mRNA_14203 (mRNA) Tribonema minus UTEX_B_3156
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of jgi.p|Trimin1|101142 vs. uniprot
Match: A0A836C6Z0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6Z0_9STRA) HSP 1 Score: 241 bits (616), Expect = 9.260e-78 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 3 Query: 45 MMSMKLCVVLLALLACVSAFAPVGSGRSLARSAVATRRAVRQLRMSESETEXXXXXXXXXXXXVVEDEAEAPQFGQSGFFQPNANMRYGASRDQDGKSNVWAIEPKMKVEEGENKGASLATGAIILAVAAAAVVATLANLPSPDTY 482
MMSMKLCVVLLALLACVSAFAPVGSGRSLARSAVATRRAVRQLRMSESETEXXXXXXXXXXXXVVEDEAEAPQFGQSGFFQPNANMRYGASRDQDGKSNVWAIEPKMKVEEGENKGASLATGAIILAVAAAAVVATLANLPSPDTY
Sbjct: 1 MMSMKLCVVLLALLACVSAFAPVGSGRSLARSAVATRRAVRQLRMSESETEXXXXXXXXXXXXVVEDEAEAPQFGQSGFFQPNANMRYGASRDQDGKSNVWAIEPKMKVEEGENKGASLATGAIILAVAAAAVVATLANLPSPDTY 146
BLAST of jgi.p|Trimin1|101142 vs. uniprot
Match: A0A835YKW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW3_9STRA) HSP 1 Score: 103 bits (256), Expect = 1.400e-23 Identity = 51/83 (61.45%), Postives = 61/83 (73.49%), Query Frame = 3 Query: 234 VVEDEAEAPQFGQSGFFQPNANMRYGASRDQDGKSNVWAIEPKMKVEEGENKGASLATGAIILAVAAAAVVATLANLPSPDTY 482
+VE+E E PQFG SGFFQPNANMRYGASRDQDGKSNVWAIEPKM V+ + GA L+ G +LA + V ++ LPS + Y
Sbjct: 71 LVEEEIETPQFGASGFFQPNANMRYGASRDQDGKSNVWAIEPKMAVDTDDKSGA-LSNGFAVLAASLVVVAGVISQLPSAEYY 152
BLAST of jgi.p|Trimin1|101142 vs. uniprot
Match: D7G979_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G979_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 9.620e-12 Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 3 Query: 240 EDEAEAPQFGQSGFFQPNANMRYGASRDQDGKSNVWAIEPKMKVE----EGENKGASLATGAIILAVAAAAVVATLANLPSPDT 479
+D A+ FF PN N+R G+SRDQDGKSNVWA+EPKM+VE E + L G I+ A+ A + AT+A LPSPD+
Sbjct: 84 QDPAQDATTSVKSFFAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVA-MSATIALLPSPDS 166
BLAST of jgi.p|Trimin1|101142 vs. uniprot
Match: A0A6V1QUM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QUM9_HETAK) HSP 1 Score: 66.6 bits (161), Expect = 1.060e-9 Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 3 Query: 249 AEAPQFGQSGFFQPNANMRYGASRDQDGKSNVWAIEPKMKVEEGENKGASLATGAIILAVAAAAVVATLANLPSPDT 479
+E + G F N R G SRD+DGKSNVWA+ PK +V + + SL+T A+++A + V AT++ LPSPD+
Sbjct: 100 SEPVMINEQGGFANNERSRVGVSRDEDGKSNVWAVFPKEEVVDSQADSGSLSTAAVLVAGLSVLVAATISFLPSPDS 176
BLAST of jgi.p|Trimin1|101142 vs. uniprot
Match: K0R0P9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0P9_THAOC) HSP 1 Score: 59.7 bits (143), Expect = 9.060e-8 Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 3 Query: 309 GASRDQDGKSNVWAIEPKMKVEEGENKGASLATGAIILAVA---AAAVVAT--LANLPSPD 476
G S DQDGKSNVWAIEPKM+VE NK + TG+++ AVA A AVVA L+NLP PD
Sbjct: 48 GVSMDQDGKSNVWAIEPKMEVE---NKSSEEKTGSVLAAVAGLGAFAVVAAGVLSNLPDPD 105
BLAST of jgi.p|Trimin1|101142 vs. uniprot
Match: B8LD08_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD08_THAPS) HSP 1 Score: 58.9 bits (141), Expect = 1.560e-7 Identity = 34/69 (49.28%), Postives = 41/69 (59.42%), Query Frame = 3 Query: 291 NANMRYGASRDQDGKSNVWAIEPKMKVEEGENKGASLATGAIILAVAAAAVVATLA-----NLPSPDTY 482
N + G S DQDGKSNVWAIEPKM++E NK TG ++AV AV A +A NLP PD +
