mRNA_14231 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351688 vs. uniprot
Match: A0A835YIB6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIB6_9STRA) HSP 1 Score: 748 bits (1930), Expect = 3.310e-267 Identity = 481/481 (100.00%), Postives = 481/481 (100.00%), Query Frame = 1
Query: 1 MRHEEIPQVRRARPGNPAGRAVKAVPGQARSARAHTEARQSFMASADGGVGASLTEPKLFFTVAGVDVGAMTQSLEQRSRCLASLVRTAETSLYLAAPMMAASHLLTVCRRSLRRVGARPAELEGDADEASADAAAALSTXXXXXXXXXXXXARLSGGGRGGRGPPAARGGAGSGVAVHGRSDARSAVLATVETALEASLLVAFVWAWSAASARVVAAVSPKMDAASADALATGLGLMAWGAVVFGSGFLSVLPGRYREKCSAAASLXXXXXXXXXXXXXXXXVQALSVDYPLQKNWYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAYWMLNALSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMLCATLASFFATDRTAFYLLAPTLVWVSLATALTVRVWQLNKGRP 1443
MRHEEIPQVRRARPGNPAGRAVKAVPGQARSARAHTEARQSFMASADGGVGASLTEPKLFFTVAGVDVGAMTQSLEQRSRCLASLVRTAETSLYLAAPMMAASHLLTVCRRSLRRVGARPAELEGDADEASADAAAALSTXXXXXXXXXXXXARLSGGGRGGRGPPAARGGAGSGVAVHGRSDARSAVLATVETALEASLLVAFVWAWSAASARVVAAVSPKMDAASADALATGLGLMAWGAVVFGSGFLSVLPGRYREKCSAAASLXXXXXXXXXXXXXXXXVQALSVDYPLQKNWYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAYWMLNALSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMLCATLASFFATDRTAFYLLAPTLVWVSLATALTVRVWQLNKGRP
Sbjct: 1 MRHEEIPQVRRARPGNPAGRAVKAVPGQARSARAHTEARQSFMASADGGVGASLTEPKLFFTVAGVDVGAMTQSLEQRSRCLASLVRTAETSLYLAAPMMAASHLLTVCRRSLRRVGARPAELEGDADEASADAAAALSTXXXXXXXXXXXXARLSGGGRGGRGPPAARGGAGSGVAVHGRSDARSAVLATVETALEASLLVAFVWAWSAASARVVAAVSPKMDAASADALATGLGLMAWGAVVFGSGFLSVLPGRYREKCSAAASLXXXXXXXXXXXXXXXXVQALSVDYPLQKNWYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAYWMLNALSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMLCATLASFFATDRTAFYLLAPTLVWVSLATALTVRVWQLNKGRP 481
BLAST of jgi.p|Trimin1|351688 vs. uniprot
Match: D8LDV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDV9_ECTSI) HSP 1 Score: 115 bits (289), Expect = 4.990e-25 Identity = 91/290 (31.38%), Postives = 124/290 (42.76%), Query Frame = 1
Query: 544 SDARSAVLATVETALEASLLVAFVWAWSAASARVVAAVSPKMDAASADALATGLGLMAWGAVVFGSGFLSVLPGRYREKCSAAASLXXXXXXXXXXXXXXXXVQALSVDYPLQKNWYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAYWMLNALSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMLCATLASFFATDRTAFYLLAPTLVWVSLATALTV 1413
SD V A VETALE+ L+V FV A +AR ++ K + AL W A VF SG + P ++ EK Q ++D P+ K+WY LRKPRW PP++VFP+ WIPLK +Q+FA +WDKL S + PV ++ V K++GD WNKV+F R +L +G V+ Y++ L A + FF A YL APT WV++AT L V
Sbjct: 91 SDTVVLVEALVETALESGLIVGFVGAAEYLAARYLS--DTKFSEVARLAL--------WTAAVFVSGAATAGPKKWLEKS-----------------------QLFNIDVPIGKDWYTNLRKPRWNPPNWVFPIMWIPLKILQVFACYEMWDKLET------RSCVALPVVVYTVYKSLGDVWNKVFFERRRLKMGTVVISLYYLT--------------------------------------------------LLAGIKVFFDVSDRAGYLFAPTAAWVTIATCLQV 291
BLAST of jgi.p|Trimin1|351688 vs. uniprot
Match: A0A7S3VHW3_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VHW3_DUNTE) HSP 1 Score: 97.8 bits (242), Expect = 5.320e-20 Identity = 57/186 (30.65%), Postives = 87/186 (46.77%), Query Frame = 1
Query: 886 NWYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAYWMLNALSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMLCATLASFFATDRTAFYLLAPTLVWVSLATALTVRVWQLNKGRP 1443
