mRNA_14023 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176112
Unique NamemRNA_14023
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|176112 vs. uniprot
Match: A0A835ZBL3_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL3_9STRA)

HSP 1 Score: 583 bits (1502), Expect = 2.680e-210
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 1
Query:    1 MPPSARFPLTAAPAGHQRRRRPLPLSRLTRRNCGNQCEPAAPPPPPLAQVPLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGXXXXXPPQHDSGDFLPADAFGGARKGYVFTRGAHGQGYYRDAPPLLAAVERRLPLRVVVGDFLEVTPAEIGTFDAAWDRGSLVALPPGARARYAATLAALLRDGARVLLVTSHFDQSVRPGPPFVVSHAELEALYGPLGFTVELLSSRDASAEYKGGPWDAVSSIVENCYLLTKRGRAAQRRWYKPWSWFRG 873
            MPPSARFPLTAAPAGHQRRRRPLPLSRLTRRNCGNQCEPAAPPPPPLAQVPLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGXXXXXPPQHDSGDFLPADAFGGARKGYVFTRGAHGQGYYRDAPPLLAAVERRLPLRVVVGDFLEVTPAEIGTFDAAWDRGSLVALPPGARARYAATLAALLRDGARVLLVTSHFDQSVRPGPPFVVSHAELEALYGPLGFTVELLSSRDASAEYKGGPWDAVSSIVENCYLLTKRGRAAQRRWYKPWSWFRG
Sbjct:    1 MPPSARFPLTAAPAGHQRRRRPLPLSRLTRRNCGNQCEPAAPPPPPLAQVPLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGXXXXXPPQHDSGDFLPADAFGGARKGYVFTRGAHGQGYYRDAPPLLAAVERRLPLRVVVGDFLEVTPAEIGTFDAAWDRGSLVALPPGARARYAATLAALLRDGARVLLVTSHFDQSVRPGPPFVVSHAELEALYGPLGFTVELLSSRDASAEYKGGPWDAVSSIVENCYLLTKRGRAAQRRWYKPWSWFRG 291          
BLAST of jgi.p|Trimin1|176112 vs. uniprot
Match: D7FR49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR49_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 6.540e-51
Identity = 95/206 (46.12%), Postives = 124/206 (60.19%), Query Frame = 1
Query:  148 VPLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGXXXXXPPQHDSGDFLPADAFGGARKGYVFTRGAHGQGYYRDAPPLLAAVERRLPLRVVVGDFLEVTPAEIGTFDAAWDRGSLVALPPGARARYAATLAALLRDGARVLLVTSHFDQSVRPGPPFVVSHAELEALYG-PLGFTVELLSSRDASAEYK 762
            VPLCGK+VD+PYLA++GHE VGV+GVEAAVW LQR++WL F               P      F+PA  F   R GYVF     G GYY D   +    + R  + VVV DFL + P +IG FD  WDRG+LVAL P  R  Y +T  ++L  G ++LL T  +DQ+ + GPP+ +  AE++ LYG  LG+ +E LSS DA  EY+
Sbjct:   17 VPLCGKTVDMPYLAQKGHEVVGVDGVEAAVWQLQRDSWLKFETFQAEPSAESSGRRP-----GFIPAPTFEKRRSGYVFKTDTLGTGYYLDKKAVKWFRDTRKRISVVVSDFLFLAPGDIGMFDRVWDRGALVALRPEDREEYVSTCDSVLEPGGKILLATLVYDQNAKKGPPYSIPLAEVQRLYGGKLGYAIETLSSVDAREEYQ 217          
BLAST of jgi.p|Trimin1|176112 vs. uniprot
Match: A0A8J6CB01_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CB01_DIALT)

