mRNA_14154 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A835ZAC2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC2_9STRA) HSP 1 Score: 611 bits (1576), Expect = 4.260e-220 Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 1 Query: 1 MPTHTRIALASAPCSGGTAATAAVLSAEASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSGGLRDVLGTPAAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDDEGGXXXXXXXXXEGEEGEGAPVKPGERGWMDMGVNDLVQ 1005 MPTHTRIALASAPCSGGTAATAAVLSAEASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSGGLRDVLGTPAAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDDEGGXXXXXXXXXEGEEGEGAPVKPGERGWMDMGVNDLVQ Sbjct: 1 MPTHTRIALASAPCSGGTAATAAVLSAEASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSGGLRDVLGTPAAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDDEGGXXXXXXXXXEGEEGEGAPVKPGERGWMDMGVNDLVQ 335
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE) HSP 1 Score: 336 bits (862), Expect = 4.730e-101 Identity = 195/309 (63.11%), Postives = 222/309 (71.84%), Query Frame = 1 Query: 82 EASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQ---MTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNA---------DYMSSGGLRDVLGTPAAAGETAET-AAAEGPAAPDGGA-------------------------DAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDDEG 894 E RRGGL L++ + R R+ FPDR LVQYD+GKLQ LA LLR+ K GGHKCLIFTQ M+RMLDVLE FL +HGHTYVRLDGSTGVE+RQRLMDRFN D +LFCFILSTRSGGLGINLTGADTVIF+DSDWNPAMD+QAQDRAHRIGQTR+VHIYRLVT +++EENILKKAQQKRHLD LVMT GNF+ DY+S+GGL+D+LG G T AAA G + G + D A PAMS ++ AMASLEDADDV AG AL+REA E EFD+ G Sbjct: 1980 EVVRRGGLSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQAMGMSRMLDVLEEFLTLHGHTYVRLDGSTGVEKRQRLMDRFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFLVMTAGNFSGGGEGQEEPMDYLSAGGLKDILG-----GNTLGVDAAAAGAGSSSGNSGEGXXXXXXXXXXXXXXXXXXXXXXDGAPPAMSEKELRAAMASLEDADDVEAGRALEREAADEQLEFDENG 2283
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A7S3UX30_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX30_HETAK) HSP 1 Score: 295 bits (754), Expect = 4.630e-97 Identity = 149/199 (74.87%), Postives = 172/199 (86.43%), Query Frame = 1 Query: 58 ATAAVLSAEASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYM 654 A AA L+A A+ G L+L + + +R R+ FPDR LVQ+DSGK Q+LA LLR LK+G H+ LIFTQM++MLDVLE FL +HGH Y+RLDGSTGVERRQRLMDRFN D R+FCFILSTRSGGLGINLTGADTV+F+DSDWNPAMD+QAQDRAHRIGQTRDVHIYRLV R+TVEENIL+KAQQKR LDHLVMTEG F+ + M Sbjct: 2 AAAAALAAAAA--GDLDLYYPATARRRMQFPDRRLVQFDSGKFQSLAILLRKLKAGKHRVLIFTQMSKMLDVLEEFLTLHGHVYLRLDGSTGVERRQRLMDRFNADTRVFCFILSTRSGGLGINLTGADTVVFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVCRSTVEENILRKAQQKRRLDHLVMTEGQFSVEGM 198
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI) HSP 1 Score: 322 bits (825), Expect = 4.210e-96 Identity = 160/210 (76.19%), Postives = 180/210 (85.71%), Query Frame = 1 Query: 82 EASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNA---------DYMSSGGLRDVLG 684 E RRGGL L++ + R R+ FPDR LVQYD+GKLQ LA LLR+ K GGHKCLIFTQM+RMLDVLE FL +HGHTYVRLDGSTGVE+RQRLMDRFN D +LFCFILSTRSGGLGINLTGADTVIF+DSDWNPAMD+QAQDRAHRIGQTR+VHIYRLVT +++EENILKKAQQKRHLD LVMT GNF+ DYMS+GGL+D+LG Sbjct: 1661 EVVRRGGLSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQMSRMLDVLEEFLTLHGHTYVRLDGSTGVEKRQRLMDRFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFLVMTAGNFSGGGEGQENPMDYMSAGGLKDILG 1870