Sbjct: 46 NNFVERGVSMDQDGKSNVWAIEPKMEIE---NKSTEEKTGGALIAVGGFAVFAAVAAGVLSNLPDPDQF 111
BLAST of jgi.p|Trimin1|101142 vs. uniprot
Match: A0A7S2BRW2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BRW2_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 4.410e-7 Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 3 Query: 303 RYGASRDQDGKSNVWAIEPKMKVE-----EGENKGASLATGAIILAVAAAAVVATLANLPSPD 476
R G+S DQDGKSNVWA+EPKM+VE +G K A + GA A AA AV +ANLP+PD
Sbjct: 83 RLGSSVDQDGKSNVWAVEPKMEVEVSKEGDGFKKTAIIGGGA---AAAAIAVFGIVANLPNPD 142
BLAST of jgi.p|Trimin1|101142 vs. uniprot
Match: A0A448ZED7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZED7_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 7.030e-7 Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 291 NANMRYGASRDQDGKSNVWAIEPKMKVEEG---ENKGASLATGAIILAVAAAAVVATLANLPSPDTY 482
++ + G S DQDGKSNVWAIEPKM+VE E ++L GA ++A A AA VA L NLP P+ +
Sbjct: 42 DSGIERGVSVDQDGKSNVWAIEPKMEVESTSAEEKTKSALIAGAGLIAFAGAAGVA-LTNLPDPNQF 107
BLAST of jgi.p|Trimin1|101142 vs. uniprot
Match: A0A7S0AI54_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AI54_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 2.820e-6 Identity = 32/62 (51.61%), Postives = 37/62 (59.68%), Query Frame = 3 Query: 309 GASRDQDGKSNVWAIEPKMKVE----EGENKGASLATGAIILAVAAAAVVATLANLPSPDTY 482
G S DQDGKSNVWAIEPKM+V+ E + G +A G LA AA L NLP PD +
Sbjct: 53 GVSVDQDGKSNVWAIEPKMEVDTKSAEEKTTGTLIAVGG--LAAFAAVAAGVLTNLPDPDQF 112
BLAST of jgi.p|Trimin1|101142 vs. uniprot
Match: A0A7S2W9V8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9V8_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 3.950e-6 Identity = 37/72 (51.39%), Postives = 44/72 (61.11%), Query Frame = 3 Query: 270 QSGFFQPNANMRYGASRDQDGKSNVWAIEPKMKVEEGENKGASLATGAIILAVAAAAV-VATLAN--LPSPD 476
Q FF R G S DQDGKSNVWA+EPKM+VE G+ +G + +I AAAAV +ATL LP PD
Sbjct: 41 QEKFFSTPPAQRLGTSVDQDGKSNVWAVEPKMQVEVGK-EGQGVQQALVIGGGAAAAVALATLIVNVLPDPD 111 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|101142 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14203 ID=mRNA_14203|Name=jgi.p|Trimin1|101142|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=862bp|location=Sequence derived from alignment at Contig_97:183068..187925- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCAACATATACACGCTTGGAGCATTCTACACACAGCTACCAACGATGATGback to top protein sequence of jgi.p|Trimin1|101142 >Trimin1|101142|CE101141_244 ID=Trimin1|101142|CE101141_244|Name=jgi.p|Trimin1|101142|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp MMSMKLCVVLLALLACVSAFAPVGSGRSLARSAVATRRAVRQLRMSESETback to top mRNA from alignment at Contig_97:183068..187925- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14203 ID=mRNA_14203|Name=jgi.p|Trimin1|101142|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4858bp|location=Sequence derived from alignment at Contig_97:183068..187925- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_97:183068..187925- >mRNA_14203 ID=mRNA_14203|Name=jgi.p|Trimin1|101142|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_97:183068..187925- (Tribonema minus UTEX_B_3156 )back to top |