HSP 1 Score: 154 bits (388), Expect = 8.020e-41
Identity = 104/277 (37.55%), Postives = 139/277 (50.18%), Query Frame = 1
Query:  148 VPLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGXXXXXPPQHDSGDFLPADAFGGARKGYVFTRGAHGQGYYRDAP---PLLAAVE--------------------------------RRLPLRVVVGDFLEVTPAEIGTFDAAWDRGSLVALPPGARARYAATLAALLRDGARVLLVTSHFDQSVRPGPPFVVSHAELEALYGPLGFTVELLSSRDASAEYK---GGPWDAVSSIVENCYLLTKRGRAAQRRWYKPWSW 864
            VPLCGK+VD+P+LA+ GHE VGVEGV  A  A  ++       V    G       P     DF+ ADAF G R GYVFT      GY+RD P   P  AA +                                +R  + + + D+ +V   EIG+F  AWDRG LVA+PP AR  YA+ L ALL   ARVLL    +DQ V PGPPF ++  ++ AL+    ++V +L+  DASAE++   G PW+ +  + E   LL KR     R W++   W
Sbjct:   79 VPLCGKTVDMPFLARAGHEVVGVEGVPLAAEAFSKDQ-PHLRMVRCAPGAPAGAAAPA----DFIAADAFAGPRAGYVFTTRDGKLGYHRDRPQPTPAAAATQPAAAPAQRAALGERADWLSTGGTAAARADQQAQRGTVWLAIADWFDVRRDEIGSFGRAWDRGGLVAVPPAARPAYASALDALLEPRARVLLSCFDYDQQVAPGPPFALAVDDVRALFPR--YSVRVLARTDASAEFRKRVGTPWEKIERMDELALLLVKR-----RPWWRRVLW 343          
BLAST of jgi.p|Trimin1|176112 vs. uniprot
Match: A0A813H8E6_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H8E6_POLGL)

HSP 1 Score: 138 bits (348), Expect = 2.680e-34
Identity = 93/247 (37.65%), Postives = 131/247 (53.04%), Query Frame = 1
Query:  148 VPLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGXXXXXPPQHDSG-DFLPADAFGGARKGYVFTRGAHGQGYYRDAPPLLA----AVERRLPLRVVVGDFLEVTPAEI--------GTFDAAWDRGSLVALPPGARARYAATLAALLRDGARVLLVTSHFDQSVRP-------GPPFVVSHAELEALYGPLGFTVELLSSRDASAEYKGGPWDAVSSIVENCYLLTKRGR 828
            VPLCGK+ D+P+L + G+  VGVEGV  A+   + E+ +   +    R           + G  F P+D F G+R G VF +G  G GYYRD P + +    A ++ LPL V+ GD  +VTP  I        G FD A+DRGSLVA+PP +R +Y +TL+ L+R G R+LLV   +DQ   P        PPF V+   + AL+    ++VE+L   D   +    P      + E  YL+ KRGR
Sbjct:  146 VPLCGKTFDMPFLCENGYGVVGVEGVPRAIMEFRAEHRMRV-KGFKSRDILSPGEKGSWEKGVSFGPSDQFAGSRFGQVFKKGEQGIGYYRDKPAVWSGKVNAGKKSLPLHVIEGDMFDVTPQMISAATFVKDGRFDLAFDRGSLVAIPPESREQYVSTLSQLIRPGGRILLVALDYDQEKVPYNSKRNAPPPFSVTGEHVRALFPAGAWSVEVLE--DHVEDMSSQPAFKDVKVREVVYLIEKRGR 389          
BLAST of jgi.p|Trimin1|176112 vs. uniprot
Match: A0A813LU63_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LU63_POLGL)

