mRNA_13533 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133730
Unique NamemRNA_13533
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|133730 vs. uniprot
Match: A0A835YKW5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW5_9STRA)

HSP 1 Score: 242 bits (617), Expect = 5.640e-81
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 
Query:    1 RDNMLTSLSGVSSLRHLQSLNACNNSITSIDDTWDLPGASDSSSLTCLDLSENNLQTLDGLCSPALARLRCLSVRHNELCTLPPTFGDLDVLEELDVSENAITSVAATYKMQHLRVLNCEHN 366
            RDNMLTSLSGVSSLRHLQSLNACNNSITSIDDTWDLPGASDSSSLTCLDLSENNLQTLDGLCSPALARLRCLSVRHNELCTLPPTFGDLDVLEELDVSENAITSVAATYKMQHLRVLNCEHN
Sbjct:    1 RDNMLTSLSGVSSLRHLQSLNACNNSITSIDDTWDLPGASDSSSLTCLDLSENNLQTLDGLCSPALARLRCLSVRHNELCTLPPTFGDLDVLEELDVSENAITSVAATYKMQHLRVLNCEHN 122
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133730 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YKW5_9STRA5.640e-81100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_91contigContig_91:587226..587732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133730|gw1.91.27.1
KEGG TC1.A.25.3
BRITEko00000,ko02000
KEGG koko:K22038
DescriptionLeucine-rich repeat-containing protein 8D-like isoform X1
COG categoryS
Max annot lvl33208|Metazoa
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota,39VPW@33154|Opisthokonta,3BZ8H@33208|Metazoa,3DDT9@33213|Bilateria,487H3@7711|Chordata,49AKU@7742|Vertebrata,49XPT@7898|Actinopterygii
Evalue0.00016
Seed ortholog244447.XP_008328947.1
Hectar predicted targeting categoryother localisation
TranscriptId134052
TrackFilteredModels1
ProteinId133730
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133730gene_13533Tribonema minus UTEX_B_3156 geneContig_91 587226..587732 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13533_1exon_13533_1Tribonema minus UTEX_B_3156 exonContig_91 587226..587377 +
exon_13533_2exon_13533_2Tribonema minus UTEX_B_3156 exonContig_91 587519..587732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13533CDS_13533Tribonema minus UTEX_B_3156 CDSContig_91 587226..587377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133730Trimin1|133730|gw1.91.27.1Tribonema minus UTEX_B_3156 polypeptideContig_91 587226..587732 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13533 ID=mRNA_13533|Name=jgi.p|Trimin1|133730|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=366bp|location=Sequence derived from alignment at Contig_91:587226..587732+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGGACAACATGCTGACGTCATTGTCAGGTGTGTCCAGCCTACGCCACCT
GCAGTCTCTGAACGCCTGCAACAACAGCATTACCTCTATTGATGACACAT
GGGATCTGCCTGGAGCGTCAGACAGCAGCAGCCTGACGTGTCTGGACCTC
AGCGAGAACAACTTGCAGACGCTGGACGGGCTGTGCAGCCCTGCGCTCGC
CCGCCTGCGGTGCCTGAGTGTGCGGCACAATGAGCTTTGCACTCTGCCGC
CAACTTTCGGGGACCTCGATGTATTGGAGGAATTGGATGTGTCTGAGAAT
GCCATCACATCCGTGGCTGCCACTTACAAGATGCAGCATCTCAGAGTCCT
CAACTGTGAGCACAAC
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protein sequence of jgi.p|Trimin1|133730

>Trimin1|133730|gw1.91.27.1 ID=Trimin1|133730|gw1.91.27.1|Name=jgi.p|Trimin1|133730|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=122bp
RDNMLTSLSGVSSLRHLQSLNACNNSITSIDDTWDLPGASDSSSLTCLDL
SENNLQTLDGLCSPALARLRCLSVRHNELCTLPPTFGDLDVLEELDVSEN
AITSVAATYKMQHLRVLNCEHN
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mRNA from alignment at Contig_91:587226..587732+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13533 ID=mRNA_13533|Name=jgi.p|Trimin1|133730|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=507bp|location=Sequence derived from alignment at Contig_91:587226..587732+ (Tribonema minus UTEX_B_3156 )
AGGGACAACATGCTGACGTCATTGTCAGGTGTGTCCAGCCTACGCCACCT
GCAGTCTCTGAACGCCTGCAACAACAGCATTACCTCTATTGATGACACAT
GGGATCTGCCTGGAGCGTCAGACAGCAGCAGCCTGACGTGTCTGGACCTC
AGGTACGATGGCCAAAGTGAACTCTCTAATTTCCCGCCCTAGTCTTTTGG
CTGTGCAACATTGCATGACTTGTTGCACCGCAAACATCAATTTCTTTGAT
TCCTTACCGCTGTCTTCAAATTGCTGCTTGGTTGTTGATGCAGCGAGAAC
AACTTGCAGACGCTGGACGGGCTGTGCAGCCCTGCGCTCGCCCGCCTGCG
GTGCCTGAGTGTGCGGCACAATGAGCTTTGCACTCTGCCGCCAACTTTCG
GGGACCTCGATGTATTGGAGGAATTGGATGTGTCTGAGAATGCCATCACA
TCCGTGGCTGCCACTTACAAGATGCAGCATCTCAGAGTCCTCAACTGTGA
GCACAAC
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Coding sequence (CDS) from alignment at Contig_91:587226..587732+

>mRNA_13533 ID=mRNA_13533|Name=jgi.p|Trimin1|133730|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=366bp|location=Sequence derived from alignment at Contig_91:587226..587732+ (Tribonema minus UTEX_B_3156 )
AGGGACAACATGCTGACGTCATTGTCAGGTGTGTCCAGCCTACGCCACCT
GCAGTCTCTGAACGCCTGCAACAACAGCATTACCTCTATTGATGACACAT
GGGATCTGCCTGGAGCGTCAGACAGCAGCAGCCTGACGTGTCTGGACCTC
AGCGAGAACAACTTGCAGACGCTGGACGGGCTGTGCAGCCCTGCGCTCGC
CCGCCTGCGGTGCCTGAGTGTGCGGCACAATGAGCTTTGCACTCTGCCGC
CAACTTTCGGGGACCTCGATGTATTGGAGGAATTGGATGTGTCTGAGAAT
GCCATCACATCCGTGGCTGCCACTTACAAGATGCAGCATCTCAGAGTCCT
CAACTGTGAGCACAAC
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