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A7S2UQV7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQV7_9STRA) HSP 1 Score: 290 bits (742), Expect = 6.470e-92 Identity = 165/277 (59.57%), Postives = 194/277 (70.04%), Query Frame = 1 Query: 127 SRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNA----------------------DYMSSGGLRDVLGTPAAA-GETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDD 888 +R+ FPD+ LVQ+D+GKLQALA LLR K GGHK LIFTQM++MLD+LE FL ++GHTY+RLDGSTGVE+RQRLMDRFN DD++FCFILSTRSGGLGINLTGADTV+F+DSDWNPAMD+QAQDRAHRIGQTRDVHIYRLVT ++EENIL KA+QKRHLD LVM EG F+ D S GGL D+LG GET++ G + + S + AMASLED DDV A Q+EA E QEFD+ Sbjct: 24 ARLTSFFPDKKLVQFDAGKLQALAELLRERKRGGHKALIFTQMSKMLDILEAFLNLNGHTYLRLDGSTGVEKRQRLMDRFNNDDKVFCFILSTRSGGLGINLTGADTVVFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTEHSIEENILIKAKQKRHLDFLVMDEGKFHTVEPPSAGKETPNDDTTEEDAAPDLFSKGGLLDILGVQKDGDGETSKATEERG----NSENECTETEPSKEQMETAMASLEDEDDVLAMRGAQKEAAEELQEFDE 296
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A2W1BJW4_HELAM (Helicase C-terminal domain-containing protein n=2 Tax=Helicoverpa armigera TaxID=29058 RepID=A0A2W1BJW4_HELAM) HSP 1 Score: 280 bits (717), Expect = 2.230e-89 Identity = 154/262 (58.78%), Postives = 190/262 (72.52%), Query Frame = 1 Query: 103 LELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSGGLRDVLGTPAAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDD 888 L LLHA SR+ VAFP L+QYD GKLQ L LLR LK+ GH+ LIFTQMTR+LDVLE FL+MHGH Y+RLDG+T V+RRQ L+DRFN D R+F FILSTRSGG+G+NLTGAD+V+F+DSDWNP MD+QAQDR HRIGQTRDVH+YRLVT ATVEENIL+KA+QKR L HL + +G+F Y+ S ++++ G+ A GET ET AE PAA GG ++ A+A+ ED D + EA + EFD+ Sbjct: 26 LALLHAPASRLAVAFPHPRLLQYDCGKLQTLDALLRRLKAAGHRVLIFTQMTRVLDVLEAFLSMHGHAYLRLDGATRVDRRQPLVDRFNADPRIFAFILSTRSGGVGLNLTGADSVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHVYRLVTAATVEENILRKAEQKRALGHLAIEDGHFTTSYLRSANIKELFGSEAENGET-ETVEAE-PAA--GG-----------ELESALAAAEDEADXXXXXXARAEAQGDLAEFDE 272
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A7S4NI31_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NI31_9STRA) HSP 1 Score: 296 bits (759), Expect = 1.550e-87 Identity = 167/276 (60.51%), Postives = 202/276 (73.19%), Query Frame = 1 Query: 118 ASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNA------------------DYMSSGGLRDVLGTPAAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDDE 891 AS +R+ FPD+ LVQ+D+GKLQA+A L+ LK GGH+ LIFTQM++MLD+LE FL +HGHTY+RLDG TGVE+RQRLMDRFN D ++FCFILSTRSGGLGINLTGADTVIF+DSDWNPAMD+QAQDRAHRIGQTRDVHIYRLVT ++EENIL KA+QKRHLD LVM EG F+A D ++ GGLRD+LG +GE +E + P G ++ +S I AMASLED DDV A Q+EA+ E QEFD++ Sbjct: 648 ASQARLTSFFPDKKLVQFDAGKLQAMAVLMNDLKRGGHRALIFTQMSKMLDILEAFLNLHGHTYLRLDGGTGVEKRQRLMDRFNNDTKVFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTEHSIEENILIKAKQKRHLDFLVMDEGKFHAAPEAGSISVKEESEAEEPDLLTKGGLRDILGV---SGEPSEHV--DRPKHECGNSEGE-EKLSKEQIENAMASLEDEDDVKAMQGAQKEAEEELQEFDED 917
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A7S1U7E9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7E9_9STRA) HSP 1 Score: 273 bits (698), Expect = 1.590e-87 Identity = 151/260 (58.08%), Postives = 190/260 (73.08%), Query Frame = 1 Query: 130 RMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSG-GLRDVLGTP----------------AAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQRE 858 R+ + FPDR LVQ+D GKLQ LA LLR L GGHKCLIFTQM++ML++LE FL ++ +TY+RLDGSTGVE+RQ+LMDRFN+D++LFCFILSTRSGGLGINLTGADTVIF+DSDWNPAMD+QAQDRAHRIGQTR+VHIYRLV+++T+EENIL+KA+QK+ LD LVMT+G+F+A +G L+ +L + AA E ET AA AG + AD+ MA LED +D +A + +E Sbjct: 28 RLNMYFPDRKLVQFDCGKLQTLARLLRRLYLGGHKCLIFTQMSKMLNILEEFLNIYNYTYLRLDGSTGVEKRQKLMDRFNSDEKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVSQSTIEENILRKAKQKQQLDFLVMTKGDFSASNFYTGDNLKGMLDSGVYAANAQKQVEEKRARAAEEEKKETEAA------------AGEPSNPADLKAVMAQLEDEEDASAAVKMNKE 275
