLVPAPWEGALPPGPLSRDAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFFLFEIALLFMIRDRCSGRPFYHTNVWATMRLACVWLQLVDILIFLWGRYTYEGTALSMEFFRRARAGCSRAPRLADAPALRSARRSGQQRSGAAAKCALKQERVAAVRKRGQYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAAFVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFVLDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRLVIRQRARALSMAFDCLRGANIGSSDGSXXXXXXXXXXXXXXXXXXXXXXXXXXSTGHARGGSGSSGVPAVVGGAEVTADDWVALMAHLRPDLSGRGCRLLFNTVGEGCGGGDLGPTRCDRAQFFELCALVQAHIEGGAEDWRAPLRGSASSMPQPQRXXXXXXXXXXXXXXXXALARRCGSTVRALRRRVRRYVRWTVATPFNNWWGLTHADDIHVRRAVNNVASVVHAVLLAVQGTVLPGEQDPAGNTAFEGRELHMALLEYTLVVYFWADAAAVLWAGGAARALSDAYWCLGVALNAVATAWVAGAWPEGRDRAYYVAMAPRALGLWRVVHQLQGTRSDVAERLARVLPTLLRSTSVLLAFVYSSALCAYGMLWHT
Sbjct:    1 MAVDSADAAIPAVLEPMPPPLVNEEGFAFYTPARHSAPTATMNAAADAIVDISAELAERRTRWRYLAEKADWLLGSTSHARDDAAAARKCQPQDPAVDRYEAASYYIKWVRGGRVRAGSHNSSGGWADFAHCMLVPAPWEGALPPGPLSRDAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFFLFEIALLFMIRDRCSGRPFYHTNVWATMRLACVWLQLVDILIFLWGRYTYEGTALSMEFFRRARAGCSRAPRLADAPALRSARRSGQQRSGAAAKCALKQERVAAVRKRGQYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAAFVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFVLDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRLVIRQRARALSMAFDCLRGANIGSSDGSXXXXXXXXXXXXXXXXXXXXXXXXXXSTGHARGGSGSSGVPAVVGGAEVTADDWVALMAHLRPDLSGRGCRLLFNTVGEGCGGGDLGPTRCDRAQFFELCALVQAHIEGGAEDWRAPLRGSASSMPQPQRXXXXXXXXXXXXXXXXALARRCGSTVRALRRRVRRYVRWTVATPFNNWWGLTHADDIHVRRAVNNVASVVHAVLLAVQGTVLPGEQDPAGNTAFEGRELHMALLEYTLVVYFWADAAAVLWAGGAARALSDAYWCLGVALNAVATAWVAGAWPEGRDRAYYVAMAPRALGLWRVVHQLQGTRSDVAERLARVLPTLLRSTSVLLAFVYSSALCAYGMLWHT 878          
BLAST of jgi.p|Trimin1|353688 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 7.140e-45
Identity = 213/873 (24.40%), Postives = 331/873 (37.92%), Query Frame = 0
Query:   45 AADAIVDISAELAERRTRWRYLAEKADWLLGSTSH-ARDDAAAARKCQPQ-DPAVDRYEAASYYIKWVRGGRVRAGSHNSSGGWADFAHCMLVPAPWEGALPPGPLSRDAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFFLFEIALLFMIR-------------DRCSGRPF------------YHTNV-----WATMRLACVWLQLVDILIFLWGRYTYEGTALSMEFFRRARAGCSRAPRLADAPALRSARRSGQQRSGAAAKCALKQERVAAVRKRGQYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAAFVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFVLDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRLVIRQRARALSMAFDCLRGANIGSSDGSXXXXXXXXXXXXXXXXXXXXXXXXXXSTGHARGGSGSSGVPAVVGGAEVTADDWVALMAHLRPDLSGRGCRLLFNTVGEGCG-----GGDLGPTRCDRAQFFELCALVQAHIEGGAEDWRAPLRGSASSMPQPQRXXXXXXXXXXXXXXXXALARRCGSTVRALRRRVRRYVRWTVATPFNNWWGLTHADDIHVRRAVNNVASVVHAVLLAVQGTVLPGEQDPAGNTAFEGRELHMALLEYTLVVYFWADAAAVLWAGGAARALSDAYWCLGVALNAVATAWVAGAWPEGRD--RAYYVAMAPRALGLWRVVHQLQGTRSDVAERLARVLPTLLRSTSVLLAFVYSSALCAYGMLWHT 878