HSP 1 Score: 130 bits (326), Expect = 3.890e-32
Identity = 84/215 (39.07%), Postives = 118/215 (54.88%), Query Frame = 1
Query:  148 VPLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGXXXXXPPQHDSG-DFLPADAFGGARKGYVFTRGAHGQGYYRDAPPLLA----AVERRLPLRVVVGDFLEVTPAEI--------GTFDAAWDRGSLVALPPGARARYAATLAALLRDGARVLLVTSHFDQSVRP-------GPPFVVSHAELEALYGPLGFTVELL 732
            VPLCGK+ D+P+L + G+  VGVEGV  A+   + E+ +   +    R           + G  F P+D F G+R G VF +G  G GYYRD P + +    A ++ LPL V+ GD  +VTP  I        G FD A+DRGSLVA+PP +R +Y +TL+ L+R G R+LLV   +DQ   P        PPF V+   + AL+    + VE+L
Sbjct:   88 VPLCGKTFDMPFLCENGYGVVGVEGVPRAIMEFRAEHRMRV-KGFKSRDILSPGEKGSWEKGVSFGPSDQFAGSRFGQVFKKGEQGIGYYRDKPAVWSGKVNAGKKSLPLHVIEGDMFDVTPQMISAATFVKDGRFDLAFDRGSLVAIPPESREQYVSTLSQLIRPGGRILLVALDYDQEKVPYNSKRNAPPPFSVTGEHVRALFPAGSWCVEVL 301          
BLAST of jgi.p|Trimin1|176112 vs. uniprot
Match: A0A812PPH7_9DINO (Tpm protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812PPH7_9DINO)

HSP 1 Score: 119 bits (298), Expect = 1.170e-28
Identity = 82/231 (35.50%), Postives = 112/231 (48.48%), Query Frame = 1
Query:  130 PPPLAQVPLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGXXXXXPPQ--HDSGDFLPADAFGGARKGYVFTRGAHGQGYYRDAPPLLAAV----ERRLPLRVVVGDFLEVTP--------AEIGTFDAAWDRGSLVALPPGARARYAATLAALLRDGARVLLVTSHFDQSVRP-------GPPFVVSHAELEALYGPLGFTVELLSSRDASAEY 759
            P P   VPLCGKSVD+PYL + G   VGVEG+  A+   + E+ +   RV   +         Q   +   F PA  F GAR G  F  G  G GYY + P +         R  PL ++ GD  EVTP        A  G FD  +D  +LV+LPP    +YAA L++LLR G R+LL+   +DQ   P        PPF V+   L+ L+    ++V +L +     E+
Sbjct:   10 PLPKVLVPLCGKSVDMPYLCELGFGVVGVEGIPRAILEFKAEHQI---RVKGMKSKLPFAKDEQGWREGTTFQPAAQFAGARSGQSFKTGDQGLGYYSERPAVWRGKVNLGRRHAPLHLIEGDMFEVTPELVAASTFATDGRFDLVYDCDALVSLPPDCWKQYAAGLSSLLRVGGRILLIVVQYDQGKLPYARNRINPPPFSVTRENLKGLFPDSSWSVTMLETEPCDEEF 237          
BLAST of jgi.p|Trimin1|176112 vs. uniprot
Match: A0A813BSC5_9DINO (Tpm protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813BSC5_9DINO)

HSP 1 Score: 116 bits (291), Expect = 1.390e-26
Identity = 79/225 (35.11%), Postives = 112/225 (49.78%), Query Frame = 1
Query:  148 VPLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGXXXXXPPQ--HDSGDFLPADAFGGARKGYVFTRGAHGQGYYRDAPPLLAAV----ERRLPLRVVVGDFLEVTPAEI--------GTFDAAWDRGSLVALPPGARARYAATLAALLRDGARVLLVTSHFDQSVRP-------GPPFVVSHAELEALYGPLGFTVELLSSRDASAEY 759
            VPLCGKSVD+PYL + G   VGVEG+  A+   + E+ +   RV   +         Q   +   F PA  F GAR G  F  G  G GYY + P +         R +PL ++ GD LEVTP  +        G FD  +D  +LV+LPP +  +YAA L++LLR G R+LLV   +DQ   P        PPF V+   ++ L+    ++V  L +     ++
Sbjct:   79 VPLCGKSVDMPYLCELGFGVVGVEGIPRAILEFKAEHQI---RVKGMKSKLPFAKDEQGWREGTTFHPASQFAGARSGQSFKTGDQGLGYYSERPAVWRGKVNLGRRHVPLHLIEGDMLEVTPELVAASTFVTDGRFDLVYDCDALVSLPPDSWKQYAAGLSSLLRVGGRILLVVVQYDQDKLPYARNRINPPPFSVTREHIKGLFPDSCWSVSTLETEPCDEDF 300          
BLAST of jgi.p|Trimin1|176112 vs. uniprot
Match: A0A7S2MYV9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2MYV9_9DINO)

