mRNA_14154 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175405
Unique NamemRNA_14154
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A835ZAC2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC2_9STRA)

HSP 1 Score: 611 bits (1576), Expect = 4.260e-220
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 1
Query:    1 MPTHTRIALASAPCSGGTAATAAVLSAEASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSGGLRDVLGTPAAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDDEGGXXXXXXXXXEGEEGEGAPVKPGERGWMDMGVNDLVQ 1005
            MPTHTRIALASAPCSGGTAATAAVLSAEASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSGGLRDVLGTPAAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDDEGGXXXXXXXXXEGEEGEGAPVKPGERGWMDMGVNDLVQ
Sbjct:    1 MPTHTRIALASAPCSGGTAATAAVLSAEASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSGGLRDVLGTPAAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDDEGGXXXXXXXXXEGEEGEGAPVKPGERGWMDMGVNDLVQ 335          
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 336 bits (862), Expect = 4.730e-101
Identity = 195/309 (63.11%), Postives = 222/309 (71.84%), Query Frame = 1
Query:   82 EASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQ---MTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNA---------DYMSSGGLRDVLGTPAAAGETAET-AAAEGPAAPDGGA-------------------------DAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDDEG 894
            E  RRGGL L++ +  R R+ FPDR LVQYD+GKLQ LA LLR+ K GGHKCLIFTQ   M+RMLDVLE FL +HGHTYVRLDGSTGVE+RQRLMDRFN D +LFCFILSTRSGGLGINLTGADTVIF+DSDWNPAMD+QAQDRAHRIGQTR+VHIYRLVT +++EENILKKAQQKRHLD LVMT GNF+          DY+S+GGL+D+LG     G T    AAA G  +  G +                         D A PAMS  ++  AMASLEDADDV AG AL+REA  E  EFD+ G
Sbjct: 1980 EVVRRGGLSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQAMGMSRMLDVLEEFLTLHGHTYVRLDGSTGVEKRQRLMDRFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFLVMTAGNFSGGGEGQEEPMDYLSAGGLKDILG-----GNTLGVDAAAAGAGSSSGNSGEGXXXXXXXXXXXXXXXXXXXXXXDGAPPAMSEKELRAAMASLEDADDVEAGRALEREAADEQLEFDENG 2283          
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A7S3UX30_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX30_HETAK)

HSP 1 Score: 295 bits (754), Expect = 4.630e-97
Identity = 149/199 (74.87%), Postives = 172/199 (86.43%), Query Frame = 1
Query:   58 ATAAVLSAEASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYM 654
            A AA L+A A+  G L+L + + +R R+ FPDR LVQ+DSGK Q+LA LLR LK+G H+ LIFTQM++MLDVLE FL +HGH Y+RLDGSTGVERRQRLMDRFN D R+FCFILSTRSGGLGINLTGADTV+F+DSDWNPAMD+QAQDRAHRIGQTRDVHIYRLV R+TVEENIL+KAQQKR LDHLVMTEG F+ + M
Sbjct:    2 AAAAALAAAAA--GDLDLYYPATARRRMQFPDRRLVQFDSGKFQSLAILLRKLKAGKHRVLIFTQMSKMLDVLEEFLTLHGHVYLRLDGSTGVERRQRLMDRFNADTRVFCFILSTRSGGLGINLTGADTVVFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVCRSTVEENILRKAQQKRRLDHLVMTEGQFSVEGM 198          
