mRNA_13960 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|352961 vs. uniprot
Match: A0A835Z9R8_9STRA (PIH1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R8_9STRA) HSP 1 Score: 1066 bits (2756), Expect = 0.000e+0 Identity = 653/653 (100.00%), Postives = 653/653 (100.00%), Query Frame = 1
Query: 1 MARSMGIDIGQYGKQADGFWKMLDDLHASDPGAYDAYIKDTMEKAKAEEEARARPSFLPVPGYAIETTLRKXXXXXXXXXXXXXXXXXXXXXXXEAEHCSSLDACAAGTRVYVNVTSHVGIEPAQDVLRNALGDETPLRDSADGLQVPLLVSPLRPATSGGGGGVAVDVVVHPWVLRCCLASGTFLAMLTELALQWVEAERGGAAAASTLDHKGPDAAQLDRRWRVVEGRAYVHGGGGDGGEPLRFPLEGAAAQSRPPSQRSAAXXXXXXXXXXXXXXXXXXXXXRSIDTPAGLLAAMACDGSXXXXXXXXXXXXRSGEGSVLQSLGLQNVGSSGGKSAMEVRMPGQRARSEGDKGAKGRSGPIIEEVGAGAGKGGGAKRAGNGKPVVKKGFLTRTVKEELYPQGSSEGQPVGTYEKFMSRCKTKRATAAAAPPADDPEFNALLEAADPDLQQLFSSKDDDDSADPLFGHLQQLAGILGGLGGXXXXXXXXXXXXXXXXXVASGARTGSTGTERAPLREHNSGDGNTRASAXXXXXXXXXAPSAVLSTAGGGETAVAAEGHAIERLENRPAQLRLLSHSLREGPAGLVVSVALGEAAQRSSEAQLDISEQCLRLQMPGCAALEVPFPFAVNAAAAKAKFSAKRRELRVEAPRS 1959
MARSMGIDIGQYGKQADGFWKMLDDLHASDPGAYDAYIKDTMEKAKAEEEARARPSFLPVPGYAIETTLRKXXXXXXXXXXXXXXXXXXXXXXXEAEHCSSLDACAAGTRVYVNVTSHVGIEPAQDVLRNALGDETPLRDSADGLQVPLLVSPLRPATSGGGGGVAVDVVVHPWVLRCCLASGTFLAMLTELALQWVEAERGGAAAASTLDHKGPDAAQLDRRWRVVEGRAYVHGGGGDGGEPLRFPLEGAAAQSRPPSQRSAAXXXXXXXXXXXXXXXXXXXXXRSIDTPAGLLAAMACDGSXXXXXXXXXXXXRSGEGSVLQSLGLQNVGSSGGKSAMEVRMPGQRARSEGDKGAKGRSGPIIEEVGAGAGKGGGAKRAGNGKPVVKKGFLTRTVKEELYPQGSSEGQPVGTYEKFMSRCKTKRATAAAAPPADDPEFNALLEAADPDLQQLFSSKDDDDSADPLFGHLQQLAGILGGLGGXXXXXXXXXXXXXXXXXVASGARTGSTGTERAPLREHNSGDGNTRASAXXXXXXXXXAPSAVLSTAGGGETAVAAEGHAIERLENRPAQLRLLSHSLREGPAGLVVSVALGEAAQRSSEAQLDISEQCLRLQMPGCAALEVPFPFAVNAAAAKAKFSAKRRELRVEAPRS
Sbjct: 1 MARSMGIDIGQYGKQADGFWKMLDDLHASDPGAYDAYIKDTMEKAKAEEEARARPSFLPVPGYAIETTLRKXXXXXXXXXXXXXXXXXXXXXXXEAEHCSSLDACAAGTRVYVNVTSHVGIEPAQDVLRNALGDETPLRDSADGLQVPLLVSPLRPATSGGGGGVAVDVVVHPWVLRCCLASGTFLAMLTELALQWVEAERGGAAAASTLDHKGPDAAQLDRRWRVVEGRAYVHGGGGDGGEPLRFPLEGAAAQSRPPSQRSAAXXXXXXXXXXXXXXXXXXXXXRSIDTPAGLLAAMACDGSXXXXXXXXXXXXRSGEGSVLQSLGLQNVGSSGGKSAMEVRMPGQRARSEGDKGAKGRSGPIIEEVGAGAGKGGGAKRAGNGKPVVKKGFLTRTVKEELYPQGSSEGQPVGTYEKFMSRCKTKRATAAAAPPADDPEFNALLEAADPDLQQLFSSKDDDDSADPLFGHLQQLAGILGGLGGXXXXXXXXXXXXXXXXXVASGARTGSTGTERAPLREHNSGDGNTRASAXXXXXXXXXAPSAVLSTAGGGETAVAAEGHAIERLENRPAQLRLLSHSLREGPAGLVVSVALGEAAQRSSEAQLDISEQCLRLQMPGCAALEVPFPFAVNAAAAKAKFSAKRRELRVEAPRS 653