NWY+ + +P+WTPP++VFP+ WIPLKT+Q A +++W + GK+L+ P+ LF V+ +G+ WN V+F RH++ V +G +W A + T A+F R A Y++ PTL WVS+A L V + +LN G P
Sbjct: 35 NWYKTILRPKWTPPNYVFPLMWIPLKTIQSIAAAMVWRQ-GHGKELL------LPLGLFGVHLLLGNWWNVVFFSRHKMNESVKWMGLFW--------------------------------------------------ASIAGTAAAFAPISRPAAYMMLPTLAWVSVAWKLNVDIVRLNMGGP 163
BLAST of jgi.p|Trimin1|351688 vs. uniprot
Match: A8IE17_CHLRE (TspO/MBR-related protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8IE17_CHLRE) HSP 1 Score: 93.2 bits (230), Expect = 2.030e-18 Identity = 59/188 (31.38%), Postives = 86/188 (45.74%), Query Frame = 1
Query: 877 LQKNWYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAYWMLNALSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMLCATLASFFATDRTAFYLLAPTLVWVSLATALTVRVWQLNKGR 1440
+ WY+ L+KP WTPP++VFP+ WIPLKTMQ AL L+ K K + S L P+A F ++ +G+ WN V+FGR QL + + A+W + A+ A+F+ A YL+ PT VWV++AT L + Q+NKG+
Sbjct: 38 MDPTWYKSLKKPSWTPPNYVFPLVWIPLKTMQSVALWLVCSK---AKSV---SSLALPLAAFGIHMFLGNWWNVVFFGRRQLEGSLPWMYAFW--------------------------------------------------GSIAASAAAFYPISPVAAYLMLPTQVWVTIATKLNWDIVQINKGK 169
BLAST of jgi.p|Trimin1|351688 vs. uniprot
Match: A0A150H3I1_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3I1_GONPE) HSP 1 Score: 91.3 bits (225), Expect = 9.060e-18 Identity = 53/182 (29.12%), Postives = 79/182 (43.41%), Query Frame = 1
Query: 886 NWYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAYWMLNALSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMLCATLASFFATDRTAFYLLAPTLVWVSLATALTVRVWQLN 1431
WY+ L+KP+WTPP++VFP+ WIPLK MQ AL L+W K P + L P+ V+ +G+ WN V+FG+ +L + + +W A + T A+F+ A YL+ PT +WVS+AT L + +LN
Sbjct: 41 TWYKALKKPKWTPPNYVFPLVWIPLKLMQSVALWLVWTKAPSARALA------FPLTAMAVHMGLGNWWNVVFFGQRKLKESLPWMYTFW--------------------------------------------------ASIAVTAAAFYPVSPAAAYLMVPTQIWVSIATKLNWDIVKLN 166
BLAST of jgi.p|Trimin1|351688 vs. uniprot
Match: E1ZHH7_CHLVA (Uncharacterized protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZHH7_CHLVA) HSP 1 Score: 88.6 bits (218), Expect = 2.970e-17 Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 1
Query: 889 WYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAYWMLNALSV 1176
WY L KP WTPP++VFP WIPLK +Q A L+W P ++L P+ALFV + +G WN V+FGRHQ+ V + A+W A S+
Sbjct: 1 WYEALAKPAWTPPNWVFPAVWIPLKVLQSVAAWLVWRSAPTTQQLY------LPLALFVAHLFLGSWWNVVFFGRHQMQQSVKWMAAFWCSIAASI 90
BLAST of jgi.p|Trimin1|351688 vs. uniprot
Match: A0A2P6TZX4_CHLSO (Tryptophan-rich sensory n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TZX4_CHLSO) HSP 1 Score: 90.1 bits (222), Expect = 4.140e-17 Identity = 58/187 (31.02%), Postives = 85/187 (45.45%), Query Frame = 1
Query: 880 QKNWYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAYWMLNALSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMLCATLASFFATDRTAFYLLAPTLVWVSLATALTVRVWQLNKGR 1440
+K WY+ L KP WTPP++VFP+ WIPLK +Q +L L+W GK L P++LF ++ +G+ WN V+FG+H+L +GA+W A + A++A+F A L APT VWV++A L + QLNKG+
Sbjct: 51 EKGWYQKLVKPSWTPPNYVFPLVWIPLKILQSVSLWLVWRS---GKDA---GELALPLSLFGLHLFLGNWWNVVFFGQHKLEESTKWMGAFW--------------------------------------------------ASIAASIAAFAQVTPLAALLFAPTQVWVTIAAKLNWDIVQLNKGQ 181
BLAST of jgi.p|Trimin1|351688 vs. uniprot
