mRNA_13633 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|352778 vs. uniprot
Match: A0A835ZAT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT6_9STRA) HSP 1 Score: 215 bits (547), Expect = 5.280e-63 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 1 Query: 127 RGVCLRGVRIRGLRRCCSXXXXXXXXXXXXXXXXXXXXXWLRGRRRRXXXCGXXXXXXXXXXXXXXXXXXXXHCDRLRRRDRVCIHVLLLLLXRXXXXXRHSCRLXXXXXXXXXXXXXXXXXTVDLRXXXXXXXXXXXXXXXWHRRWXCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSCGRGIRGVDGARGGRGRGPTGHRRGGGAGDWGRGASRRSWRGAARGRGRGRCAAXXXXXXXXXXXXXXEAHSWGGCLRPR 993 RGVCLRGVRIRGLRRCCSXXXXXXXXXXXXXXXXXXXXXWLRGRRRRXXXCGXXXXXXXXXXXXXXXXXXXXHCDRLRRRDRVCIHVLLLLLXRXXXXXRHSCRLXXXXXXXXXXXXXXXXXTVDLRXXXXXXXXXXXXXXXWHRRWXCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSCGRGIRGVDGARGGRGRGPTGHRRGGGAGDWGRGASRRSWRGAARGRGRGRCAAXXXXXXXXXXXXXXEAHSWGGCLRPR Sbjct: 43 RGVCLRGVRIRGLRRCCSXXXXXXXXXXXXXXXXXXXXXWLRGRRRRXXXCGXXXXXXXXXXXXXXXXXXXXHCDRLRRRDRVCIHVLLLLLXRXXXXXRHSCRLXXXXXXXXXXXXXXXXXTVDLRXXXXXXXXXXXXXXXWHRRWXCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSCGRGIRGVDGARGGRGRGPTGHRRGGGAGDWGRGASRRSWRGAARGRGRGRCAAXXXXXXXXXXXXXXEAHSWGGCLRPR 331
BLAST of jgi.p|Trimin1|352778 vs. uniprot
Match: A0A835YPL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPL5_9STRA) HSP 1 Score: 163 bits (413), Expect = 3.990e-46 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 3 Query: 996 NIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 1253 +IGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV Sbjct: 18 SIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 103
BLAST of jgi.p|Trimin1|352778 vs. uniprot
Match: A0A836CHB9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB9_9STRA) HSP 1 Score: 163 bits (413), Expect = 1.270e-45 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 3 Query: 996 NIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 1253 +IGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV Sbjct: 55 SIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 140
BLAST of jgi.p|Trimin1|352778 vs. uniprot
Match: A0A835ZJ73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ73_9STRA) HSP 1 Score: 162 bits (409), Expect = 2.580e-45 Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 3 Query: 996 NIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 1253 +IGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRV+THMAESRGGGHMEEDVGEDPEMPFGGGGV Sbjct: 34 SIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVITHMAESRGGGHMEEDVGEDPEMPFGGGGV 119
BLAST of jgi.p|Trimin1|352778 vs. uniprot
Match: A0A836CIJ9_9STRA (Uncharacterized protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIJ9_9STRA) HSP 1 Score: 161 bits (408), Expect = 3.100e-45 Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 3 Query: 996 NIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 1253 +IGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRS LSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV Sbjct: 29 SIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSELSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 114
BLAST of jgi.p|Trimin1|352778 vs. uniprot
Match: A0A835YTE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTE7_9STRA) HSP 1 Score: 160 bits (404), Expect = 2.200e-44 Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 3 Query: 984 TTALNIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 1253 TT + + QGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV Sbjct: 44 TTGIKMTWQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 133
BLAST of jgi.p|Trimin1|352778 vs. uniprot
Match: A0A835ZE45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE45_9STRA) HSP 1 Score: 164 bits (414), Expect = 2.510e-43 Identity = 91/107 (85.05%), Postives = 93/107 (86.92%), Query Frame = 3 Query: 933 ALAPAGEEGSAFLGGLLTTALNIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 1253 A+ GEEGS + IGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV Sbjct: 231 AMQAGGEEGSTTDVRNVLRQHPIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 337
BLAST of jgi.p|Trimin1|352778 vs. uniprot
Match: A0A835Z9T6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T6_9STRA) HSP 1 Score: 161 bits (407), Expect = 6.290e-43 Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 3 Query: 996 NIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 1253 +IGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESR GGHMEEDVGEDPEMPFGGGGV Sbjct: 196 SIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRAGGHMEEDVGEDPEMPFGGGGV 281
BLAST of jgi.p|Trimin1|352778 vs. uniprot
Match: A0A835YQS6_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS6_9STRA) HSP 1 Score: 157 bits (397), Expect = 7.980e-43 Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 3 Query: 996 NIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGG 1250 +IGEQGRKLLEAVATEYASRMSVPGGARPKALKGIA ARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGE+PEMPFGGGG Sbjct: 6 SIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIAQARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGENPEMPFGGGG 90
BLAST of jgi.p|Trimin1|352778 vs. uniprot
Match: A0A836C8S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S9_9STRA) HSP 1 Score: 157 bits (396), Expect = 2.770e-42 Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3 Query: 996 NIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 1253 +IGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHM ESRGGGH EEDVGEDPEMPF GGG+ Sbjct: 117 SIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMTESRGGGHTEEDVGEDPEMPFSGGGI 202 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352778 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13633 ID=mRNA_13633|Name=jgi.p|Trimin1|352778|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1256bp|location=Sequence derived from alignment at Contig_131:269662..271936- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGCGGCGGCGGCGGCAGCGTACACCGGCTGCTGCTGCTGCTGCTGCACGGback to top protein sequence of jgi.p|Trimin1|352778 >Trimin1|352778|estExt_Genemark1.C_Ctg_1310038 ID=Trimin1|352778|estExt_Genemark1.C_Ctg_1310038|Name=jgi.p|Trimin1|352778|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=332bp RGGGGSVHRLLLLLLHGRSIRRLRRRERGLLLHHDDGLRRRRRGVCLRGVback to top mRNA from alignment at Contig_131:269662..271936- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13633 ID=mRNA_13633|Name=jgi.p|Trimin1|352778|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2275bp|location=Sequence derived from alignment at Contig_131:269662..271936- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_131:269662..271936- >mRNA_13633 ID=mRNA_13633|Name=jgi.p|Trimin1|352778|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=996bp|location=Sequence derived from alignment at Contig_131:269662..271936- (Tribonema minus UTEX_B_3156 )back to top |