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 4.210e-96
Identity = 160/210 (76.19%), Postives = 180/210 (85.71%), Query Frame = 1
Query:   82 EASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNA---------DYMSSGGLRDVLG 684
            E  RRGGL L++ +  R R+ FPDR LVQYD+GKLQ LA LLR+ K GGHKCLIFTQM+RMLDVLE FL +HGHTYVRLDGSTGVE+RQRLMDRFN D +LFCFILSTRSGGLGINLTGADTVIF+DSDWNPAMD+QAQDRAHRIGQTR+VHIYRLVT +++EENILKKAQQKRHLD LVMT GNF+          DYMS+GGL+D+LG
Sbjct: 1661 EVVRRGGLSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQMSRMLDVLEEFLTLHGHTYVRLDGSTGVEKRQRLMDRFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFLVMTAGNFSGGGEGQENPMDYMSAGGLKDILG 1870          
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A7S2UQV7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQV7_9STRA)

HSP 1 Score: 290 bits (742), Expect = 6.470e-92
Identity = 165/277 (59.57%), Postives = 194/277 (70.04%), Query Frame = 1
Query:  127 SRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNA----------------------DYMSSGGLRDVLGTPAAA-GETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDD 888
            +R+   FPD+ LVQ+D+GKLQALA LLR  K GGHK LIFTQM++MLD+LE FL ++GHTY+RLDGSTGVE+RQRLMDRFN DD++FCFILSTRSGGLGINLTGADTV+F+DSDWNPAMD+QAQDRAHRIGQTRDVHIYRLVT  ++EENIL KA+QKRHLD LVM EG F+                       D  S GGL D+LG      GET++     G    +   +      S   +  AMASLED DDV A    Q+EA  E QEFD+
Sbjct:   24 ARLTSFFPDKKLVQFDAGKLQALAELLRERKRGGHKALIFTQMSKMLDILEAFLNLNGHTYLRLDGSTGVEKRQRLMDRFNNDDKVFCFILSTRSGGLGINLTGADTVVFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTEHSIEENILIKAKQKRHLDFLVMDEGKFHTVEPPSAGKETPNDDTTEEDAAPDLFSKGGLLDILGVQKDGDGETSKATEERG----NSENECTETEPSKEQMETAMASLEDEDDVLAMRGAQKEAAEELQEFDE 296          
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A2W1BJW4_HELAM (Helicase C-terminal domain-containing protein n=2 Tax=Helicoverpa armigera TaxID=29058 RepID=A0A2W1BJW4_HELAM)

HSP 1 Score: 280 bits (717), Expect = 2.230e-89
Identity = 154/262 (58.78%), Postives = 190/262 (72.52%), Query Frame = 1
Query:  103 LELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSGGLRDVLGTPAAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDD 888
            L LLHA  SR+ VAFP   L+QYD GKLQ L  LLR LK+ GH+ LIFTQMTR+LDVLE FL+MHGH Y+RLDG+T V+RRQ L+DRFN D R+F FILSTRSGG+G+NLTGAD+V+F+DSDWNP MD+QAQDR HRIGQTRDVH+YRLVT ATVEENIL+KA+QKR L HL + +G+F   Y+ S  ++++ G+ A  GET ET  AE PAA  GG           ++  A+A+ ED  D       + EA  +  EFD+
Sbjct:   26 LALLHAPASRLAVAFPHPRLLQYDCGKLQTLDALLRRLKAAGHRVLIFTQMTRVLDVLEAFLSMHGHAYLRLDGATRVDRRQPLVDRFNADPRIFAFILSTRSGGVGLNLTGADSVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHVYRLVTAATVEENILRKAEQKRALGHLAIEDGHFTTSYLRSANIKELFGSEAENGET-ETVEAE-PAA--GG-----------ELESALAAAEDEADXXXXXXARAEAQGDLAEFDE 272          
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A7S4NI31_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NI31_9STRA)