HSP 1 Score: 111 bits (278), Expect = 5.270e-26
Identity = 72/175 (41.14%), Postives = 92/175 (52.57%), Query Frame = 1
Query:  115 PAAPP----PPPLAQVPLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGXXXXXPPQHDSGDFLPADAFGGARKGYVFTRGAHGQGYYRDAPPLLAAVERR-----LPLRVVVGDFLEVTPA--------EIGTFDAAWDRGSLVALPPGARARYAATL 588
            PA PP    P     VPLCGKS+D+P+L ++G   VGVEGV   +  L+ E+     +    R           ++ DF PA+AF G R GYVFT G  G GYY D+P +     R      +P  ++ GD  +VTP         E G FDA +DR SLVA+PP AR  YAATL
Sbjct:   43 PATPPKADAPTLSVLVPLCGKSIDMPFLCEQGFRVVGVEGVLRPILELRAEH-RQRLKGFKARNVLSHGADGWAETVDFQPAEAFQGRRPGYVFTTGDRGLGYYADSPAVFRGTVRAGNRTTVPFEILQGDMFQVTPELIRVATYEERGQFDAIYDRSSLVAIPPSAREEYAATL 216          
BLAST of jgi.p|Trimin1|176112 vs. uniprot
Match: A0A1Q9F2I6_SYMMI (Zeaxanthin epoxidase, chloroplastic n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9F2I6_SYMMI)

HSP 1 Score: 117 bits (292), Expect = 1.460e-25
Identity = 81/238 (34.03%), Postives = 116/238 (48.74%), Query Frame = 1
Query:  148 VPLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGXXXXXPPQ--HDSGDFLPADAFGGARKGYVFTRGAHGQGYYRDAPPLLAAV----ERRLPLRVVVGDFLEVTPAEI--------GTFDAAWDRGSLVALPPGARARYAATLAALLRDGARVLLVTSHFDQSVRP-------GPPFVVSHAELEALYGPLGFTVELLSSRDASAEYKGGPWDAVSSIVE 798
            VPLCGKSVD+PYL + G   VGVEG+  A+   + E+ +   RV   +         Q   +   F PA  F GAR G  F  G  G GYY + P +         R +PL ++ GD LEVTP  +        G FD  +D  +LV+LPP    +YAA L++LLR G R+LLV   +DQ   P        PPF V+   ++ L+    ++V  L +     ++     + + S+ E
Sbjct:  161 VPLCGKSVDMPYLCELGFGVVGVEGIPRAILEFKAEHQI---RVKGMKSKLPFAKDEQGWREGTTFHPASQFAGARSGQSFKTGDQGLGYYSERPAVWRGKVNLGRRHVPLHLIEGDMLEVTPELVAASTFVTDGRFDLVYDCDALVSLPPDCWKQYAAGLSSLLRVGGRILLVVVQYDQDKLPYARNRINPPPFSVTREHIKGLFPDSRWSVSTLETEPCDEDFARYLENRLRSLTE 395          
BLAST of jgi.p|Trimin1|176112 vs. uniprot
Match: A0A7S1PN57_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1PN57_ALECA)