            A++    IS +L E+  RW+ L  +   L GS +  A +D +   + QP     VD++E AS Y+K                                          DA+ GR+    +H Q  L A++L R +    + N+     L+LP++E+     C    ++ I +      LD +SL    GWRPT+LGS WLE  +C  +++++  + +               DR   R              +H+++     W   R   V L    +L  ++  Y ++ T                                                         ++SR    F++I+   YL+ FV G+  VLPR++PV    +FVV  Y ++GY+ +         L++LDLF     + +T LRMFTS+ F+LD+E +Y  + GIR+   +Y ++  + L ALV AVAN+ FQ      Y  V  QR  AL+ AF  LR    G+                                                    V  +DWV LMA LRPD +      LF+   +        GG+    R  +  FF LCAL  A      +D                                 A +RR GS  + +R+R+   + W++              +  + R V NVA VV    + ++G       DP      EGR      L   L+ YF   A+  +   GA   +      LG+ LN +   +  G W +G      Y +  A R + LW V+H+L  T S+VA RL  V P +LR++ VL +  YS ++ A+ M   T
Sbjct:   81 ASEVATAISRDLVEKAERWKLLGGEP--LTGSPARFAHEDRSQLPEVQPLLAHDVDKHEVASIYVK------------------------------------------DALAGRESPTCMHNQNSLRALKLVRNKAWNQLLNICTIVHLMLPIVEIQRCLPCM--GMQKIPES-----LDSNSL--HTGWRPTLLGSMWLECLLCLLYVYDLYKVALASNHVHKRSHRGGGSDRDGDRDIGVSKGEGAKASSWHSSLARLPPWQLARTCMVALLAFGLLTNIFAHYAFKITW-------------------------------------------------------HRWSRVTLPFLFISRRTYLKHFVGGVIRVLPRMLPVVFLMSFVVFFYAFIGYILYRDEPRTSSLLQDLDLFSQPSSSAMTFLRMFTSIPFMLDVEHIYAGTKGIRVMGLSYGVIMVIFLGALVPAVANRNFQHH----YNWVKEQRRLALTRAFMLLRREEDGT----------------------------------------------------VGREDWVRLMACLRPDCNAGHTSALFDAAKKADDETVSFGGEDDRNRLSKGGFFMLCALGTASFSRARKD--------------------------------DAGSRRSGSKWKRIRQRLDAALSWSMP-----------GSNFPLSRQVLNVAVVVQGYQIVLEG------DDP------EGRPTWAYPLGGFLIAYFCVQASLRMIVDGARLYIMQWRHALGMCLNLIGVTYYMGLWFDGTGWHSFYKILQASRVVILWNVLHRLGSTSSEVARRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCAT 734          
BLAST of jgi.p|Trimin1|353688 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.420e-38
Identity = 148/525 (28.19%), Postives = 222/525 (42.29%), Query Frame = 0
Query:  361 QYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAAFVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFVLDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRLVIRQRARALSMAFDCLRGANIGSSDGSXXXXXXXXXXXXXXXXXXXXXXXXXXSTGHARGGSGSSGVPAVVGGAEVTADDWVALMAHLRPDLSGRGCRLLFNTVGEGCG-----GGDLGPTRCDRAQFFELCALVQAHIEGGAEDWRAPLRGSASSMPQPQRXXXXXXXXXXXXXXXXALARRCGSTVRALRRRVRRYVRWTVATPFNNWWGLTHADDIHVRRAVNNVASVVHAVLLAVQGTVLPGEQDPAGNTAFEGRELHMALLEYTLVVYFWADAAAVLWAGGAARALSDAYWCLGVALNAVATAWVAGAWPEGRD--RAYYVAMAPRALGLWRVVHQLQGTRSDVAERLARVLPTLLRSTSVLLAFVYSSALCAYGMLWHT 878
            ++SR    F++I+   YL+ FV G+  VLPR++PVA   +FVV  Y ++GY+ +         L++LDLF     + +T LR+FTS+ F+LD+E +Y  + GIR+   +Y ++  + L ALV AVAN+ FQ QS ++Y  V  QR  AL+ AF  LR     +                                                    V  +DWV LMA LRPD +      LF+   +        GG+    R  +  FF LCAL  A      +D                                 A +RR GS  + +R+R+   + W++              +  + R V NVA VV    + ++G       DP      E R      L   L+ YF   A+  +   GA   +      LG+ LN +  A+  G W +G      Y +  A R + LW V+H+L  T S+VA RL  V P +LR++ VL +  YS ++ A+ M   T