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A2H1WYP5_SPOFR (SFRICE_038365 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1WYP5_SPOFR) HSP 1 Score: 276 bits (705), Expect = 6.640e-87 Identity = 137/197 (69.54%), Postives = 160/197 (81.22%), Query Frame = 1 Query: 79 AEASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSGGL 669 A A R L L HA+ SR VAFP SL+QYD GKLQ L LLR LK+GGH+ LIFTQMTR+LDVLE FL+MHGHTY+RLDG+T V+RRQ L+DRFN D R+F FILSTRSGG+G+NLTGAD+VIF+DSDWNP MD+QAQDR HRIGQTRDVH+YRLVT ATVEENIL+KA+QKR L HL + +G+F Y+ GL Sbjct: 20 AGAGARAALSLFHAAASRQAVAFPHPSLLQYDCGKLQTLDGLLRRLKAGGHRVLIFTQMTRVLDVLEAFLSMHGHTYLRLDGATRVDRRQPLVDRFNADPRVFAFILSTRSGGVGLNLTGADSVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHVYRLVTAATVEENILRKAEQKRALGHLAIEDGHFTTSYLRGVGL 216
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: UPI00067D8B2C (helicase domino-like n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067D8B2C) HSP 1 Score: 281 bits (718), Expect = 9.580e-87 Identity = 151/262 (57.63%), Postives = 186/262 (70.99%), Query Frame = 1 Query: 103 LELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSGGLRDVLGTPAAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDD 888 L LLHA SR VAFP +L+QYD GKLQ L LLR LK+G H+ LIFTQMTR+LDVLE FL++HGHTY+RLDG+T VERRQ L+DRFN D R+F FILSTRSGG+G+NLTGAD V+F+DSDWNP MD+QAQDR HRIGQTRDVH+YRLVT ATVEENIL+KA+QKR L HL + GNF Y+ + ++++ G A P++P AG +A ++ A+A+ ED D AA A + E E EFD+ Sbjct: 184 LALLHAPASRQAVAFPHPALLQYDCGKLQTLDELLRTLKAGKHRVLIFTQMTRVLDVLEGFLSLHGHTYLRLDGATRVERRQALVDRFNADARVFAFILSTRSGGVGLNLTGADCVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHVYRLVTAATVEENILRKAEQKRALGHLAIEHGNFTTSYLKASNIKELFGAEAT------------PSSPPS----AGANTNAGELESALAAAEDEADAAAALAARAEQQGELAEFDE 429 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14154 ID=mRNA_14154|Name=jgi.p|Trimin1|175405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1008bp|location=Sequence derived from alignment at Contig_125:267604..269445- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCCACTCATACACGCATCGCGTTGGCCTCTGCCCCCTGCAGCGGCGGback to top protein sequence of jgi.p|Trimin1|175405 >Trimin1|175405|e_gw1.125.10.1 ID=Trimin1|175405|e_gw1.125.10.1|Name=jgi.p|Trimin1|175405|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=336bp MPTHTRIALASAPCSGGTAATAAVLSAEASRRGGLELLHASGSRMRVAFPback to top mRNA from alignment at Contig_125:267604..269445- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14154 ID=mRNA_14154|Name=jgi.p|Trimin1|175405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1842bp|location=Sequence derived from alignment at Contig_125:267604..269445- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_125:267604..269445- >mRNA_14154 ID=mRNA_14154|Name=jgi.p|Trimin1|175405|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1008bp|location=Sequence derived from alignment at Contig_125:267604..269445- (Tribonema minus UTEX_B_3156 )back to top |