HSP 1 Score: 296 bits (759), Expect = 1.550e-87
Identity = 167/276 (60.51%), Postives = 202/276 (73.19%), Query Frame = 1
Query:  118 ASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNA------------------DYMSSGGLRDVLGTPAAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDDE 891
            AS +R+   FPD+ LVQ+D+GKLQA+A L+  LK GGH+ LIFTQM++MLD+LE FL +HGHTY+RLDG TGVE+RQRLMDRFN D ++FCFILSTRSGGLGINLTGADTVIF+DSDWNPAMD+QAQDRAHRIGQTRDVHIYRLVT  ++EENIL KA+QKRHLD LVM EG F+A                  D ++ GGLRD+LG    +GE +E    + P    G ++     +S   I  AMASLED DDV A    Q+EA+ E QEFD++
Sbjct:  648 ASQARLTSFFPDKKLVQFDAGKLQAMAVLMNDLKRGGHRALIFTQMSKMLDILEAFLNLHGHTYLRLDGGTGVEKRQRLMDRFNNDTKVFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTEHSIEENILIKAKQKRHLDFLVMDEGKFHAAPEAGSISVKEESEAEEPDLLTKGGLRDILGV---SGEPSEHV--DRPKHECGNSEGE-EKLSKEQIENAMASLEDEDDVKAMQGAQKEAEEELQEFDED 917          
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A7S1U7E9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7E9_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.590e-87
Identity = 151/260 (58.08%), Postives = 190/260 (73.08%), Query Frame = 1
Query:  130 RMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSG-GLRDVLGTP----------------AAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQRE 858
            R+ + FPDR LVQ+D GKLQ LA LLR L  GGHKCLIFTQM++ML++LE FL ++ +TY+RLDGSTGVE+RQ+LMDRFN+D++LFCFILSTRSGGLGINLTGADTVIF+DSDWNPAMD+QAQDRAHRIGQTR+VHIYRLV+++T+EENIL+KA+QK+ LD LVMT+G+F+A    +G  L+ +L +                 AA  E  ET AA            AG   + AD+   MA LED +D +A   + +E
Sbjct:   28 RLNMYFPDRKLVQFDCGKLQTLARLLRRLYLGGHKCLIFTQMSKMLNILEEFLNIYNYTYLRLDGSTGVEKRQKLMDRFNSDEKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVSQSTIEENILRKAKQKQQLDFLVMTKGDFSASNFYTGDNLKGMLDSGVYAANAQKQVEEKRARAAEEEKKETEAA------------AGEPSNPADLKAVMAQLEDEEDASAAVKMNKE 275          
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: A0A2H1WYP5_SPOFR (SFRICE_038365 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1WYP5_SPOFR)

HSP 1 Score: 276 bits (705), Expect = 6.640e-87
Identity = 137/197 (69.54%), Postives = 160/197 (81.22%), Query Frame = 1
Query:   79 AEASRRGGLELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSGGL 669
            A A  R  L L HA+ SR  VAFP  SL+QYD GKLQ L  LLR LK+GGH+ LIFTQMTR+LDVLE FL+MHGHTY+RLDG+T V+RRQ L+DRFN D R+F FILSTRSGG+G+NLTGAD+VIF+DSDWNP MD+QAQDR HRIGQTRDVH+YRLVT ATVEENIL+KA+QKR L HL + +G+F   Y+   GL
Sbjct:   20 AGAGARAALSLFHAAASRQAVAFPHPSLLQYDCGKLQTLDGLLRRLKAGGHRVLIFTQMTRVLDVLEAFLSMHGHTYLRLDGATRVDRRQPLVDRFNADPRVFAFILSTRSGGVGLNLTGADSVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHVYRLVTAATVEENILRKAEQKRALGHLAIEDGHFTTSYLRGVGL 216          
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Match: UPI00067D8B2C (helicase domino-like n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067D8B2C)

