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Homology
BLAST of jgi.p|Trimin1|170352 vs. uniprot
Match: A0A835YM01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM01_9STRA) HSP 1 Score: 125 bits (313), Expect = 3.700e-30 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 1
Query: 1 MPCLLHRHRSLPLLQWAFANGCPKDRVMAWGARSAXXXXXXXXXXXXXXWDEHTAARAALGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVRYRRXXXXXXXXXXXXXXXXXXXAAAARADRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCASVAATAEIRAWVLTNSAPRGGKAVRQRLRWD 906
MPCLLHRHRSLPLLQWAFANGCPKDRVMAWGARSAXXXXXXXXXXXXXXWDEHTAARAALGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVRYRRXXXXXXXXXXXXXXXXXXXAAAARADRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCASVAATAEIRAWVLTNSAPRGGKAVRQRLRWD
Sbjct: 1 MPCLLHRHRSLPLLQWAFANGCPKDRVMAWGARSAXXXXXXXXXXXXXXWDEHTAARAALGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVRYRRXXXXXXXXXXXXXXXXXXXAAAARADRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCASVAATAEIRAWVLTNSAPRGGKAVRQRLRWD 302
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|170352|e_gw1.72.28.1 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 170674 |
| Track | FilteredModels1 |
| ProteinId | 170352 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13461 ID=mRNA_13461|Name=jgi.p|Trimin1|170352|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=909bp|location=Sequence derived from alignment at Contig_72:502183..505066+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGCCTTGCCTCCTCCACCGCCACAGATCTCTGCCGCTGCTGCAGTGGGC
GTTCGCGAACGGCTGCCCGAAGGACCGCGTCATGGCGTGGGGCGCGCGGT
CGGCGTCGCTTGAAGTTCTGCGCTGGGCGCGCGCCAACGGGTGCCCATGG
GACGAGCACACGGCGGCGCGAGCAGCTCTGGGAGGGCGGCTGGACGTTCT
GCAGTGGGCGCGGTCGGAGGGGTGCCCGTGGGACGAGTTCACGTGCAGCA
AGGCGGCGCAGGGCGGGCACCTCGCGGTGCTGCGCTGGGCGCGCGCGCAC
GGCGCGCCCTGGGACCGCGGCGTCTGCGCCGCGGCAGCGCTCAGCGGTCA
CATCGCAGTGCTCGACTTTGCGCACGCGCACGGCTGCCCGATGGACGCGT
ACACGTGCTACAACGCGGCGGCGGCGGGGCGCGTCGACGTGCTGGACTGG
GCGCGCTCCCGGAACGTTCCGTGGGGGGCGCCGACGTGCGCCGCGGTGCG
TTACAGGCGCGTGGACGTGCTGGACTGGGCGCGCTCCCGGAACGTTCCGT
GGGGGGCGCCGACGTGCGCCGCGGCGGCGCGCGCGGACCGGCTGGAGGCG
CTGCAGTGGGCGCACGCGCACGGGTGCCCGATGGACCGCGACACGTGCAG
CGGCGCGGCGCGCAACGGGCACCTGGCCGTGCTGCGGTGGGCGCGCGAGA
ACGGCTGCCCCTGGGATACGGAGACCACGAGAGCGGCGGCGCAGGCGGGC
CACCTCGATGTGCTCAAGTATGCGCGTGCGAACGGCGCGCCGTGGGACGC
CGACGTCTGCGCGAGCGTCGCCGCCACCGCGGAGATACGCGCGTGGGTGC
TGACCAATTCCGCGCCGCGCGGGGGCAAGGCGGTGCGGCAGCGGCTGCGA