HSP 1 Score: 110 bits (274), Expect = 6.280e-25
Identity = 92/239 (38.49%), Postives = 116/239 (48.54%), Query Frame = 1
Query:  136 PLAQVPLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGXXXXXPPQHDSGDFLPADAFGGARKGYVFTRGAHGQGYYRDAPPLLAAVERRLPLRVVVGDFLEVTPAE---IGTFDAAWDRGSLVALPPGARARYAATLAALLRDGARVLLVTSHFDQSVRP--GPPFVVSHAELEALYGPLGFTVELLSSRDASAEYKGGPWDAVSSIVENCYLLTKR-GRAA 834
            P    PLCGK+VD+P+LA +G+  VGVEG+E A+ A   E+    T  LVP        P ++ S   L                   G+G    AP L            V GDFL +  AE   +  FDAA+DRG LVA+ PG R RYA  LAALLR G R+LLVT   D       GPPF V+  E+ AL+    F V LL   D  A  +G      +   E  YLLT++ GR+A
Sbjct:   60 PRVLFPLCGKTVDMPFLASQGYRVVGVEGIEDALRAFAAEH--GATGQLVPVALPKELDPERYRSYAVLLKP----------------GEGKPMPAPVLF-----------VRGDFLALGSAEAEALVPFDAAFDRGGLVAVQPGDRPRYAQALAALLRPGGRLLLVTVEHDPFANGNLGPPFEVTEKEVSALFAG-DFEVRLLKREDRYAVDEGMRARGCTRFFECGYLLTRKDGRSA 268          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176112 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBL3_9STRA2.680e-210100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
D7FR49_ECTSI6.540e-5146.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J6CB01_DIALT8.020e-4137.55Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A813H8E6_POLGL2.680e-3437.65Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813LU63_POLGL3.890e-3239.07Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A812PPH7_9DINO1.170e-2835.50Tpm protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxI... [more]
A0A813BSC5_9DINO1.390e-2635.11Tpm protein n=1 Tax=Symbiodinium necroappetens Tax... [more]
A0A7S2MYV9_9DINO5.270e-2641.14Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A1Q9F2I6_SYMMI1.460e-2534.03Zeaxanthin epoxidase, chloroplastic n=3 Tax=Symbio... [more]
A0A7S1PN57_ALECA6.280e-2538.49Hypothetical protein n=1 Tax=Alexandrium catenella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_133contigContig_133:82458..83748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176112|e_gw1.133.64.1
BRITEko00000,ko00001,ko01000
KEGG rclassRC00003,RC00980,RC02277
KEGG ReactionR08236,R08239,R08246
KEGG Pathwayko00983,map00983
KEGG koko:K00569
EC2.1.1.67
DescriptionThiopurine S-methyltransferase (TPMT)
COG categoryQ
Max annot lvl28216|Betaproteobacteria
EggNOG OGsCOG0500@1|root,COG0500@2|Bacteria,1RAE4@1224|Proteobacteria,2W039@28216|Betaproteobacteria,44WCJ@713636|Nitrosomonadales
Evalue7.9e-22
Seed ortholog1485544.JQKP01000001_gene1159
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-09_003500.1
TranscriptId176434
TrackFilteredModels1
ProteinId176112
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176112gene_14023Tribonema minus UTEX_B_3156 geneContig_133 82458..83748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176112Trimin1|176112|e_gw1.133.64.1Tribonema minus UTEX_B_3156 polypeptideContig_133 82458..83748 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14023_3exon_14023_3Tribonema minus UTEX_B_3156 exonContig_133 82458..82688 -
exon_14023_2exon_14023_2Tribonema minus UTEX_B_3156 exonContig_133 83077..83406 -
exon_14023_1exon_14023_1Tribonema minus UTEX_B_3156 exonContig_133 83434..83748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14023CDS_14023Tribonema minus UTEX_B_3156 CDSContig_133 83434..83748 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14023 ID=mRNA_14023|Name=jgi.p|Trimin1|176112|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=876bp|location=Sequence derived from alignment at Contig_133:82458..83748- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCCAAGCGCTCGCTTTCCACTCACGGCCGCGCCCGCCGGACACCA
GCGGCGCCGGCGACCGTTGCCGCTCTCGCGCCTGACACGACGCAATTGCG
GCAACCAATGTGAACCTGCTGCGCCGCCGCCGCCGCCGCTCGCGCAGGTG
CCCCTGTGCGGCAAGTCGGTGGACCTGCCGTACCTCGCCAAGCGCGGCCA
CGAGACCGTGGGCGTGGAGGGCGTGGAGGCCGCCGTCTGGGCGCTGCAGC
GCGAGAACTGGCTCGACTTCACGCGCGTCCTCGTCCCGCGCGGCGGCGGC
GGCGGCGGCGCGCCCCCTCAGCACGACAGCGGCGACTTCCTCCCCGCGGA
CGCATTCGGCGGCGCACGCAAGGGCTACGTCTTCACGCGCGGCGCGCACG
GCCAGGGCTACTACCGCGACGCGCCGCCGCTGCTCGCAGCCGTGGAGCGC
CGCCTGCCGCTGCGCGTTGTCGTGGGCGACTTCCTGGAGGTGACGCCGGC
GGAGATCGGCACGTTCGACGCGGCGTGGGACCGCGGGAGCCTCGTCGCGC
TGCCGCCGGGCGCGCGCGCGCGCTACGCGGCGACGCTCGCGGCGCTGCTG
CGCGACGGCGCGCGCGTGCTGCTGGTCACGTCGCACTTCGACCAGAGCGT
ACGCCCTGGCCCCCCCTTCGTCGTGTCACACGCCGAGCTCGAGGCCCTGT
ACGGCCCCCTGGGCTTCACCGTGGAGCTGCTGTCATCGCGCGACGCGTCT
GCAGAGTACAAGGGCGGCCCCTGGGACGCCGTGAGCAGCATCGTCGAGAA
CTGCTACCTGCTCACCAAGCGCGGCCGCGCGGCGCAGCGGCGCTGGTACA
AGCCGTGGTCGTGGTTCAGGGGCTGA
back to top

