mRNA_1408 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161702
Unique NamemRNA_1408
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A835Z2U3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U3_9STRA)

HSP 1 Score: 538 bits (1385), Expect = 4.560e-193
Identity = 268/273 (98.17%), Postives = 270/273 (98.90%), Query Frame = 1
Query:    1 MSSSDSTDASSSASEGKVQATTRPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHKSN 819
            MSSSDST+ASSSASEG+VQ T RPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTE SAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHKSN
Sbjct:    1 MSSSDSTEASSSASEGRVQETARPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEHSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHKSN 273          
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A835ZBG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG6_9STRA)

HSP 1 Score: 477 bits (1228), Expect = 3.470e-169
Identity = 226/249 (90.76%), Postives = 245/249 (98.39%), Query Frame = 1
Query:   67 RPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHK 813
            RPE+LIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQF+D+PKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSY+F ++K+SPD+++ANCMSYIINI QPTEDSAKGVDIPVFKDHFI+VLEAGTGFMCVKR+V++ MI++YPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSED+AFCRRWRDLGGSV+LNTRCNLMHSGQHV+F NFIKSISHK
Sbjct:   20 RPEILIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFVDNPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYNFKKYKESPDDDMANCMSYIINITQPTEDSAKGVDIPVFKDHFIKVLEAGTGFMCVKRQVLEAMIEAYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDFAFCRRWRDLGGSVFLNTRCNLMHSGQHVYFANFIKSISHK 268          
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A835YZ92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ92_9STRA)

HSP 1 Score: 463 bits (1192), Expect = 9.180e-164
Identity = 219/260 (84.23%), Postives = 245/260 (94.23%), Query Frame = 1
Query:   34 SASEGKVQATTRPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEDS-AKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISH 810
            S S G +    RPEVLIATPAYNGAVTTHYFESM+QLARVA+KEHNIG+TVTTISTESLITRARNMMVAQFMD+PKFTHLLFVDAD+GFPPEAVVDL+KADFPVSACPYPRK+YDF +FK+S ++N+ NCMSYIINI+QP E++  +G+DIPVFKDHFIQVLEAGTGFMCVKREV++ M ++YPELRHKLE+ASYGR+GWLYGLFDTMVEPITRRFLSEDYAFC+RWRDLGGSV+LNTRCNLMHSGQHVFFGNFIKSISH
Sbjct:    2 STSAGTISEVQRPEVLIATPAYNGAVTTHYFESMMQLARVADKEHNIGVTVTTISTESLITRARNMMVAQFMDNPKFTHLLFVDADVGFPPEAVVDLVKADFPVSACPYPRKAYDFKKFKESSEDNVHNCMSYIINIMQPPENADGQGIDIPVFKDHFIQVLEAGTGFMCVKREVIEQMQEAYPELRHKLEIASYGREGWLYGLFDTMVEPITRRFLSEDYAFCKRWRDLGGSVFLNTRCNLMHSGQHVFFGNFIKSISH 261          
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A835Z585_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z585_9STRA)

HSP 1 Score: 317 bits (812), Expect = 1.340e-105
Identity = 150/250 (60.00%), Postives = 192/250 (76.80%), Query Frame = 1
Query:   67 RPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHKS 816
            R EVL+ATP YN +++  YFES+++   VAE  HNIGI VTTISTESLITRARNM  A  +++  F+HL F+D+DIGF PEA++DLI ADF VSACPYPRKSYDFA+FK +  +++  CMSYI+NI   T      V +P+FK HF++V EAGTGFMC+KR V++ M  +YPEL+H+L+    G    L+  FDTM+EP TRR+LSEDYAFCRRW+D+GGSVYLNTR NL HSG H+F G+F+KSI+ K+
Sbjct:   24 RAEVLVATPCYNASLSVQYFESVMRAIAVAEA-HNIGIHVTTISTESLITRARNMQAALLLNNKVFSHLCFIDSDIGFSPEAIIDLIDADFDVSACPYPRKSYDFAKFKAAKTDDMRECMSYILNIFGSTAQVDPTVSLPMFKSHFVKVNEAGTGFMCIKRNVLERMAQAYPELQHRLDTPVEGTGDILHSFFDTMIEPGTRRYLSEDYAFCRRWKDMGGSVYLNTRVNLTHSGNHLFTGDFVKSITQKT 272          
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A2E8NVM1_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E8NVM1_9EURY)