TGGGACTGA back to topprotein sequence of jgi.p|Trimin1|170352 >Trimin1|170352|e_gw1.72.28.1 ID=Trimin1|170352|e_gw1.72.28.1|Name=jgi.p|Trimin1|170352|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=303bp
MPCLLHRHRSLPLLQWAFANGCPKDRVMAWGARSASLEVLRWARANGCPW
DEHTAARAALGGRLDVLQWARSEGCPWDEFTCSKAAQGGHLAVLRWARAH
GAPWDRGVCAAAALSGHIAVLDFAHAHGCPMDAYTCYNAAAAGRVDVLDW
ARSRNVPWGAPTCAAVRYRRVDVLDWARSRNVPWGAPTCAAAARADRLEA
LQWAHAHGCPMDRDTCSGAARNGHLAVLRWARENGCPWDTETTRAAAQAG
HLDVLKYARANGAPWDADVCASVAATAEIRAWVLTNSAPRGGKAVRQRLR
WD* back to topmRNA from alignment at Contig_72:502183..505066+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_13461 ID=mRNA_13461|Name=jgi.p|Trimin1|170352|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2884bp|location=Sequence derived from alignment at Contig_72:502183..505066+ (Tribonema minus UTEX_B_3156 )
ATGCCTTGCCTCCTCCACCGCCACAGATCTCTGCCGCTGCTGCAGTGGGC
GTTCGCGAACGGCTGCCCGAAGGACCGCGTCATGGCGTGGGGCGCGCGGT
CGGCGTCGCTTGAAGTTCTGCGCTGGGCGCGCGCCAACGGGTGCCCATGG
GACGAGCACACGGCGGCGCGAGCAGCTCTGGGAGGGCGGCTGGACGTTCT
GCAGTGGGCGCGGTCGGAGGGGTGCCCGTGGGACGAGTTCACGTGCAGGT
CAGTGGACTGGGTTCAGTGTACTGTGAAGTTACTGCAGTGGGCGAAGGGT
GCCCGTGGGACGAGTTCACGTGCAGGTCAGTGGACTGTGTACTGAGAATA
GGTGGGACGAGTTCACCTGCAGGTCAGTGGACTGGGGTCGGGGTACTGTG
AAGTGGTCCCATGTACTGTGAAGTGGAGGTGGGGAAGGGGTCCGGTCCCA
GGGAAAGTCCGTCAGATGGTGTTTCATTTGCATTCCTGAGGAGAGGGGAG
CGATGCTGTGGCCGGTGTTAACGGTGGCGTAGACCGTAGACGGTCCCCCG
ACGCAAGAACTCATTTGAGGGGTCAGTTTCCAGATTGGGCAGCCCAGCCC
TTTGACGCCGCCTCAGGAAAGCAGCGTCTGCACAATGAGCAACATTACAT
TGATTGCTCACCAACCCTTTCTCTCGAACGCATGCCCACGCCCACTGCGC
GTCACGGCCGTCTCACTACCGTGCAAGACACACAAGCTCACACACACACG
CACACCGCCGGTCGTGGATCGCCCCCCGCCACCCCGCAGCAAGGCGGCGC
AGGGCGGGCACCTCGCAGTGCTGCGCTGGGTTACGCTACTTACATACCTA
CCACAGCAAGGCGCACACGCACTGACACCGCCGATCGCGATCGCCTCCCC
GCCACCCCCGCAGCAAGGCGGCGCAGGGCGGGCACCTCGCGGTGCTGCGC
TGGGCGCGCGCGCACGGCGCGCCCTGGGACCGCGGCGTCTGCGCCGCGGC
AGCGCTCAGCGGTCACATCGCAGTGCTCGACTTTGCGCACGCGCACGGCT
GCCCGATGGACGCGTACACGTGCTACAACGCGGCGGCGGCGGGGCGCGTC
GACGTGCTGGACTGGGCGCGCTCCCGGAACGTTCCGTGGGGGGCGCCGAC
GTGCGCCGCGGTGCGTGTCAGCGCTCGCATGCATACCGTCTGCCAGCCGT
GAATCAGCATGGTGCATGCGCGCTCAGTGGCGACACTCAAGTGTTGGGAC
ATTCACTTGTTACTCCTACTCGTAGAAGCACTCGTACACAGGTACTCGTA
CAGTACAGGCGCGTGGACGTGCTGGACTGGGCGCGCTCCCGGAACGTTCC
GTGGGGGGCGCCGACGTGCGCCGCGGTGCGTGTCAGGTTTCAGCGCGCGG
ATACGTACCGCTTGTCACATGCGCGCATCAGCATCAAACATGCAGTGGGT
GGGGGGCGCCGACGTGCGCCGCGGTGCGTGCCAGCGCTTAAATATGGAGC
AGTTGTCAACCAAGAATTAGCATCATGCTTGCGTGCACTGTAGCAACGCT
TGCTTCGAGCGCAGGTTGCCCAGGCCCCACTCTGCGGCAAGGGGGTGGAG
GGGGGGGTTGGTGGACCTCTGAATTTTTCTGGAAATCACCCACTTGCTTG
AGAATTCAGCAGTTGCAAAAAGAGCCTGCTGTGTCGCAGGAACAACCCTG