BLAST of jgi.p|Trimin1|352961 vs. uniprot
Match: D7FKB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKB5_ECTSI) HSP 1 Score: 115 bits (287), Expect = 8.210e-23 Identity = 150/502 (29.88%), Postives = 208/502 (41.43%), Query Frame = 1
Query: 1 MARSMGIDIGQ-YGKQADGFWKMLDDLHASDPGAYDAYIKDTMEKAKAEEEARARPS---FLPVPGYAIETTLRKXXXXXXXXXXXXXXXXXXXXXXXEAEHCSSLDACAAGTRVYVNVTSHVGIEPAQDVLRNALGDETPLRDSADGLQVPLLVSPLRPATSGGGG-GVAVDVVVHPWVLRCCLASGTFLAMLTELALQWVEAERGGAAAASTLDHKGPDAAQLDRRWRVVEGRAYVHGGGGDGGEPLRFPLEGAAAQSRPPSQRSAAXXXXXXXXXXXXXXXXXXXXXRSIDTPAGLLAAMAC---DGSXXXXXXXXXXXXRS---------------GEGSVLQ-SLGL-------QNVGSSGGKSAMEVRMPGQRARSEGDKGAK---------GRSGPIIEEV-------GAGAGKGGGA-------KRAGNG----------------KPVVKKGFLTR--------TVKEELYPQGSSE-GQPVGTYEKFMSRCK 1269
+A+ MG GQ +G QA WKMLDDL +D AY E AKA A +P F P+PG+ ++ +L++ ++ A GT+V++N+ H G+ P D + + D T +A GL++P+ VS +R T +AVDVV HPWVLRC F + LA W+ E G + +R ++++ Y G G GG P+ FP A++Q+ P +R+ XXXXXXXXXXXXXX +D P LLAA+ DG + GEG + +LGL + G+ + ++ +PG A D G + GR GP+I E+ A AG GG A RA +G PVVKKGFL+ + LYP G SE G Y K MSRCK
Sbjct: 42 LAKEMGF--GQDFGPQAANMWKMLDDLAVTDSAAY-------AEMAKAGAHALRKPKGKFFTPIPGFVVKASLQRPWAPLPSAVDGGVGGGTGKV----------VENAAVGTKVFINLCEHEGVSPPIDQTDSPV-DVTKEGRNASGLRIPMFVSRVRETTDHSDERALAVDVVFHPWVLRCSKGEPRFRDQVVALAAGWITKEHPGLV--------------VSQRRKLLKLCTYKGGDGAKGGTPVPFPAGDASSQADPLEERTRGSGGGPXXXXXXXXXXXXXXL---LDDPKSLLAAIRSSEPDGESGVGGNGDSKEGKQEVATASTVDGGPTGRGEGDGIPGALGLNAHGGYRKGGGNRNASATRDILLPGALAGLASDSGDRKRTENGLNEGRRGPLISEIVPDTSTTTARAGDGGEALRQVSDDSRAVDGCQGQEPGVERKVGKKSAPVVKKGFLSSFKVGGKAGLERAPLYPPGGSENGAEPSAYAKLMSRCK 506
BLAST of jgi.p|Trimin1|352961 vs. uniprot
Match: A0A8K1FCK2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCK2_PYTOL) HSP 1 Score: 77.4 bits (189), Expect = 2.920e-11 Identity = 126/530 (23.77%), Postives = 196/530 (36.98%), Query Frame = 1
