mRNA_13770 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155496
Unique NamemRNA_13770
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A836CD42_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD42_9STRA)

HSP 1 Score: 259 bits (663), Expect = 9.130e-88
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
Query:    1 LPANVPQVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ 387
            LPANVPQVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ
Sbjct:    1 LPANVPQVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ 129          
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A835ZAN3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN3_9STRA)

HSP 1 Score: 169 bits (429), Expect = 3.890e-52
Identity = 86/125 (68.80%), Postives = 98/125 (78.40%), Query Frame = 1
Query:   19 QVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFG--AGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ 387
            QV +LG GAS  VFKAVDVDTL+LVAVK+I F  RD ++ RLI+ EV AL SQ AP+L +TFG  A  TPCP+IS FYG   DK RMQASIAMEY CCGSLE W KDGLP PEPW+AH+AYS+LQ
Sbjct:    3 QVGRLGRGASAKVFKAVDVDTLKLVAVKVISFK-RDSQAHRLIKHEVTALRSQRAPLLSKTFGTDAATTPCPHISRFYGCVVDKLRMQASIAMEYECCGSLEDWVKDGLPTPEPWLAHVAYSILQ 126          
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A835Z4M2_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M2_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.410e-48
Identity = 81/125 (64.80%), Postives = 95/125 (76.00%), Query Frame = 1
Query:   19 QVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFG--AGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ 387
            QV KLG GAS SVFKAVD+ TL+LVAVK+I  + RD  + RLIR EV AL SQ AP+LL TFG  + + PC YI+ FYG   DK+  QASIAMEY CCGSLE W +DGLP PEPW+AH+AYS+LQ
Sbjct:    2 QVGKLGKGASASVFKAVDMFTLKLVAVKVIKMD-RDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ 125          
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A836CBQ3_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ3_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.120e-21
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 1
Query:  214 MTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSV 381
            MTPCPYIS FYG K D++RM ASIA+E+ACCGSL+ WS +GLPVPEPWIA+IAY V
Sbjct:    1 MTPCPYISGFYGAKLDQSRMLASIAVEFACCGSLKDWSNNGLPVPEPWIAYIAYCV 56          
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A836C8E3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.720e-15
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   19 QVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVL 384
            ++ +LG GAS SV+ AV V TL +VA+K     +   + A  +R E+ AL +Q +P++ ++F    T  P+I  FYG    + R  A +A+E    GSL+A+   G P PEPW+AH+A+S L
Sbjct:    2 KLQRLGKGASSSVYMAVCVRTLAVVALKESPIRTAADRDA--VRSELQALRTQRSPLMDRSFVGDDTASPHIVRFYGGVMLQERT-AVLAVELVAGGSLQAFIDRGSPAPEPWLAHVAHSCL 120          
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A7S1U8N0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8N0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.120e-7
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 1
Query:   22 VAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ 387
            + +LG GASG+V+KA+ V TL +VAVK++  N +D K  +++R E+ AL +          G G      +  FY    D  R    I +EY   G+L+      +PV E  +A +A SVL+
Sbjct:   86 LGELGRGASGTVYKAMHVPTLSIVAVKMVFVN-QDEKRRQMVR-ELRALRALGK-------GLGAEGESSVIKFYDAFTDMERNAVCIVLEYMNAGTLQDLVNAQVPVNEHMLAAVASSVLK 198          
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: E9B2K2_LEIMU (Protein kinase domain-containing protein n=1 Tax=Leishmania mexicana (strain MHOM/GT/2001/U1103) TaxID=929439 RepID=E9B2K2_LEIMU)

