mRNA_1408 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A835Z2U3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U3_9STRA) HSP 1 Score: 538 bits (1385), Expect = 4.560e-193 Identity = 268/273 (98.17%), Postives = 270/273 (98.90%), Query Frame = 1 Query: 1 MSSSDSTDASSSASEGKVQATTRPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHKSN 819 MSSSDST+ASSSASEG+VQ T RPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTE SAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHKSN Sbjct: 1 MSSSDSTEASSSASEGRVQETARPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEHSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHKSN 273
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A835ZBG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG6_9STRA) HSP 1 Score: 477 bits (1228), Expect = 3.470e-169 Identity = 226/249 (90.76%), Postives = 245/249 (98.39%), Query Frame = 1 Query: 67 RPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHK 813 RPE+LIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQF+D+PKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSY+F ++K+SPD+++ANCMSYIINI QPTEDSAKGVDIPVFKDHFI+VLEAGTGFMCVKR+V++ MI++YPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSED+AFCRRWRDLGGSV+LNTRCNLMHSGQHV+F NFIKSISHK Sbjct: 20 RPEILIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFVDNPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYNFKKYKESPDDDMANCMSYIINITQPTEDSAKGVDIPVFKDHFIKVLEAGTGFMCVKRQVLEAMIEAYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDFAFCRRWRDLGGSVFLNTRCNLMHSGQHVYFANFIKSISHK 268
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A835YZ92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ92_9STRA) HSP 1 Score: 463 bits (1192), Expect = 9.180e-164 Identity = 219/260 (84.23%), Postives = 245/260 (94.23%), Query Frame = 1 Query: 34 SASEGKVQATTRPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEDS-AKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISH 810 S S G + RPEVLIATPAYNGAVTTHYFESM+QLARVA+KEHNIG+TVTTISTESLITRARNMMVAQFMD+PKFTHLLFVDAD+GFPPEAVVDL+KADFPVSACPYPRK+YDF +FK+S ++N+ NCMSYIINI+QP E++ +G+DIPVFKDHFIQVLEAGTGFMCVKREV++ M ++YPELRHKLE+ASYGR+GWLYGLFDTMVEPITRRFLSEDYAFC+RWRDLGGSV+LNTRCNLMHSGQHVFFGNFIKSISH Sbjct: 2 STSAGTISEVQRPEVLIATPAYNGAVTTHYFESMMQLARVADKEHNIGVTVTTISTESLITRARNMMVAQFMDNPKFTHLLFVDADVGFPPEAVVDLVKADFPVSACPYPRKAYDFKKFKESSEDNVHNCMSYIINIMQPPENADGQGIDIPVFKDHFIQVLEAGTGFMCVKREVIEQMQEAYPELRHKLEIASYGREGWLYGLFDTMVEPITRRFLSEDYAFCKRWRDLGGSVFLNTRCNLMHSGQHVFFGNFIKSISH 261
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A835Z585_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z585_9STRA) HSP 1 Score: 317 bits (812), Expect = 1.340e-105 Identity = 150/250 (60.00%), Postives = 192/250 (76.80%), Query Frame = 1 Query: 67 RPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHKS 816 R EVL+ATP YN +++ YFES+++ VAE HNIGI VTTISTESLITRARNM A +++ F+HL F+D+DIGF PEA++DLI ADF VSACPYPRKSYDFA+FK + +++ CMSYI+NI T V +P+FK HF++V EAGTGFMC+KR V++ M +YPEL+H+L+ G L+ FDTM+EP TRR+LSEDYAFCRRW+D+GGSVYLNTR NL HSG H+F G+F+KSI+ K+ Sbjct: 24 RAEVLVATPCYNASLSVQYFESVMRAIAVAEA-HNIGIHVTTISTESLITRARNMQAALLLNNKVFSHLCFIDSDIGFSPEAIIDLIDADFDVSACPYPRKSYDFAKFKAAKTDDMRECMSYILNIFGSTAQVDPTVSLPMFKSHFVKVNEAGTGFMCIKRNVLERMAQAYPELQHRLDTPVEGTGDILHSFFDTMIEPGTRRYLSEDYAFCRRWKDMGGSVYLNTRVNLTHSGNHLFTGDFVKSITQKT 272