Query: 1 MARSMGIDIGQYGKQADGFWKMLDDLHASDPGAYDAYI----KDTMEKAKAEEEA---RARPSFL-PVPGYAIETTLRKXXXXXXXXXXXXXXXXXXXXXXXEAEHCSSLDACAAGTRVYVNVTSHVGIEPAQDVLRNALGDETPLRDS-----ADGLQVPLLVSPLRPATSGGGGGV-AVDVVVHPWVLRCCLASGTFLAMLTELALQWVEAERGGAAAASTLDHKGPDAAQLDRRWRVVEGRAYVHGGGGDGGEPL--RFPLEGAAAQSRPPSQRSAAXXXXXXXXXXXXXXXXXXXXXRSIDTPAGLLAAMACDGSXXXXXXXXXXXXRSGEGSVLQSLG--------LQNVGSSGGKSAMEVRMPGQRARSEGDKGAKGRSGPIIEEVGAGAGKGGGAKRAGNGKPVVKKGFLTRTVKEELYPQGSSEGQPVGTYEKFMSRCKT---------------------KRATAAAAPPAD------DPEFNALLEAADPDLQQLFSSKDDDDSADPLFG-HLQQLAGIL 1434
+A+ MG+D +GK+A WKMLD++ +DP AY +I KD A + E A P + P+PG ++ C+ +D +++VN+ +H + D+ +N D RD+ LQ+PL++ LR G AVDVV HPWVL C F + +LA++W++ + + + P + R++ GG G E + +F ++ Q++P S + + ++P LL ++ S +GE Q +++V K +EV P Q + E + K S VVKKGFL + K LYP+GS+EG+P Y +SR K K T+A D D EF L ADPDL+ S+D S + LFG H+ + A L
Sbjct: 33 IAKQMGLDSKDFGKEAANLWKMLDEMAENDPKAYQEFIHEQIKDGPPMAASTNETGTPSASPRYFDPLPGCVVK--------------------------------CTMVDVQQQEQKLFVNLCAHEIV----DMPKNPNSDRDVPRDTRAVPHTSNLQIPLVIGSLRKIHDVSGAACHAVDVVFHPWVLERCEWDANFKREVLKLAIEWIQQD-------AKIKLTTPTGKFIKSRYK---------GGLNVGDEIITAKFLID-PETQAKPGSNQIGQRPLSTEKPVVAKL---------ATESPTDLLKEISLRDSDERIPKDEFIIALAGEKKAQQCDSKPQVCQDEVKHVPRPISKKLIEVIEPMQDNQKEHMQKKKPSS-------------------------VVKKGFLNSS-KTSLYPKGSNEGKPASAYVNLLSRSKVVDMNEMQQQRKKTVTDEFQFLKPQTSADRKSTDGEIDHGDHEFEQLCMDADPDLKPRHGSEDKT-STEQLFGDHIDEFAKFL 473
BLAST of jgi.p|Trimin1|352961 vs. uniprot
Match: A0A6A4DK22_9STRA (PIH1 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DK22_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.670e-9 Identity = 55/217 (25.35%), Postives = 95/217 (43.78%), Query Frame = 1
Query: 1 MARSMGIDIGQYGKQADGFWKMLDDLHASDPGAYDAYIKDTMEKA-------------KAEEEARARPSFLPVPGYAIETTLRKXXXXXXXXXXXXXXXXXXXXXXXEAEHCSSLDACAAGTRVYVNVTSHVGIE-PAQDVLRNALGDETPLRDSADGLQVPLLVSPLRPATSGGGG-GVAVDVVVHPWVLRCCLASGTFLAMLTELALQWVEAERG 606
+A+ MG+ +G++A W+ L+DL SDP Y+++I + ++ +A +A F P PG+ ++ T+ + C + T++++N+ +H I+ P + ++T + LQVPL+V LR T G VDVVV+PWVLR F + +LA+QWV+ + G
Sbjct: 31 IAKQMGLQPKDFGEEAQALWQTLNDLSTSDPKRYESFINEQLQDGPPSTPTTDASSSNQATHDASPPRFFTPDPGFVVKCTM------------------------YHSVKCQQQE-----TKLFLNICAHKLIDAPKNPNSGQEVPEDTRAVPNTSNLQVPLVVGKLREITDFNGALCCVVDVVVNPWVLRRSEWDANFKREVMKLAVQWVQQDTG 218