Match: A0A5J4Y7V0_9CHLO (TspO and MBR related protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y7V0_9CHLO) HSP 1 Score: 87.4 bits (215), Expect = 2.680e-16 Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 877 LQKNWYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAYWM 1158
+ NWYR LRKP WTPP++VFP WIPLK Q A+ L+W K L P+ +F + A+G+ WN V+ GRHQ+ V +GA+W+
Sbjct: 44 MDPNWYRNLRKPEWTPPNWVFPAMWIPLKIAQSVAVWLVW------KSRADKQELALPLTVFGASLALGNWWNVVFMGRHQMKPSVKWMGAFWL 131
BLAST of jgi.p|Trimin1|351688 vs. uniprot
Match: A0A8J4G513_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4G513_9CHLO) HSP 1 Score: 85.5 bits (210), Expect = 9.340e-16 Identity = 56/182 (30.77%), Postives = 76/182 (41.76%), Query Frame = 1
Query: 886 NWYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAYWMLNALSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMLCATLASFFATDRTAFYLLAPTLVWVSLATALTVRVWQLN 1431
+WY+ L+KP WTPP++VFPM WIPLK MQ AL L+ K P L P+A F + +G+ WN V+FGR QL + + +W A + AT A+F A YL+ PT VWV++A L +LN
Sbjct: 41 SWYKSLKKPSWTPPNYVFPMVWIPLKIMQSVALWLVCTKAPTA------GALAMPLATFGAHMFLGNWWNVVFFGRRQLKGSLPWMYTFW--------------------------------------------------ASIAATSAAFHPVSHAAAYLMLPTQVWVTIAAKLNYDFVKLN 166
BLAST of jgi.p|Trimin1|351688 vs. uniprot
Match: A0A2J8AAG3_9CHLO (Protein CrtK n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AAG3_9CHLO) HSP 1 Score: 85.5 bits (210), Expect = 9.340e-16 Identity = 55/183 (30.05%), Postives = 79/183 (43.17%), Query Frame = 1
Query: 886 NWYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAYWMLNALSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMLCATLASFFATDRTAFYLLAPTLVWVSLATALTVRVWQLNK 1434
+WY+ L+KP WTPP++VFP+ WIPLK MQ AL L+ K P + L P+ + A+G+ WN V+FG+ +L + + +W A + AT A+F+ A YLL PT VWV++A L V + LNK
Sbjct: 41 SWYKSLKKPSWTPPNYVFPLVWIPLKLMQTVALWLVATKAPSA------AALGVPLFAMGAHMALGNWWNVVFFGQRKLNESLPWMYTFW--------------------------------------------------ASVAATAAAFYPISPLAAYLLLPTQVWVTIAAKLNVDIVALNK 167 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351688 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14231 ID=mRNA_14231|Name=jgi.p|Trimin1|351688|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1795bp|location=Sequence derived from alignment at Contig_97:416385..426920- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCGGCATGAGGAGATCCCGCAGGTGCGGCGGGCCAGGCCAGGAAATCCback to top protein sequence of jgi.p|Trimin1|351688 >Trimin1|351688|estExt_Genemark1.C_Ctg_970043 ID=Trimin1|351688|estExt_Genemark1.C_Ctg_970043|Name=jgi.p|Trimin1|351688|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=482bp MRHEEIPQVRRARPGNPAGRAVKAVPGQARSARAHTEARQSFMASADGGVback to top mRNA from alignment at Contig_97:416385..426920- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14231 ID=mRNA_14231|Name=jgi.p|Trimin1|351688|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=10536bp|location=Sequence derived from alignment at Contig_97:416385..426920- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_97:416385..426920- >mRNA_14231 ID=mRNA_14231|Name=jgi.p|Trimin1|351688|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1446bp|location=Sequence derived from alignment at Contig_97:416385..426920- (Tribonema minus UTEX_B_3156 )back to top |