mRNA_13770 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A836CD42_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD42_9STRA) HSP 1 Score: 259 bits (663), Expect = 9.130e-88 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 Query: 1 LPANVPQVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ 387 LPANVPQVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ Sbjct: 1 LPANVPQVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ 129
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A835ZAN3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN3_9STRA) HSP 1 Score: 169 bits (429), Expect = 3.890e-52 Identity = 86/125 (68.80%), Postives = 98/125 (78.40%), Query Frame = 1 Query: 19 QVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFG--AGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ 387 QV +LG GAS VFKAVDVDTL+LVAVK+I F RD ++ RLI+ EV AL SQ AP+L +TFG A TPCP+IS FYG DK RMQASIAMEY CCGSLE W KDGLP PEPW+AH+AYS+LQ Sbjct: 3 QVGRLGRGASAKVFKAVDVDTLKLVAVKVISFK-RDSQAHRLIKHEVTALRSQRAPLLSKTFGTDAATTPCPHISRFYGCVVDKLRMQASIAMEYECCGSLEDWVKDGLPTPEPWLAHVAYSILQ 126
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A835Z4M2_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M2_9STRA) HSP 1 Score: 160 bits (404), Expect = 2.410e-48 Identity = 81/125 (64.80%), Postives = 95/125 (76.00%), Query Frame = 1 Query: 19 QVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFG--AGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ 387 QV KLG GAS SVFKAVD+ TL+LVAVK+I + RD + RLIR EV AL SQ AP+LL TFG + + PC YI+ FYG DK+ QASIAMEY CCGSLE W +DGLP PEPW+AH+AYS+LQ Sbjct: 2 QVGKLGKGASASVFKAVDMFTLKLVAVKVIKMD-RDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ 125
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A836CBQ3_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ3_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.120e-21 Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 1 Query: 214 MTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSV 381 MTPCPYIS FYG K D++RM ASIA+E+ACCGSL+ WS +GLPVPEPWIA+IAY V Sbjct: 1 MTPCPYISGFYGAKLDQSRMLASIAVEFACCGSLKDWSNNGLPVPEPWIAYIAYCV 56
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A836C8E3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E3_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 3.720e-15 Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 1 Query: 19 QVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVL 384 ++ +LG GAS SV+ AV V TL +VA+K + + A +R E+ AL +Q +P++ ++F T P+I FYG + R A +A+E GSL+A+ G P PEPW+AH+A+S L Sbjct: 2 KLQRLGKGASSSVYMAVCVRTLAVVALKESPIRTAADRDA--VRSELQALRTQRSPLMDRSFVGDDTASPHIVRFYGGVMLQERT-AVLAVELVAGGSLQAFIDRGSPAPEPWLAHVAHSCL 120
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A7S1U8N0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8N0_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 5.120e-7 Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 1 Query: 22 VAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ 387 + +LG GASG+V+KA+ V TL +VAVK++ N +D K +++R E+ AL + G G + FY D R I +EY G+L+ +PV E +A +A SVL+ Sbjct: 86 LGELGRGASGTVYKAMHVPTLSIVAVKMVFVN-QDEKRRQMVR-ELRALRALGK-------GLGAEGESSVIKFYDAFTDMERNAVCIVLEYMNAGTLQDLVNAQVPVNEHMLAAVASSVLK 198
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: E9B2K2_LEIMU (Protein kinase domain-containing protein n=1 Tax=Leishmania mexicana (strain MHOM/GT/2001/U1103) TaxID=929439 RepID=E9B2K2_LEIMU) HSP 1 Score: 53.5 bits (127), Expect = 1.190e-5 Identity = 39/117 (33.33%), Postives = 57/117 (48.72%), Query Frame = 1 Query: 31 LGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSV 381 +G GA G+V++A+++DT ++VAVK + S D K+A L RE LS + P + FYG D Q + MEYA GS+ + P+PEP H A + Sbjct: 852 IGKGAFGAVYRALNLDTGRIVAVKQSRY-SYDDKTADLNWREFQMLSM-------------LPPHANVITFYGASRDVDTNQLLLVMEYASGGSIVQLYRYFRPIPEPLFYHHAVGI 954
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A7S0S5D2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S5D2_9CHLO) HSP 1 Score: 52.0 bits (123), Expect = 3.800e-5 Identity = 37/120 (30.83%), Postives = 61/120 (50.83%), Query Frame = 1 Query: 31 LGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSL-EAWSKDGLPVPEPWIAHIAYSVLQ 387 LG GA G+VFKA D+ T +LVA+K++ D + + I++E+A L+ + P +++ G+ + R + I MEY GS + S G P+PE IA++ L+ Sbjct: 28 LGKGAYGTVFKATDLQTGELVAIKVLPLLDTDKEELKNIQKEIAFLAGCNHPNVVKYLGSY----------------RHRHELWIVMEYCGGGSASDLVSATGQPMPEDAIAYVCGEALK 131 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13770 ID=mRNA_13770|Name=jgi.p|Trimin1|155496|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_43:786918..787304+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TTACCTGCGAACGTCCCGCAGGTGGCTAAACTTGGCAGTGGAGCCAGCGGback to top protein sequence of jgi.p|Trimin1|155496 >Trimin1|155496|gw1.43.85.1 ID=Trimin1|155496|gw1.43.85.1|Name=jgi.p|Trimin1|155496|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp LPANVPQVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRback to top mRNA from alignment at Contig_43:786918..787304+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13770 ID=mRNA_13770|Name=jgi.p|Trimin1|155496|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_43:786918..787304+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_43:786918..787304+ >mRNA_13770 ID=mRNA_13770|Name=jgi.p|Trimin1|155496|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_43:786918..787304+ (Tribonema minus UTEX_B_3156 )back to top |