HSP 1 Score: 186 bits (471), Expect = 2.210e-53
Identity = 103/259 (39.77%), Postives = 159/259 (61.39%), Query Frame = 1
Query:   76 VLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLI-------KADFPVSACPYPRKS------YDFARFKKSPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGR-DGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISH 810
            + IATPAY G V   Y ++M+++  +  K++N+  T+ TI+ ESLITR RN + A FM DPKFT ++F+DADI F  E+V+ L             V+   YP+KS      Y   +   +PDE   +  SY++NI   T+D  +   IP+ +D  I V + GTGFM  K++V+Q M D +PEL +K ++ +  + D ++Y LFDT+++P TRR+LSEDY FCRR+++LGG ++++   NL H G ++F GN     ++
Sbjct:   57 LFIATPAYGGLVGEAYLKAMVKVG-IMFKQYNLNFTLCTIANESLITRGRNTLTAMFMSDPKFTDMMFIDADIHFEAESVLKLWAHINNPNNPKVEVAIGSYPKKSINWPQIYQAVKKGATPDEMQLHQGSYVLNI--RTDDKGR---IPL-QDGLIPVYDGGTGFMMYKKQVIQRMFDKWPELHYKNDLNTDPKHDPYMYALFDTLIDPKTRRYLSEDYTFCRRYQELGGQIWMDPSINLDHQGNYLFKGNIANQFTY 308          
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A6P1BCM4_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium uaiense TaxID=2594946 RepID=A0A6P1BCM4_9BRAD)

HSP 1 Score: 177 bits (449), Expect = 2.860e-51
Identity = 97/241 (40.25%), Postives = 142/241 (58.92%), Query Frame = 1
Query:   70 PEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRH--KLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFG 786
            P +L+ATP Y G  TT Y  S++ L      E  +G+ V   S +SL+TRARN +V QF+     THL+F+DADIGF P+ V+ L+K +  V+A  YP K  D+A+ +++     +N  +  ++ +   EDS         +D F  V   GTGF+ ++R V++ M D+YPELRH   +       +   + LFD M++P T+ +LSEDYAFCRRWRDLGG ++L+T   L H+G   F G
Sbjct:    5 PYILVATPTYGGLATTSYITSLLTLQTTC-LELGVGMGVRFFS-DSLVTRARNELVRQFLAHEHATHLMFIDADIGFSPDQVLRLLKFNVDVAAGAYPLKEVDWAKAERAIKAGRSNVQTAALHYVLAWEDSTA----ITARDGFAPVKRIGTGFLLIRRNVIERMCDAYPELRHIAPVYAGHVPENSPRWALFDCMIDPETKEYLSEDYAFCRRWRDLGGEIWLDTFSKLNHTGPVTFTG 239          
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A1Z8S7W8_9FLAO (Uncharacterized protein n=1 Tax=Crocinitomicaceae bacterium TMED45 TaxID=1986728 RepID=A0A1Z8S7W8_9FLAO)

HSP 1 Score: 179 bits (455), Expect = 3.280e-51
Identity = 95/254 (37.40%), Postives = 157/254 (61.81%), Query Frame = 1
Query:   76 VLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFK------KSPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEM---ASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISH 810
            + IATPAY G V   Y ++M+++  +  K + +  T+ TI+ ESLITR RN +V+ FM DPKFT ++F+DADI F  E+++ +   D  +    YP+K  ++   +      +  +E   +  SY++NI   T+D  +   +P+ ++  I V + GTGFM  KR V+Q M+D +PEL +K ++    +Y +  + Y LFDT+++P T+R+LSEDY FCRRW++LGG+++++   NL H G ++F GN     ++
Sbjct:   59 LFIATPAYGGLVGEAYLKAMVRVG-ILFKTYGLNFTLATIANESLITRGRNTLVSMFMSDPKFTDMIFIDADIHFDAESIIRMWAKDVDIVTGAYPKKMVNWKGIRDAVIRGEKEEELHKHQASYVLNI--KTDDGGR---VPM-QNGLIPVYDGGTGFMMFKRSVIQKMMDKWPELWYKNDLNTDPAYNK--YCYALFDTIIDPDTKRYLSEDYTFCRRWQELGGTIWMDPTINLDHQGAYLFNGNISNQFTY 303          
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A158DYX6_9BURK (Uncharacterized protein n=2 Tax=Caballeronia glebae TaxID=1777143 RepID=A0A158DYX6_9BURK)