BLAST of jgi.p|Trimin1|352961 vs. uniprot
Match: A0A662XWB4_9STRA (PIH1 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XWB4_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 7.610e-7 Identity = 51/219 (23.29%), Postives = 85/219 (38.81%), Query Frame = 1
Query: 1 MARSMGIDIGQYGKQADGFWKMLDDLHASDPGAYDAYIKDTMEKAKAEEEARARPS---------------FLPVPGYAIETTLRKXXXXXXXXXXXXXXXXXXXXXXXEAEHCSSLDACAAGTRVYVNVTSHVGIE-PAQDVLRNALGDETPLRDSADGLQVPLLVSPLRP-ATSGGGGGVAVDVVVHPWVLRCCLASGTFLAMLTELALQWVEAERG 606
+A+ MG+ +G +A W L+DL + DP Y+A+I D ++ F P PG+ ++ + S+ T++++N+ H + P + ++T + LQ+PL+V LR A G AVDVV+HPWVLR F + +LA+ WV+ + G
Sbjct: 34 IAKQMGLQPSDFGDEAQALWSTLNDLSSKDPKRYEAFINDQLQDGPPXXXXXXXXXXXXXXXXXTSTPPRFFTPEPGFVVKCAMYH-----------------------------SIKCQQRETKLFLNLCGHKLVAAPTNPNNGQEVPEDTRAVPNTSNLQIPLVVGKLRELADLNGAVCCAVDVVLHPWVLRRAEWDSAFKREVLKLAVHWVQQDAG 223 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352961 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13960 ID=mRNA_13960|Name=jgi.p|Trimin1|352961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1976bp|location=Sequence derived from alignment at Contig_138:63604..68505- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGAGATCCATGGGCATCGACATCGGGCAATACGGCAAGCAGGCCGAback to top protein sequence of jgi.p|Trimin1|352961 >Trimin1|352961|estExt_Genemark1.C_Ctg_1380007 ID=Trimin1|352961|estExt_Genemark1.C_Ctg_1380007|Name=jgi.p|Trimin1|352961|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=654bp MARSMGIDIGQYGKQADGFWKMLDDLHASDPGAYDAYIKDTMEKAKAEEEback to top mRNA from alignment at Contig_138:63604..68505- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13960 ID=mRNA_13960|Name=jgi.p|Trimin1|352961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4902bp|location=Sequence derived from alignment at Contig_138:63604..68505- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_138:63604..68505- >mRNA_13960 ID=mRNA_13960|Name=jgi.p|Trimin1|352961|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1962bp|location=Sequence derived from alignment at Contig_138:63604..68505- (Tribonema minus UTEX_B_3156 )back to top |