protein sequence of jgi.p|Trimin1|176112

>Trimin1|176112|e_gw1.133.64.1 ID=Trimin1|176112|e_gw1.133.64.1|Name=jgi.p|Trimin1|176112|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=292bp
MPPSARFPLTAAPAGHQRRRRPLPLSRLTRRNCGNQCEPAAPPPPPLAQV
PLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGG
GGGAPPQHDSGDFLPADAFGGARKGYVFTRGAHGQGYYRDAPPLLAAVER
RLPLRVVVGDFLEVTPAEIGTFDAAWDRGSLVALPPGARARYAATLAALL
RDGARVLLVTSHFDQSVRPGPPFVVSHAELEALYGPLGFTVELLSSRDAS
AEYKGGPWDAVSSIVENCYLLTKRGRAAQRRWYKPWSWFRG*
back to top

mRNA from alignment at Contig_133:82458..83748-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14023 ID=mRNA_14023|Name=jgi.p|Trimin1|176112|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1291bp|location=Sequence derived from alignment at Contig_133:82458..83748- (Tribonema minus UTEX_B_3156 )
ATGCCCCCAAGCGCTCGCTTTCCACTCACGGCCGCGCCCGCCGGACACCA GCGGCGCCGGCGACCGTTGCCGCTCTCGCGCCTGACACGACGCAATTGCG GCAACCAATGTGAACCTGCTGCGCCGCCGCCGCCGCCGCTCGCGCAGGTG CCCCTGTGCGGCAAGTCGGTGGACCTGCCGTACCTCGCCAAGCGCGGCCA CGAGACCGTGGGCGTGGAGGGCGTGGAGGCCGCCGTCTGGGCGCTGCAGC GCGAGAACTGGCTCGACTTCACGCGCGTCCTCGTCCCGCGCGGCGGCGGC GGCGGCGGCGCGCCCGTCAGCGACGGCACAGCTGCCGCCGAGCCTCAGCA CGACAGCGGCGACTTCCTCCCCGCGGACGCATTCGGCGGCGCACGCAAGG GCTACGTCTTCACGCGCGGCGCGCACGGCCAGGGCTACTACCGCGACGCG CCGCCGCTGCTCGCAGCCGTGGAGCGCCGCCTGCCGCTGCGCGTTGTCGT GGGCGACTTCCTGGAGGTGACGCCGGCGGAGATCGGCACGTTCGACGCGG CGTGGGACCGCGGGAGCCTCGTCGCGCTGCCGCCGGGCGCGCGCGCGCGC TACGCGGCGACGCTCGCGGCGCTGCTGCGCGACGGCGCGCGCGTGCTGCT GGTCACGTCGCACTTCGACCAGGTGCGCCCTCTGCAGCCGCCGCCGCCGC CGCCGCGCGCTTTGCTCACTTGCGAGCTGCTCTCACGGGCGGCGACGGAG TTGCAGGGACGGCGCGTGCACCCGTGCAGCTGCAGGGGTGCTCGTGGCAT CAGTGTTGTGGCGTTGTCGAGGTGCACAGCGCAGTCCGCCACCGCGCTCG TTTGTAGCTTGCTGCAGCATGCCCTCGCCGCAGCGTCATGTAGCATCGCT CTACCAGCGCATAGCCCCTGAATCAGATCTCATGCCCACAATGAGATCCG TACCAGCAGCTGGCGCCCCTGTGACTGCACGCGACATCATCCTCGCCATC ATATCGTAACTGACACATGCAGAACCCCCCCCCCCCCCCCCCGCCCTTCC TGCGCTGCAGAGCGTACGCCCTGGCCCCCCCTTCGTCGTGTCACACGCCG AGCTCGAGGCCCTGTACGGCCCCCTGGGCTTCACCGTGGAGCTGCTGTCA TCGCGCGACGCGTCTGCAGAGTACAAGGGCGGCCCCTGGGACGCCGTGAG CAGCATCGTCGAGAACTGCTACCTGCTCACCAAGCGCGGCCGCGCGGCGC AGCGGCGCTGGTACAAGCCGTGGTCGTGGTTCAGGGGCTGA
back to top