HSP 1 Score: 177 bits (448), Expect = 4.550e-51
Identity = 108/248 (43.55%), Postives = 145/248 (58.47%), Query Frame = 1
Query:   79 LIATPAYNGAVTTHYFESMIQLARVAEKEHNIGIT--VTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIIN--IIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWL-YGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSIS 807
            L  TP Y G V  ++ +S++ L     K   IG++  V   S ESLITRARN  VA F+ D  FTHL ++D+DIGF  + +  L+ AD  V A  YP KS+DF      P +  A     ++    ++   +S  GV   V  D F++V EA TGFMC+KR V++ MI+  PEL++  +     R   L Y  FD MVEP T R+LSEDYAFCRRWRDLGG V+++T+  L H G + + GNF  SIS
Sbjct:    4 LFMTPCYGGNVAANFAKSVLALNSALWK---IGMSGEVCIRSGESLITRARNEAVAHFLLDASFTHLFWIDSDIGFTVDQIFRLLLADRDVVAGVYPLKSFDF------PAQLAAGLTRQVLTSKFLRYPVNSHDGVSNVVDDDGFLEVSEAPTGFMCIKRSVIETMINRLPELKYVPDGPPNSRTHDLCYRFFDVMVEPATGRYLSEDYAFCRRWRDLGGRVFVDTQSKLSHQGLYTWLGNFSASIS 242          
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A2E3IGL0_9BACT (Uncharacterized protein n=1 Tax=Roseibacillus sp. TaxID=2024856 RepID=A0A2E3IGL0_9BACT)

HSP 1 Score: 179 bits (455), Expect = 5.230e-51
Identity = 100/261 (38.31%), Postives = 161/261 (61.69%), Query Frame = 1
Query:   76 VLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVV---------DLIKADFPVSACPYPRKSYDFARFKK------SPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGR-DGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISH 810
            + IATPAY G V   Y ++M+++  +  K++N+  T+ TI+ ESLITR RN + A FM DPKFT ++F+DADI F  E+V+         +L   +  V A  YP+KS ++ +  +      S +E   +  SY++N+    +       IP+ +D  I V + GTGFM  KREV+Q M+D +P+L +K ++ +  + D ++Y LFDT+++P TRR+LSEDY FCRR+++LGG+++++   NL H G ++F GN     ++
Sbjct:   56 LFIATPAYGGLVGEAYLKAMVKVG-ILFKQYNLNFTLCTIANESLITRGRNTLTAMFMSDPKFTDMMFIDADIHFEAESVIKLWAHLNNPNLEXTEVVVGA--YPKKSINWKQMHQAVKDGASVEEMQHHQGSYVLNMRADNKGR-----IPL-QDGLIPVYDGGTGFMMYKREVIQRMMDKWPDLHYKNDLNTNPKHDPYMYALFDTIIDPTTRRYLSEDYTFCRRYQELGGTIWMDPSINLDHQGNYLFKGNISNQFTY 307          
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A2W5QW53_9CAUL (Uncharacterized protein n=1 Tax=Phenylobacterium zucineum TaxID=284016 RepID=A0A2W5QW53_9CAUL)