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A2E8NVM1_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E8NVM1_9EURY) HSP 1 Score: 186 bits (471), Expect = 2.210e-53 Identity = 103/259 (39.77%), Postives = 159/259 (61.39%), Query Frame = 1 Query: 76 VLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLI-------KADFPVSACPYPRKS------YDFARFKKSPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGR-DGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISH 810 + IATPAY G V Y ++M+++ + K++N+ T+ TI+ ESLITR RN + A FM DPKFT ++F+DADI F E+V+ L V+ YP+KS Y + +PDE + SY++NI T+D + IP+ +D I V + GTGFM K++V+Q M D +PEL +K ++ + + D ++Y LFDT+++P TRR+LSEDY FCRR+++LGG ++++ NL H G ++F GN ++ Sbjct: 57 LFIATPAYGGLVGEAYLKAMVKVG-IMFKQYNLNFTLCTIANESLITRGRNTLTAMFMSDPKFTDMMFIDADIHFEAESVLKLWAHINNPNNPKVEVAIGSYPKKSINWPQIYQAVKKGATPDEMQLHQGSYVLNI--RTDDKGR---IPL-QDGLIPVYDGGTGFMMYKKQVIQRMFDKWPELHYKNDLNTDPKHDPYMYALFDTLIDPKTRRYLSEDYTFCRRYQELGGQIWMDPSINLDHQGNYLFKGNIANQFTY 308
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A6P1BCM4_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium uaiense TaxID=2594946 RepID=A0A6P1BCM4_9BRAD) HSP 1 Score: 177 bits (449), Expect = 2.860e-51 Identity = 97/241 (40.25%), Postives = 142/241 (58.92%), Query Frame = 1 Query: 70 PEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRH--KLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFG 786 P +L+ATP Y G TT Y S++ L E +G+ V S +SL+TRARN +V QF+ THL+F+DADIGF P+ V+ L+K + V+A YP K D+A+ +++ +N + ++ + EDS +D F V GTGF+ ++R V++ M D+YPELRH + + + LFD M++P T+ +LSEDYAFCRRWRDLGG ++L+T L H+G F G Sbjct: 5 PYILVATPTYGGLATTSYITSLLTLQTTC-LELGVGMGVRFFS-DSLVTRARNELVRQFLAHEHATHLMFIDADIGFSPDQVLRLLKFNVDVAAGAYPLKEVDWAKAERAIKAGRSNVQTAALHYVLAWEDSTA----ITARDGFAPVKRIGTGFLLIRRNVIERMCDAYPELRHIAPVYAGHVPENSPRWALFDCMIDPETKEYLSEDYAFCRRWRDLGGEIWLDTFSKLNHTGPVTFTG 239
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A1Z8S7W8_9FLAO (Uncharacterized protein n=1 Tax=Crocinitomicaceae bacterium TMED45 TaxID=1986728 RepID=A0A1Z8S7W8_9FLAO) HSP 1 Score: 179 bits (455), Expect = 3.280e-51 Identity = 95/254 (37.40%), Postives = 157/254 (61.81%), Query Frame = 1 Query: 76 VLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFK------KSPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEM---ASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISH 810 + IATPAY G V Y ++M+++ + K + + T+ TI+ ESLITR RN +V+ FM DPKFT ++F+DADI F E+++ + D + YP+K ++ + + +E + SY++NI T+D + +P+ ++ I V + GTGFM KR V+Q M+D +PEL +K ++ +Y + + Y LFDT+++P T+R+LSEDY FCRRW++LGG+++++ NL H G ++F GN ++ Sbjct: 59 LFIATPAYGGLVGEAYLKAMVRVG-ILFKTYGLNFTLATIANESLITRGRNTLVSMFMSDPKFTDMIFIDADIHFDAESIIRMWAKDVDIVTGAYPKKMVNWKGIRDAVIRGEKEEELHKHQASYVLNI--KTDDGGR---VPM-QNGLIPVYDGGTGFMMFKRSVIQKMMDKWPELWYKNDLNTDPAYNK--YCYALFDTIIDPDTKRYLSEDYTFCRRWQELGGTIWMDPTINLDHQGAYLFNGNISNQFTY 303
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A158DYX6_9BURK (Uncharacterized protein n=2 Tax=Caballeronia glebae TaxID=1777143 RepID=A0A158DYX6_9BURK) HSP 1 Score: 177 bits (448), Expect = 4.550e-51 Identity = 108/248 (43.55%), Postives = 145/248 (58.47%), Query Frame = 1 Query: 79 LIATPAYNGAVTTHYFESMIQLARVAEKEHNIGIT--VTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIIN--IIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWL-YGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSIS 807 L TP Y G V ++ +S++ L K IG++ V S ESLITRARN VA F+ D FTHL ++D+DIGF + + L+ AD V A YP KS+DF P + A ++ ++ +S GV V D F++V EA TGFMC+KR V++ MI+ PEL++ + R L Y FD MVEP T R+LSEDYAFCRRWRDLGG V+++T+ L H G + + GNF SIS Sbjct: 4 LFMTPCYGGNVAANFAKSVLALNSALWK---IGMSGEVCIRSGESLITRARNEAVAHFLLDASFTHLFWIDSDIGFTVDQIFRLLLADRDVVAGVYPLKSFDF------PAQLAAGLTRQVLTSKFLRYPVNSHDGVSNVVDDDGFLEVSEAPTGFMCIKRSVIETMINRLPELKYVPDGPPNSRTHDLCYRFFDVMVEPATGRYLSEDYAFCRRWRDLGGRVFVDTQSKLSHQGLYTWLGNFSASIS 242