Coding sequence (CDS) from alignment at Contig_133:82458..83748-

>mRNA_14023 ID=mRNA_14023|Name=jgi.p|Trimin1|176112|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=876bp|location=Sequence derived from alignment at Contig_133:82458..83748- (Tribonema minus UTEX_B_3156 )
ATGCCCCCAAGCGCTCGCTTTCCACTCACGGCCGCGCCCGCCGGACACCA
GCGGCGCCGGCGACCGTTGCCGCTCTCGCGCCTGACACGACGCAATTGCG
GCAACCAATGTGAACCTGCTGCGCCGCCGCCGCCGCCGCTCGCGCAGGTG
CCCCTGTGCGGCAAGTCGGTGGACCTGCCGTACCTCGCCAAGCGCGGCCA
CGAGACCGTGGGCGTGGAGGGCGTGGAGGCCGCCGTCTGGGCGCTGCAGC
GCGAGAACTGGCTCGACTTCACGCGCGTCCTCGTCCCGCGCGGCGGCGGC
GGCGGCGGCGCGCCCCCTCAGCACGACAGCGGCGACTTCCTCCCCGCGGA
CGCATTCGGCGGCGCACGCAAGGGCTACGTCTTCACGCGCGGCGCGCACG
GCCAGGGCTACTACCGCGACGCGCCGCCGCTGCTCGCAGCCGTGGAGCGC
CGCCTGCCGCTGCGCGTTGTCGTGGGCGACTTCCTGGAGGTGACGCCGGC
GGAGATCGGCACGTTCGACGCGGCGTGGGACCGCGGGAGCCTCGTCGCGC
TGCCGCCGGGCGCGCGCGCGCGCTACGCGGCGACGCTCGCGGCGCTGCTG
CGCGACGGCGCGCGCGTGCTGCTGGTCACGTCGCACTTCGACCAGAGCGT
ACGCCCTGGCCCCCCCTTCGTCGTGTCACACGCCGAGCTCGAGGCCCTGT
ACGGCCCCCTGGGCTTCACCGTGGAGCTGCTGTCATCGCGCGACGCGTCT
GCAGAGTACAAGGGCGGCCCCTGGGACGCCGTGAGCAGCATCGTCGAGAA
CTGCTACCTGCTCACCAAGCGCGGCCGCGCGGCGCAGCGGCGCTGGTACA
AGCCGTGGTCGTGGTTCAGGGGCTGA
back to top