HSP 1 Score: 176 bits (446), Expect = 8.820e-51
Identity = 89/250 (35.60%), Postives = 147/250 (58.80%), Query Frame = 1
Query:   67 RPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENI----ANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSI 804
            +P + +A P Y G +T H+ +S++ L + A +E  +G+ V  +  E+LITR R+ + AQF+  P+ THLLF+DADI FPP+ V  L+ +   V A   P K  D+ + +K+ ++ +    A  + Y++  +   ++S +        D F QV   GTGF+ + R+ +Q + D++PELR K+   +         +FDTM+EP T ++LSEDYAFCRRWRDLGG ++ +    L H G   + G+ ++++
Sbjct:    6 KPYIYLAVPCYGGQLTLHFVQSLLTL-KDACRERGVGLHVEMMGGEALITRGRSRLAAQFLAHPEATHLLFIDADIAFPPKTVFRLLDSGKDVIAAVCPLKKIDWGKVRKAVEKGVTDLQAASIGYVVRFLPNPQNSVE------VNDGFAQVAYGGTGFLMIARDAMQRLFDAHPELRAKMRDMADNAAAETVMVFDTMIEPETGQYLSEDYAFCRRWRDLGGEIWADFEARLTHVGHAAYTGSLMQAL 248          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2U3_9STRA4.560e-19398.17Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZBG6_9STRA3.470e-16990.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZ92_9STRA9.180e-16484.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z585_9STRA1.340e-10560.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A2E8NVM1_9EURY2.210e-5339.77Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
A0A6P1BCM4_9BRAD2.860e-5140.25Uncharacterized protein n=1 Tax=Bradyrhizobium uai... [more]
A0A1Z8S7W8_9FLAO3.280e-5137.40Uncharacterized protein n=1 Tax=Crocinitomicaceae ... [more]
A0A158DYX6_9BURK4.550e-5143.55Uncharacterized protein n=2 Tax=Caballeronia gleba... [more]
A0A2E3IGL0_9BACT5.230e-5138.31Uncharacterized protein n=1 Tax=Roseibacillus sp. ... [more]
A0A2W5QW53_9CAUL8.820e-5135.60Uncharacterized protein n=1 Tax=Phenylobacterium z... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:964662..965483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161702|e_gw1.18.6.1
Preferred nameMA20_08330
DescriptionGlycosyl transferase, family 2
COG categoryS
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG1216@1|root,COG1216@2|Bacteria,1R554@1224|Proteobacteria,2U3P6@28211|Alphaproteobacteria,3JUG0@41294|Bradyrhizobiaceae
Evalue3.96e-50
Seed ortholog1380355.JNIJ01000012_gene1162
Hectar predicted targeting categoryother localisation
TranscriptId162024
TrackFilteredModels1
ProteinId161702
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161702gene_1408Tribonema minus UTEX_B_3156 geneContig_18 964662..965483 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1408_1exon_1408_1Tribonema minus UTEX_B_3156 exonContig_18 964662..965483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1408CDS_1408Tribonema minus UTEX_B_3156 CDSContig_18 964662..965483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161702Trimin1|161702|e_gw1.18.6.1Tribonema minus UTEX_B_3156 polypeptideContig_18 964662..965483 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1408 ID=mRNA_1408|Name=jgi.p|Trimin1|161702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_18:964662..965483- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGCTCTGACAGTACGGACGCCAGCAGCAGCGCTTCTGAGGGCAA
GGTGCAGGCAACCACACGTCCCGAAGTCTTGATTGCTACACCTGCATACA
ATGGAGCCGTGACTACACACTATTTTGAGAGCATGATTCAGCTTGCACGA
GTAGCAGAAAAGGAGCACAACATCGGCATCACTGTCACAACTATTTCCAC
CGAGTCCCTAATCACACGTGCGCGCAACATGATGGTGGCGCAGTTTATGG
ATGACCCCAAGTTCACTCACTTGCTGTTTGTCGACGCAGACATTGGCTTT
CCTCCTGAAGCGGTGGTAGATCTCATCAAAGCTGACTTCCCTGTCTCTGC
GTGCCCGTACCCTCGCAAGAGCTATGATTTCGCCAGGTTCAAGAAATCAC
CTGACGAGAACATTGCAAACTGCATGTCTTACATCATCAACATCATTCAG
CCCACTGAAGACTCAGCCAAAGGCGTTGACATTCCCGTGTTCAAGGACCA
TTTCATTCAGGTACTTGAGGCGGGTACAGGTTTCATGTGTGTAAAGCGCG
AGGTGGTTCAAATGATGATAGATTCTTATCCAGAACTCCGCCACAAGTTG
GAGATGGCGAGTTATGGTAGGGATGGTTGGCTGTATGGTCTCTTTGACAC
AATGGTGGAACCTATCACCAGGCGCTTCCTCAGCGAGGACTATGCATTCT
GTAGGCGATGGCGTGACCTGGGTGGATCAGTGTACCTCAACACGCGCTGC
AACCTCATGCACAGCGGCCAACACGTGTTCTTTGGCAACTTCATCAAGTC
AATCAGCCACAAATCGAATTAG
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protein sequence of jgi.p|Trimin1|161702