HSP 1 Score: 281 bits (718), Expect = 9.580e-87
Identity = 151/262 (57.63%), Postives = 186/262 (70.99%), Query Frame = 1
Query:  103 LELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSGGLRDVLGTPAAAGETAETAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDD 888
            L LLHA  SR  VAFP  +L+QYD GKLQ L  LLR LK+G H+ LIFTQMTR+LDVLE FL++HGHTY+RLDG+T VERRQ L+DRFN D R+F FILSTRSGG+G+NLTGAD V+F+DSDWNP MD+QAQDR HRIGQTRDVH+YRLVT ATVEENIL+KA+QKR L HL +  GNF   Y+ +  ++++ G  A             P++P      AG   +A ++  A+A+ ED  D AA  A + E   E  EFD+
Sbjct:  184 LALLHAPASRQAVAFPHPALLQYDCGKLQTLDELLRTLKAGKHRVLIFTQMTRVLDVLEGFLSLHGHTYLRLDGATRVERRQALVDRFNADARVFAFILSTRSGGVGLNLTGADCVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHVYRLVTAATVEENILRKAEQKRALGHLAIEHGNFTTSYLKASNIKELFGAEAT------------PSSPPS----AGANTNAGELESALAAAEDEADAAAALAARAEQQGELAEFDE 429          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175405 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAC2_9STRA4.260e-220100.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5KKD6_9PHAE4.730e-10163.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3UX30_HETAK4.630e-9774.87Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FTP0_ECTSI4.210e-9676.19Similar to E1a binding protein P400 (Partial) (Fra... [more]
A0A7S2UQV7_9STRA6.470e-9259.57Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A2W1BJW4_HELAM2.230e-8958.78Helicase C-terminal domain-containing protein n=2 ... [more]
A0A7S4NI31_9STRA1.550e-8760.51Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1U7E9_9STRA1.590e-8758.08Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A2H1WYP5_SPOFR6.640e-8769.54SFRICE_038365 (Fragment) n=1 Tax=Spodoptera frugip... [more]
UPI00067D8B2C9.580e-8757.63helicase domino-like n=1 Tax=Amyelois transitella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_125contigContig_125:267604..269445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175405|e_gw1.125.10.1
BRITEko00000,ko01000,ko03036
KEGG koko:K11320
Descriptionhelicase activity
COG categoryKL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0553@1|root,KOG0391@2759|Eukaryota
Evalue6.91e-97
Seed ortholog2880.D7FTP0
Hectar predicted targeting categoryother localisation
TranscriptId175727
TrackFilteredModels1
ProteinId175405
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175405gene_14154Tribonema minus UTEX_B_3156 geneContig_125 267604..269445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175405Trimin1|175405|e_gw1.125.10.1Tribonema minus UTEX_B_3156 polypeptideContig_125 267604..269445 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14154_2exon_14154_2Tribonema minus UTEX_B_3156 exonContig_125 267604..268119 -