Sbjct:  184 RWSRVTLPFLFISRRTYLKHFVGGVIRVLPRMLPVAFLMSFVVFFYAFIGYVLYRDEPRSSSLLQDLDLFSQPSSSAMTFLRIFTSIPFMLDVEHIYAGTKGIRVMGLSYGVIMVIFLGALVPAVANRNFQYQSKESYNWVKEQRKLALTRAFMLLRREEDRT----------------------------------------------------VGREDWVRLMACLRPDCNAGHTSALFDAAKKAEDETVSLGGEDDRNRLSKGGFFMLCALGTASFSRARKD--------------------------------DAGSRRSGSKWKRIRQRLDAALSWSMP-----------GSNFPLSRQVLNVAVVVQGYQIVLEG------DDP------ERRPTWAYPLGGFLIAYFCVQASLWMIVDGARLYIRQWRHALGMCLNLIGVAYYMGLWFDGTGWHSFYQILQASRVVILWNVLHRLGSTSSEVATRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCAT 601          
BLAST of jgi.p|Trimin1|353688 vs. uniprot
Match: D7FGS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS0_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 5.180e-5
Identity = 34/101 (33.66%), Postives = 52/101 (51.49%), Query Frame = 0
Query:  150 RDAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFF 250
            RDA+ GR   A IH +R + A++  R      + N+     L+LP++E+     C     RS         L+ ++L  F+GWRPT LGS W+E  +C F+
Sbjct:  128 RDALAGRDSSACIHNERSIRALKWFRNDAWNSLLNICTLVHLILPMVEIQRCLSCMGPHRRS-------ASLEDNTL--FLGWRPTSLGSLWIECVLCVFY 219          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353688 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CJB1_9STRA0.000e+0100.00Ion_trans domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5L0T6_9PHAE7.140e-4524.40Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FR41_ECTSI1.420e-3828.19Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
D7FGS0_ECTSI5.180e-533.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 240..494
e-value: 2.8E-7
score: 30.0
NoneNo IPR availableGENE3D1.10.287.70coord: 381..512
e-value: 1.2E-5
score: 26.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 527..566
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 641..663

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_178contigContig_178:125611..131994 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353688mRNA_14265Tribonema minus UTEX_B_3156 mRNAContig_178 125611..131994 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353688|estExt_Genemark1.C_Ctg_1780021 ID=Trimin1|353688|estExt_Genemark1.C_Ctg_1780021|Name=jgi.p|Trimin1|353688|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=879bp
MAVDSADAAIPAVLEPMPPPLVNEEGFAFYTPARHSAPTATMNAAADAIV
DISAELAERRTRWRYLAEKADWLLGSTSHARDDAAAARKCQPQDPAVDRY
EAASYYIKWVRGGRVRAGSHNSSGGWADFAHCMLVPAPWEGALPPGPLSR
DAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPM
GWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFF
LFEIALLFMIRDRCSGRPFYHTNVWATMRLACVWLQLVDILIFLWGRYTY
EGTALSMEFFRRARAGCSRAPRLADAPALRSARRSGQQRSGAAAKCALKQ
ERVAAVRKRGQYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAA
FVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFV
LDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRL
VIRQRARALSMAFDCLRGANIGSSDGSSGGGGAAEDGGGKSPVPNGGGKG
GGGSTGHARGGSGSSGVPAVVGGAEVTADDWVALMAHLRPDLSGRGCRLL
FNTVGEGCGGGDLGPTRCDRAQFFELCALVQAHIEGGAEDWRAPLRGSAS
SMPQPQRRNGGGGGGGAEGGCCAALARRCGSTVRALRRRVRRYVRWTVAT
PFNNWWGLTHADDIHVRRAVNNVASVVHAVLLAVQGTVLPGEQDPAGNTA
FEGRELHMALLEYTLVVYFWADAAAVLWAGGAARALSDAYWCLGVALNAV
ATAWVAGAWPEGRDRAYYVAMAPRALGLWRVVHQLQGTRSDVAERLARVL
PTLLRSTSVLLAFVYSSALCAYGMLWHT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom