mRNA_13587 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352637
Unique NamemRNA_13587
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352637 vs. uniprot
Match: A0A835ZCU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU1_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.940e-69
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:    1 MVFDSEGSFPMSTLNRDAANIGVSDADMRVCFQTGECEVPQEFEQSMTKAFNQMPYMASKQTMTVVDGDSEYEEPINWAAQWIDADLEGNFPVTGGGGAAAEEFSI 318
            MVFDSEGSFPMSTLNRDAANIGVSDADMRVCFQTGECEVPQEFEQSMTKAFNQMPYMASKQTMTVVDGDSEYEEPINWAAQWIDADLEGNFPVTGGGGAAAEEFSI
Sbjct:    1 MVFDSEGSFPMSTLNRDAANIGVSDADMRVCFQTGECEVPQEFEQSMTKAFNQMPYMASKQTMTVVDGDSEYEEPINWAAQWIDADLEGNFPVTGGGGAAAEEFSI 106
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BLAST of jgi.p|Trimin1|352637 vs. uniprot
Match: A0A835Z247_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z247_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.740e-31
Identity = 59/105 (56.19%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:    4 VFDSEGSFPMSTLNRDAANIGVSDADMRVCFQTGECEVPQEFEQSMTKAFNQMPYMASKQTMTVVDGDSEYEEPINWAAQWIDADLEGNFPVTGGGGAAAEEFSI 318
            VFDSEG+F M  L+ D + + V++ADM  CFQTGECE+PQEFE+ MTKAFNQ+PY+ +KQTMTVVDGDSE+EEP+ WA +W  ++++ + PV      +  EF I
Sbjct:   45 VFDSEGTFSMQELDTDPS-LQVTEADMMTCFQTGECEIPQEFEKKMTKAFNQVPYVGTKQTMTVVDGDSEHEEPVPWAGKW--SEVDDDIPVEAYQNESDAEFDI 146
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352637 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZCU1_9STRA1.940e-69100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z247_9STRA2.740e-3156.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_126contigContig_126:381829..383742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352637|estExt_Genemark1.C_Ctg_1260047
Hectar predicted targeting categoryother localisation
TranscriptId352959
TrackFilteredModels1
ProteinId352637
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352637gene_13587Tribonema minus UTEX_B_3156 geneContig_126 381829..383742 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13587_3exon_13587_3Tribonema minus UTEX_B_3156 exonContig_126 381829..382351 -
exon_13587_2exon_13587_2Tribonema minus UTEX_B_3156 exonContig_126 383084..383208 -
exon_13587_1exon_13587_1Tribonema minus UTEX_B_3156 exonContig_126 383635..383742 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13587UTR3_13587Tribonema minus UTEX_B_3156 three_prime_UTRContig_126 381829..382263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13587CDS_13587Tribonema minus UTEX_B_3156 CDSContig_126 383635..383742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352637Trimin1|352637|estExt_Genemark1.C_Ctg_1260047Tribonema minus UTEX_B_3156 polypeptideContig_126 382264..383742 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13587 ID=mRNA_13587|Name=jgi.p|Trimin1|352637|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=756bp|location=Sequence derived from alignment at Contig_126:381829..383742- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTTGATAGCGAGGGCAGCTTCCCCATGAGCACGCTGAATAGGGA
TGCCGCCAACATTGGCGTCTCAGATGCCGACATGAGGGTCTGTTTCCAGA
CTGGCGAGTGCGAAGTGCCACAGGAGTTTGAACAGTCCATGACCAAGGCC
TTCAATCAGATGCCCTACATGGCCAGCAAGCAGACCATGACCGTCGTGGA
TGGTGACTCTGAGTACGAGGAGCCAATCAACTGGGCCGCGCAGTGGATCG
ACGCGGATCTAGAGGGCAACTTTCCAGTCACGGGCGGCGGCGGCGCGGCT
GCGGAGGAGTTCAGCATCTAAGTAGAGGAGCCGGCAAGGAGCGTCACCGG
AGCGGCGCTGGGTACATAGAGCCCAGCTGGCTGTTGCAGTAGAGTTTCCA
CGGCAAGGCCGTAGCGGCGCGGCCGCCAAGGAGGCTGGTGTCAAGGCTAG
ACTTCAGCGTGGGGGCTACGGTGCCAGTAAGAGGCGTCACCGGGGTGGTC
CTAGTATGTATGTTAAGCTGAGTGATGGGAGTGAGGGCTGCGCACTGGCG