exon_14154_1exon_14154_1Tribonema minus UTEX_B_3156 exonContig_125 268954..269445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14154CDS_14154Tribonema minus UTEX_B_3156 CDSContig_125 268954..269445 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14154 ID=mRNA_14154|Name=jgi.p|Trimin1|175405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1008bp|location=Sequence derived from alignment at Contig_125:267604..269445- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACTCATACACGCATCGCGTTGGCCTCTGCCCCCTGCAGCGGCGG
CACCGCGGCAACCGCCGCCGTGCTTAGCGCTGAGGCCTCGCGCCGTGGCG
GCCTGGAGCTCCTGCACGCGTCCGGCTCGCGCATGCGCGTCGCGTTCCCG
GACCGCTCCCTGGTGCAGTACGACTCGGGGAAGCTGCAGGCGCTCGCGCC
GCTGCTGCGCGCGCTCAAGTCCGGCGGCCACAAGTGCCTTATTTTCACGC
AGATGACGCGCATGCTGGACGTCCTGGAGCGCTTCCTGGCGATGCACGGA
CACACGTACGTACGGCTGGATGGGTCTACGGGGGTGGAGCGTCGCCAGCG
CCTGATGGACAGGTTCAACACGGACGACCGGCTCTTCTGCTTCATACTGA
GCACGCGCAGCGGGGGGCTGGGCATCAACCTCACGGGCGCGGATACGGTG
ATCTTCTTTGACAGCGACTGGAACCCCGCCATGGACAGCCAGGCGCAGGA
CCGCGCGCACCGCATCGGGCAGACGCGCGACGTGCACATCTACCGCCTCG
TCACGCGCGCGACCGTCGAGGAGAACATCCTCAAGAAGGCGCAGCAGAAG
CGCCACCTCGACCACCTCGTCATGACAGAGGGCAACTTCAATGCCGACTA
CATGAGCTCTGGCGGACTGCGCGACGTCCTCGGCACCCCCGCGGCAGCAG
GTGAAACCGCCGAAACAGCTGCCGCCGAGGGTCCTGCGGCGCCGGATGGC
GGAGCGGATGCTGCGGGCCCGGCAATGTCAGCGGCGGATATTGCTCAGGC
GATGGCGTCGTTGGAGGATGCGGACGATGTGGCTGCGGGCGCGGCGCTGC
AGCGGGAGGCAGATGCGGAGGCGCAGGAGTTTGATGATGAGGGCGGTGGC
GGCGGCGGTGGCGGCGGCGGCGCGGAGGGCGAGGAGGGCGAAGGCGCTCC
GGTCAAACCTGGTGAGCGTGGGTGGATGGACATGGGCGTGAATGATCTTG
TACAGTGA
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protein sequence of jgi.p|Trimin1|175405

>Trimin1|175405|e_gw1.125.10.1 ID=Trimin1|175405|e_gw1.125.10.1|Name=jgi.p|Trimin1|175405|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=336bp
MPTHTRIALASAPCSGGTAATAAVLSAEASRRGGLELLHASGSRMRVAFP
DRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHG
HTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTV
IFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQK
RHLDHLVMTEGNFNADYMSSGGLRDVLGTPAAAGETAETAAAEGPAAPDG
GADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDDEGGG
GGGGGGGAEGEEGEGAPVKPGERGWMDMGVNDLVQ*
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mRNA from alignment at Contig_125:267604..269445-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14154 ID=mRNA_14154|Name=jgi.p|Trimin1|175405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1842bp|location=Sequence derived from alignment at Contig_125:267604..269445- (Tribonema minus UTEX_B_3156 )
ATGCCCACTCATACACGCATCGCGTTGGCCTCTGCCCCCTGCAGCGGCGG CACCGCGGCAACCGCCGCCGTGCTTAGCGCTGAGGCCTCGCGCCGTGGCG GCCTGGAGCTCCTGCACGCGTCCGGCTCGCGCATGCGCGTCGCGTTCCCG GACCGCTCCCTGGTGCAGTACGACTCGGGGAAGCTGCAGGCGCTCGCGCC GCTGCTGCGCGCGCTCAAGTCCGGCGGCCACAAGTGCCTTATTTTCACGC AGATGACGCGCATGCTGGACGTCCTGGAGCGCTTCCTGGCGATGCACGGA CACACGTACGTACGGCTGGATGGGTCTACGGGGGTGGAGCGTCGCCAGCG CCTGATGGACAGGTTCAACACGGACGACCGGCTCTTCTGCTTCATACTGA GCACGCGCAGCGGGGGGCTGGGCATCAACCTCACGGGCGCGGATACGGTG