>Trimin1|161702|e_gw1.18.6.1 ID=Trimin1|161702|e_gw1.18.6.1|Name=jgi.p|Trimin1|161702|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=274bp
MSSSDSTDASSSASEGKVQATTRPEVLIATPAYNGAVTTHYFESMIQLAR
VAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGF
PPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQ
PTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKL
EMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRC
NLMHSGQHVFFGNFIKSISHKSN*
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mRNA from alignment at Contig_18:964662..965483-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1408 ID=mRNA_1408|Name=jgi.p|Trimin1|161702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_18:964662..965483- (Tribonema minus UTEX_B_3156 )
ATGAGCAGCTCTGACAGTACGGACGCCAGCAGCAGCGCTTCTGAGGGCAA GGTGCAGGCAACCACACGTCCCGAAGTCTTGATTGCTACACCTGCATACA ATGGAGCCGTGACTACACACTATTTTGAGAGCATGATTCAGCTTGCACGA GTAGCAGAAAAGGAGCACAACATCGGCATCACTGTCACAACTATTTCCAC CGAGTCCCTAATCACACGTGCGCGCAACATGATGGTGGCGCAGTTTATGG ATGACCCCAAGTTCACTCACTTGCTGTTTGTCGACGCAGACATTGGCTTT CCTCCTGAAGCGGTGGTAGATCTCATCAAAGCTGACTTCCCTGTCTCTGC GTGCCCGTACCCTCGCAAGAGCTATGATTTCGCCAGGTTCAAGAAATCAC CTGACGAGAACATTGCAAACTGCATGTCTTACATCATCAACATCATTCAG CCCACTGAAGACTCAGCCAAAGGCGTTGACATTCCCGTGTTCAAGGACCA TTTCATTCAGGTACTTGAGGCGGGTACAGGTTTCATGTGTGTAAAGCGCG AGGTGGTTCAAATGATGATAGATTCTTATCCAGAACTCCGCCACAAGTTG GAGATGGCGAGTTATGGTAGGGATGGTTGGCTGTATGGTCTCTTTGACAC AATGGTGGAACCTATCACCAGGCGCTTCCTCAGCGAGGACTATGCATTCT GTAGGCGATGGCGTGACCTGGGTGGATCAGTGTACCTCAACACGCGCTGC AACCTCATGCACAGCGGCCAACACGTGTTCTTTGGCAACTTCATCAAGTC AATCAGCCACAAATCGAATTAG
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Coding sequence (CDS) from alignment at Contig_18:964662..965483-

>mRNA_1408 ID=mRNA_1408|Name=jgi.p|Trimin1|161702|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=822bp|location=Sequence derived from alignment at Contig_18:964662..965483- (Tribonema minus UTEX_B_3156 )
ATGAGCAGCTCTGACAGTACGGACGCCAGCAGCAGCGCTTCTGAGGGCAA
GGTGCAGGCAACCACACGTCCCGAAGTCTTGATTGCTACACCTGCATACA
ATGGAGCCGTGACTACACACTATTTTGAGAGCATGATTCAGCTTGCACGA
GTAGCAGAAAAGGAGCACAACATCGGCATCACTGTCACAACTATTTCCAC
CGAGTCCCTAATCACACGTGCGCGCAACATGATGGTGGCGCAGTTTATGG
ATGACCCCAAGTTCACTCACTTGCTGTTTGTCGACGCAGACATTGGCTTT
CCTCCTGAAGCGGTGGTAGATCTCATCAAAGCTGACTTCCCTGTCTCTGC
GTGCCCGTACCCTCGCAAGAGCTATGATTTCGCCAGGTTCAAGAAATCAC
CTGACGAGAACATTGCAAACTGCATGTCTTACATCATCAACATCATTCAG
CCCACTGAAGACTCAGCCAAAGGCGTTGACATTCCCGTGTTCAAGGACCA
TTTCATTCAGGTACTTGAGGCGGGTACAGGTTTCATGTGTGTAAAGCGCG
AGGTGGTTCAAATGATGATAGATTCTTATCCAGAACTCCGCCACAAGTTG
GAGATGGCGAGTTATGGTAGGGATGGTTGGCTGTATGGTCTCTTTGACAC
AATGGTGGAACCTATCACCAGGCGCTTCCTCAGCGAGGACTATGCATTCT
GTAGGCGATGGCGTGACCTGGGTGGATCAGTGTACCTCAACACGCGCTGC
AACCTCATGCACAGCGGCCAACACGTGTTCTTTGGCAACTTCATCAAGTC
AATCAGCCACAAATCGAATTAG
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