CATTGTAGACAGGGCGAGAGAAAATAGGGCAGCACAGCAGGCGCCATAGC
TGCCGGGCCTTGAAATGTGCTGCCGTGGCGGAAGGTGTGCCGTGCGGAAC
TTGGGGCATGGTATGACATGCGGCCACACCGGCTGCCTGTTGAAGCTATT
TTAGAAGTGTTTTACTACGTGACAGCACGCATTCACGGTGTAAATGTACC
AAGTTG
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protein sequence of jgi.p|Trimin1|352637

>Trimin1|352637|estExt_Genemark1.C_Ctg_1260047 ID=Trimin1|352637|estExt_Genemark1.C_Ctg_1260047|Name=jgi.p|Trimin1|352637|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
MVFDSEGSFPMSTLNRDAANIGVSDADMRVCFQTGECEVPQEFEQSMTKA
FNQMPYMASKQTMTVVDGDSEYEEPINWAAQWIDADLEGNFPVTGGGGAA
AEEFSI*
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mRNA from alignment at Contig_126:381829..383742-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13587 ID=mRNA_13587|Name=jgi.p|Trimin1|352637|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1914bp|location=Sequence derived from alignment at Contig_126:381829..383742- (Tribonema minus UTEX_B_3156 )
ATGGTGTTTGATAGCGAGGGCAGCTTCCCCATGAGCACGCTGAATAGGGA
TGCCGCCAACATTGGCGTCTCAGATGCCGACATGAGGGTCTGTTTCCAGA
CTGGCGAGGTGAGTGAGGATTTGGTCTGTCGTTGCTCCTGCTGCTTGCGA
GCATTGCAACATGACTGATTGGACACAGCGCATGGGCTATGGAGACCATG
CCGCGCACGCTTGGCTGAATACACCCACGCCTTCTGATCTGGCAATGGAG
GCTGGTGATCGTGCGCAGCTCGAGTGTTCGTGCCAGATCATTCCAGCAGG
CGGCATTTCCCAACGACCTGCATCACCGACATGTGAGATTTTGCGGTGAA
GCATGCCTGAGCAACGTAGGACTGTCCTCCGCATAGTATGCCTTTCAAGT
ATAGCATTTGTGTACTACAGACACTCTCCCAACAGTATGTTTGCTTGCGG
GGGTCAGCAGCCACCGCAATATGTTCTGGCCGATGCCTGATGCTGACGTT
CCCACCGCCGTGTGTCATGTGTTGCGCGTCGCAGTGCGAAGTGCCACAGG
AGTTTGAACAGTCCATGACCAAGGCCTTCAATCAGATGCCCTACATGGCC
AGCAAGCAGACCATGACCGTCGTGGATGGTGACTCTGAGTACGAGGAGCC
AATCAACTGGTGAGTCTGCGCTGCGATGTTGAAGTTCAGAAGTTGAAAGC
GCATACAGTATGATATGTCACAGAGGGCGGGATACTGCAGCCGTCAATGC
CGACTGGCGTATGCATCTTGGCGGACTTCGCTATTGCACGTTCGATGGGC
GTGCCTGCTACATAGGACCTGCCGCGTAATAGAACGCGAGCGTGAGGGGG
CTGAAAGGAAGGTGTGTGCATGTAATTTGTGCAGCATCTGCATACAGTGC
ACATGATTAGCCTGTGTCCAAACGTGTTGATAATGCAGCACGCGCTCAAA
GCACATCATGTTTGCACACATCGGGAAAGCACCGGTTCATAAAATTGCTG
AAGCAGCACTACCGTGAGCGGGATGCTGAGATGTTGCATCGCGTCCTGCT
CAGCCCTTCAAGGTGCCAGAAAGCTCCATGCTCAACTCAAGGCAATGGTC
AACTCAAGGCAGCAACTTGACAGTGCTGCTCAGCGCCGCAATTGCCTGTG
ATCATACCAGCCTATCGCAGCGTGCTTCACCGTATGAACACCCCCAGCGG
CGCCCGTACTCAACAGCGCCGTGCGCTGCAGTGGGTATCGATGTGTACCC
AGAAAAGGAATTGCGCCGCCGTCAGCCGCACAGAGACGCTTGGCGCGCGT
CACGCGCACAGAGCCGTTTGGCACGCGCGCTCGCTGCTGAGCACTGGCTC
GATGCTGATGTACCGCTGCACTGCGCCCACACCCACCGCAGGGCCGCGCA
GTGGATCGACGCGGATCTAGAGGGCAACTTTCCAGTCACGGGCGGCGGCG
GCGCGGCTGCGGAGGAGTTCAGCATCTAAGTAGAGGAGCCGGCAAGGAGC
GTCACCGGAGCGGCGCTGGGTACATAGAGCCCAGCTGGCTGTTGCAGTAG
AGTTTCCACGGCAAGGCCGTAGCGGCGCGGCCGCCAAGGAGGCTGGTGTC
AAGGCTAGACTTCAGCGTGGGGGCTACGGTGCCAGTAAGAGGCGTCACCG
GGGTGGTCCTAGTATGTATGTTAAGCTGAGTGATGGGAGTGAGGGCTGCG
CACTGGCGCATTGTAGACAGGGCGAGAGAAAATAGGGCAGCACAGCAGGC
GCCATAGCTGCCGGGCCTTGAAATGTGCTGCCGTGGCGGAAGGTGTGCCG
TGCGGAACTTGGGGCATGGTATGACATGCGGCCACACCGGCTGCCTGTTG
AAGCTATTTTAGAAGTGTTTTACTACGTGACAGCACGCATTCACGGTGTA
AATGTACCAAGTTG
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Coding sequence (CDS) from alignment at Contig_126:381829..383742-

>mRNA_13587 ID=mRNA_13587|Name=jgi.p|Trimin1|352637|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_126:381829..383742- (Tribonema minus UTEX_B_3156 )
ATGGTGTTTGATAGCGAGGGCAGCTTCCCCATGAGCACGCTGAATAGGGA
TGCCGCCAACATTGGCGTCTCAGATGCCGACATGAGGGTCTGTTTCCAGA
CTGGCGAGTGCGAAGTGCCACAGGAGTTTGAACAGTCCATGACCAAGGCC
TTCAATCAGATGCCCTACATGGCCAGCAAGCAGACCATGACCGTCGTGGA
TGGTGACTCTGAGTACGAGGAGCCAATCAACTGGGCCGCGCAGTGGATCG
ACGCGGATCTAGAGGGCAACTTTCCAGTCACGGGCGGCGGCGGCGCGGCT
GCGGAGGAGTTCAGCATCTAA
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