ATCTTCTTTGACAGCGACTGGAACCCCGCCATGGACAGCCAGGTACGTGT GTGTGGTTATGCATGGTGGTGGTGTGGCTCGGGGGGGTCAGGTGGGGTGA GGATAGTTTGAGGTTGGTAGCTGGGAGGGCGGGGGGGGGGGGGGGGGGGC TGGTGAGCGTTCTGAGTTCAACTGTGAACTGTGAGGGAGAAGTTGATGGG TGATTTCTGAGGCATGCAAGGGCTTATTTGTGTCAAGTTTAAGCTTGACG TTTCACACTGAGCCTTTTCTGGCAGTGCGCCAAAAGGTAGGCTGCAAGCT GTATCTGTTGAGTTTCAGATGCGGCAGCCTTTGTCTTACAGTAGTTTCAA GTAAGCGCCATAGCGCGTATGGCCACTGCTGTTTGCAGACCTGCTAGGAT ACATGGTGTATCGCTACCACGAGCAAAATCTTCAAAGGTGAAGTTTCCAT CAGAGTAAATCACCCACATCCTGACTTGATGTAGTCATAAATCAGTGAAT ATGTAGTCATTCATAATTGAATCACCACTTCCAGTCATGTACACTTCTTG GCCAGATCTACATACCTCGAGCTCAGCACCTGCACACCTCGAACACTACT CCCTCCTTGTAGGCGCAAGACCGCACGCATCGCATCGGCCACACGCGCGA CGCGCACATCTACCTCCTCTGTGTACCACGCTACCGTACTCCATACATAC TCCATGCATACCCTTAACCCTGCGCCTCTGTGTACGCTACGTTACCATCT GCAGGCGCAAGACCGCGCGCACCGCATCGAGCAGACGCGCGACGTGCGCA TCTACCGCCCCTCGCACACTTCATAACCATACCTACATACCCGTCACCCT ATGCCCACATACCCCCACCTCCGCAGGCGCAGGACCGCGCGCACCGCATC GGGCAGACGCGCGACGTGCACATCTACCGCCTCGTCACGCGCGCGACCGT CGAGGAGAACATCCTCAAGAAGGCGCAGCAGAAGCGCCACCTCGACCACC TCGTCATGACAGAGGGCAACTTCAATGCCGACTACATGAGCTCTGGCGGA CTGCGCGACGTCCTCGGCACCCCCGCGGCAGCAGGTGAAACCGCCGAAAC AGCTGCCGCCGAGGGTCCTGCGGCGCCGGATGGCGGAGCGGATGCTGCGG GCCCGGCAATGTCAGCGGCGGATATTGCTCAGGCGATGGCGTCGTTGGAG GATGCGGACGATGTGGCTGCGGGCGCGGCGCTGCAGCGGGAGGCAGATGC GGAGGCGCAGGAGTTTGATGATGAGGGCGGTGGCGGCGGCGGTGGCGGCG GCGGCGCGGAGGGCGAGGAGGGCGAAGGCGCTCCGGTCAAACCTGGTGAG CGTGGGTGGATGGACATGGGCGTGAATGATCTTGTACAGTGA
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Coding sequence (CDS) from alignment at Contig_125:267604..269445-

>mRNA_14154 ID=mRNA_14154|Name=jgi.p|Trimin1|175405|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1008bp|location=Sequence derived from alignment at Contig_125:267604..269445- (Tribonema minus UTEX_B_3156 )
ATGCCCACTCATACACGCATCGCGTTGGCCTCTGCCCCCTGCAGCGGCGG
CACCGCGGCAACCGCCGCCGTGCTTAGCGCTGAGGCCTCGCGCCGTGGCG
GCCTGGAGCTCCTGCACGCGTCCGGCTCGCGCATGCGCGTCGCGTTCCCG
GACCGCTCCCTGGTGCAGTACGACTCGGGGAAGCTGCAGGCGCTCGCGCC
GCTGCTGCGCGCGCTCAAGTCCGGCGGCCACAAGTGCCTTATTTTCACGC
AGATGACGCGCATGCTGGACGTCCTGGAGCGCTTCCTGGCGATGCACGGA
CACACGTACGTACGGCTGGATGGGTCTACGGGGGTGGAGCGTCGCCAGCG
CCTGATGGACAGGTTCAACACGGACGACCGGCTCTTCTGCTTCATACTGA
GCACGCGCAGCGGGGGGCTGGGCATCAACCTCACGGGCGCGGATACGGTG
ATCTTCTTTGACAGCGACTGGAACCCCGCCATGGACAGCCAGGCGCAGGA
CCGCGCGCACCGCATCGGGCAGACGCGCGACGTGCACATCTACCGCCTCG
TCACGCGCGCGACCGTCGAGGAGAACATCCTCAAGAAGGCGCAGCAGAAG
CGCCACCTCGACCACCTCGTCATGACAGAGGGCAACTTCAATGCCGACTA
CATGAGCTCTGGCGGACTGCGCGACGTCCTCGGCACCCCCGCGGCAGCAG
GTGAAACCGCCGAAACAGCTGCCGCCGAGGGTCCTGCGGCGCCGGATGGC
GGAGCGGATGCTGCGGGCCCGGCAATGTCAGCGGCGGATATTGCTCAGGC
GATGGCGTCGTTGGAGGATGCGGACGATGTGGCTGCGGGCGCGGCGCTGC
AGCGGGAGGCAGATGCGGAGGCGCAGGAGTTTGATGATGAGGGCGGTGGC
GGCGGCGGTGGCGGCGGCGGCGCGGAGGGCGAGGAGGGCGAAGGCGCTCC
GGTCAAACCTGGTGAGCGTGGGTGGATGGACATGGGCGTGAATGATCTTG
TACAGTGA
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