AGATTGATTGTACTCTGTTTTGCATGCTGAGCGCCACAGACGTTGTACAC
CGTGCATAAGCTGCCTCTGCACGCCCTTTGGCAGAATATTGCGCACCCGG
CACTCCTTGCACCATCTGTCAGTGGCGGTCAACCAGTGCTACGCCACCCC
AGTGACTTCCTGTCCCCCCTGCCACTTCCTCATACTTGGAAGCTATGTGA
CATGCATCCATTTAGGCAACCGCTTTCTGCCGTGGTCTCGCACGTATGCT
GCCACCCTGTTCTGCCTGGCGTCATCACCGCCACACTGTGTGACCTGGAC
ACAGTGACCCTGTCAGTGGTGGGCAACCACTGCTATGTGACGCCAATGGC
TACGGTCCCCCCTGCCAGCTCCTCCATCTTCGAAGTATATGCAATGCATA
CATTTGAGCACCGCGTGCTACTGCTGTGTGACCCTGCAGGCGGCGCGCGC
GGACCGGCTGGAGGCGCTGCAGTGGGCGCACGCGCACGGGTGCCCGATGG
ACCGCGACACGTGCAGCGGCGCGGCGCGCAACGGGCACCTGGCCGTGCTG
CGGTGGGCGCGCGAGAACGGCTGCCCCTGGGTGAGCGGCCGTGTGTTGTT
GTCGAAGTGATTGTTGTTGAAGTGCGAAGCTGTTGAGGCGAGCGTGATAG
TGAAGTGCGGCAAGGCACGGGGCGCATTTGGCGGCGTCGGCTGCAGCTGC
GCTGGAGATCCGCATGTGATGTTTGCGCCTCGTGTGCGGTACGCGTGGCG
GTGCGGTCGCAAGCGAACACTCTCTGAGTACATTGCGTGTCTGAAGCATG
CGCATCTGCATGGAATGGTGTGAGGGCGGCAACTCGGTGATGCAGCAGAT
GCGCCTGCACACTCTCACAGTGCAAGCACTCCACGCAGTTGGTTCACTCC
GAGCCTCGCTTCCCTTGCGCACGCCACTGACCCATACTTCAACTCCGGTC
TTCACCCTTCACCCCACACACGCTGCATCCCTTGCCCAGGATACGGAGAC
CACGAGAGCGGCGGCGCAGGCGGGCCACCTCGATGTGCTCAAGTATGCGC
GTGCGAACGGCGCGCCGTGGGACGCCGACGTCTGCGCGAGCGTCGCCGCC
ACCGCGGAGATACGCGCGTGGGTGCTGACCAATTCCGCGCCGCGCGGGGG
CAAGGCGGTGCGGCAGCGGCTGCGATGGGACTGA back to topCoding sequence (CDS) from alignment at Contig_72:502183..505066+ >mRNA_13461 ID=mRNA_13461|Name=jgi.p|Trimin1|170352|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=909bp|location=Sequence derived from alignment at Contig_72:502183..505066+ (Tribonema minus UTEX_B_3156 )
ATGCCTTGCCTCCTCCACCGCCACAGATCTCTGCCGCTGCTGCAGTGGGC
GTTCGCGAACGGCTGCCCGAAGGACCGCGTCATGGCGTGGGGCGCGCGGT
CGGCGTCGCTTGAAGTTCTGCGCTGGGCGCGCGCCAACGGGTGCCCATGG
GACGAGCACACGGCGGCGCGAGCAGCTCTGGGAGGGCGGCTGGACGTTCT
GCAGTGGGCGCGGTCGGAGGGGTGCCCGTGGGACGAGTTCACGTGCAGCA
AGGCGGCGCAGGGCGGGCACCTCGCGGTGCTGCGCTGGGCGCGCGCGCAC
GGCGCGCCCTGGGACCGCGGCGTCTGCGCCGCGGCAGCGCTCAGCGGTCA
CATCGCAGTGCTCGACTTTGCGCACGCGCACGGCTGCCCGATGGACGCGT
ACACGTGCTACAACGCGGCGGCGGCGGGGCGCGTCGACGTGCTGGACTGG
GCGCGCTCCCGGAACGTTCCGTGGGGGGCGCCGACGTGCGCCGCGGTGCG
TTACAGGCGCGTGGACGTGCTGGACTGGGCGCGCTCCCGGAACGTTCCGT
GGGGGGCGCCGACGTGCGCCGCGGCGGCGCGCGCGGACCGGCTGGAGGCG
CTGCAGTGGGCGCACGCGCACGGGTGCCCGATGGACCGCGACACGTGCAG
CGGCGCGGCGCGCAACGGGCACCTGGCCGTGCTGCGGTGGGCGCGCGAGA
ACGGCTGCCCCTGGGATACGGAGACCACGAGAGCGGCGGCGCAGGCGGGC
CACCTCGATGTGCTCAAGTATGCGCGTGCGAACGGCGCGCCGTGGGACGC
CGACGTCTGCGCGAGCGTCGCCGCCACCGCGGAGATACGCGCGTGGGTGC
TGACCAATTCCGCGCCGCGCGGGGGCAAGGCGGTGCGGCAGCGGCTGCGA
TGGGACTGA back to top
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