HSP 1 Score: 53.5 bits (127), Expect = 1.190e-5
Identity = 39/117 (33.33%), Postives = 57/117 (48.72%), Query Frame = 1
Query:   31 LGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSV 381
            +G GA G+V++A+++DT ++VAVK   + S D K+A L  RE   LS              + P   +  FYG   D    Q  + MEYA  GS+    +   P+PEP   H A  +
Sbjct:  852 IGKGAFGAVYRALNLDTGRIVAVKQSRY-SYDDKTADLNWREFQMLSM-------------LPPHANVITFYGASRDVDTNQLLLVMEYASGGSIVQLYRYFRPIPEPLFYHHAVGI 954          
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Match: A0A7S0S5D2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S5D2_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 3.800e-5
Identity = 37/120 (30.83%), Postives = 61/120 (50.83%), Query Frame = 1
Query:   31 LGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSL-EAWSKDGLPVPEPWIAHIAYSVLQ 387
            LG GA G+VFKA D+ T +LVA+K++     D +  + I++E+A L+  + P +++  G+                 + R +  I MEY   GS  +  S  G P+PE  IA++    L+
Sbjct:   28 LGKGAYGTVFKATDLQTGELVAIKVLPLLDTDKEELKNIQKEIAFLAGCNHPNVVKYLGSY----------------RHRHELWIVMEYCGGGSASDLVSATGQPMPEDAIAYVCGEALK 131          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155496 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A836CD42_9STRA9.130e-88100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835ZAN3_9STRA3.890e-5268.80Kinase-like domain-containing protein (Fragment) n... [more]
A0A835Z4M2_9STRA2.410e-4864.80Kinase-like domain-containing protein (Fragment) n... [more]
A0A836CBQ3_9STRA1.120e-2175.00Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A836C8E3_9STRA3.720e-1539.34Kinase-like domain-containing protein (Fragment) n... [more]
A0A7S1U8N0_9STRA5.120e-734.43Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
E9B2K2_LEIMU1.190e-533.33Protein kinase domain-containing protein n=1 Tax=L... [more]
A0A7S0S5D2_9CHLO3.800e-530.83Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_43contigContig_43:786918..787304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155496|gw1.43.85.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04016,ko05418,map04016,map05418
KEGG koko:K20607
EC2.7.12.2
DescriptionMAP kinase kinase activity
COG categoryG
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0581@1|root,KOG0581@2759|Eukaryota
Evalue3.1e-12
Seed ortholog157072.XP_008870732.1
Hectar predicted targeting categoryother localisation
TranscriptId155818
TrackFilteredModels1
ProteinId155496
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155496gene_13770Tribonema minus UTEX_B_3156 geneContig_43 786918..787304 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13770_1exon_13770_1Tribonema minus UTEX_B_3156 exonContig_43 786918..787304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13770CDS_13770Tribonema minus UTEX_B_3156 CDSContig_43 786918..787304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155496Trimin1|155496|gw1.43.85.1Tribonema minus UTEX_B_3156 polypeptideContig_43 786918..787304 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13770 ID=mRNA_13770|Name=jgi.p|Trimin1|155496|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_43:786918..787304+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTACCTGCGAACGTCCCGCAGGTGGCTAAACTTGGCAGTGGAGCCAGCGG
CAGCGTCTTCAAGGCGGTGGACGTGGACACCCTACAGCTGGTGGCCGTGA
AGCTCATCCACTTCAACAGCAGGGACATGAAGTCTGCGCGCCTCATCCGC
AGAGAAGTGGCGGCGTTGAGCTCCCAGAGTGCGCCGATGCTCTTGCAGAC
GTTCGGCGCTGGGATGACCCCCTGCCCCTACATCTCGCACTTCTATGGGG
TCAAGTACGACAAGACGCGCATGCAGGCGAGCATCGCCATGGAGTACGCT
TGCTGCGGGAGCCTCGAGGCCTGGTCCAAGGACGGTCTGCCTGTGCCAGA
GCCCTGGATCGCACACATCGCCTACTCGGTGCTGCAG
back to top

protein sequence of jgi.p|Trimin1|155496

>Trimin1|155496|gw1.43.85.1 ID=Trimin1|155496|gw1.43.85.1|Name=jgi.p|Trimin1|155496|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp
LPANVPQVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIR
REVAALSSQSAPMLLQTFGAGMTPCPYISHFYGVKYDKTRMQASIAMEYA
CCGSLEAWSKDGLPVPEPWIAHIAYSVLQ
back to top

mRNA from alignment at Contig_43:786918..787304+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13770 ID=mRNA_13770|Name=jgi.p|Trimin1|155496|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_43:786918..787304+ (Tribonema minus UTEX_B_3156 )
TTACCTGCGAACGTCCCGCAGGTGGCTAAACTTGGCAGTGGAGCCAGCGG CAGCGTCTTCAAGGCGGTGGACGTGGACACCCTACAGCTGGTGGCCGTGA AGCTCATCCACTTCAACAGCAGGGACATGAAGTCTGCGCGCCTCATCCGC AGAGAAGTGGCGGCGTTGAGCTCCCAGAGTGCGCCGATGCTCTTGCAGAC GTTCGGCGCTGGGATGACCCCCTGCCCCTACATCTCGCACTTCTATGGGG TCAAGTACGACAAGACGCGCATGCAGGCGAGCATCGCCATGGAGTACGCT TGCTGCGGGAGCCTCGAGGCCTGGTCCAAGGACGGTCTGCCTGTGCCAGA GCCCTGGATCGCACACATCGCCTACTCGGTGCTGCAG
back to top

Coding sequence (CDS) from alignment at Contig_43:786918..787304+

>mRNA_13770 ID=mRNA_13770|Name=jgi.p|Trimin1|155496|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_43:786918..787304+ (Tribonema minus UTEX_B_3156 )
TTACCTGCGAACGTCCCGCAGGTGGCTAAACTTGGCAGTGGAGCCAGCGG
CAGCGTCTTCAAGGCGGTGGACGTGGACACCCTACAGCTGGTGGCCGTGA
AGCTCATCCACTTCAACAGCAGGGACATGAAGTCTGCGCGCCTCATCCGC
AGAGAAGTGGCGGCGTTGAGCTCCCAGAGTGCGCCGATGCTCTTGCAGAC
GTTCGGCGCTGGGATGACCCCCTGCCCCTACATCTCGCACTTCTATGGGG
TCAAGTACGACAAGACGCGCATGCAGGCGAGCATCGCCATGGAGTACGCT
TGCTGCGGGAGCCTCGAGGCCTGGTCCAAGGACGGTCTGCCTGTGCCAGA
GCCCTGGATCGCACACATCGCCTACTCGGTGCTGCAG
back to top