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A2E3IGL0_9BACT (Uncharacterized protein n=1 Tax=Roseibacillus sp. TaxID=2024856 RepID=A0A2E3IGL0_9BACT) HSP 1 Score: 179 bits (455), Expect = 5.230e-51 Identity = 100/261 (38.31%), Postives = 161/261 (61.69%), Query Frame = 1 Query: 76 VLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVV---------DLIKADFPVSACPYPRKSYDFARFKK------SPDENIANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGR-DGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISH 810 + IATPAY G V Y ++M+++ + K++N+ T+ TI+ ESLITR RN + A FM DPKFT ++F+DADI F E+V+ +L + V A YP+KS ++ + + S +E + SY++N+ + IP+ +D I V + GTGFM KREV+Q M+D +P+L +K ++ + + D ++Y LFDT+++P TRR+LSEDY FCRR+++LGG+++++ NL H G ++F GN ++ Sbjct: 56 LFIATPAYGGLVGEAYLKAMVKVG-ILFKQYNLNFTLCTIANESLITRGRNTLTAMFMSDPKFTDMMFIDADIHFEAESVIKLWAHLNNPNLEXTEVVVGA--YPKKSINWKQMHQAVKDGASVEEMQHHQGSYVLNMRADNKGR-----IPL-QDGLIPVYDGGTGFMMYKREVIQRMMDKWPDLHYKNDLNTNPKHDPYMYALFDTIIDPTTRRYLSEDYTFCRRYQELGGTIWMDPSINLDHQGNYLFKGNISNQFTY 307
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Match: A0A2W5QW53_9CAUL (Uncharacterized protein n=1 Tax=Phenylobacterium zucineum TaxID=284016 RepID=A0A2W5QW53_9CAUL) HSP 1 Score: 176 bits (446), Expect = 8.820e-51 Identity = 89/250 (35.60%), Postives = 147/250 (58.80%), Query Frame = 1 Query: 67 RPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENI----ANCMSYIINIIQPTEDSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSI 804 +P + +A P Y G +T H+ +S++ L + A +E +G+ V + E+LITR R+ + AQF+ P+ THLLF+DADI FPP+ V L+ + V A P K D+ + +K+ ++ + A + Y++ + ++S + D F QV GTGF+ + R+ +Q + D++PELR K+ + +FDTM+EP T ++LSEDYAFCRRWRDLGG ++ + L H G + G+ ++++ Sbjct: 6 KPYIYLAVPCYGGQLTLHFVQSLLTL-KDACRERGVGLHVEMMGGEALITRGRSRLAAQFLAHPEATHLLFIDADIAFPPKTVFRLLDSGKDVIAAVCPLKKIDWGKVRKAVEKGVTDLQAASIGYVVRFLPNPQNSVE------VNDGFAQVAYGGTGFLMIARDAMQRLFDAHPELRAKMRDMADNAAAETVMVFDTMIEPETGQYLSEDYAFCRRWRDLGGEIWADFEARLTHVGHAAYTGSLMQAL 248 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161702 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1408 ID=mRNA_1408|Name=jgi.p|Trimin1|161702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_18:964662..965483- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGCAGCTCTGACAGTACGGACGCCAGCAGCAGCGCTTCTGAGGGCAAback to top protein sequence of jgi.p|Trimin1|161702 >Trimin1|161702|e_gw1.18.6.1 ID=Trimin1|161702|e_gw1.18.6.1|Name=jgi.p|Trimin1|161702|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=274bp MSSSDSTDASSSASEGKVQATTRPEVLIATPAYNGAVTTHYFESMIQLARback to top mRNA from alignment at Contig_18:964662..965483- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1408 ID=mRNA_1408|Name=jgi.p|Trimin1|161702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_18:964662..965483- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:964662..965483- >mRNA_1408 ID=mRNA_1408|Name=jgi.p|Trimin1|161702|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=822bp|location=Sequence derived from alignment at Contig_18:964662..965483- (Tribonema minus UTEX_B_3156 )back to top |