mRNA_13461 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|170352
Unique Name	mRNA_13461
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|170352 vs. uniprot
Match: A0A835YM01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM01_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.700e-30
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 1

Query:    1 MPCLLHRHRSLPLLQWAFANGCPKDRVMAWGARSAXXXXXXXXXXXXXXWDEHTAARAALGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVRYRRXXXXXXXXXXXXXXXXXXXAAAARADRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCASVAATAEIRAWVLTNSAPRGGKAVRQRLRWD 906
            MPCLLHRHRSLPLLQWAFANGCPKDRVMAWGARSAXXXXXXXXXXXXXXWDEHTAARAALGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVRYRRXXXXXXXXXXXXXXXXXXXAAAARADRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCASVAATAEIRAWVLTNSAPRGGKAVRQRLRWD
Sbjct:    1 MPCLLHRHRSLPLLQWAFANGCPKDRVMAWGARSAXXXXXXXXXXXXXXWDEHTAARAALGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVRYRRXXXXXXXXXXXXXXXXXXXAAAARADRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCASVAATAEIRAWVLTNSAPRGGKAVRQRLRWD 302

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|170352 vs. uniprot

BLAST of jgi.p|Trimin1|170352 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YM01_9STRA	3.700e-30	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_72	contig	Contig_72:502183..505066 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|170352\|e_gw1.72.28.1
Hectar predicted targeting category	other localisation
TranscriptId	170674
Track	FilteredModels1
ProteinId	170352

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|170352	gene_13461	Tribonema minus UTEX_B_3156	gene	Contig_72 502183..505066 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|170352	Trimin1\|170352\|e_gw1.72.28.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_72 502183..505066 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13461_1	exon_13461_1	Tribonema minus UTEX_B_3156	exon	Contig_72 502183..502430 +
exon_13461_2	exon_13461_2	Tribonema minus UTEX_B_3156	exon	Contig_72 503096..503348 +
exon_13461_3	exon_13461_3	Tribonema minus UTEX_B_3156	exon	Contig_72 503486..503557 +
exon_13461_4	exon_13461_4	Tribonema minus UTEX_B_3156	exon	Contig_72 504322..504462 +
exon_13461_5	exon_13461_5	Tribonema minus UTEX_B_3156	exon	Contig_72 504872..505066 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13461	CDS_13461	Tribonema minus UTEX_B_3156	CDS	Contig_72 502183..502430 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_72:502183..505066+
coding sequence from alignment at Contig_72:502183..505066+

spliced messenger RNA

>mRNA_13461 ID=mRNA_13461|Name=jgi.p|Trimin1|170352|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=909bp|location=Sequence derived from alignment at Contig_72:502183..505066+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTGCCTCCTCCACCGCCACAGATCTCTGCCGCTGCTGCAGTGGGC
GTTCGCGAACGGCTGCCCGAAGGACCGCGTCATGGCGTGGGGCGCGCGGT
CGGCGTCGCTTGAAGTTCTGCGCTGGGCGCGCGCCAACGGGTGCCCATGG
GACGAGCACACGGCGGCGCGAGCAGCTCTGGGAGGGCGGCTGGACGTTCT
GCAGTGGGCGCGGTCGGAGGGGTGCCCGTGGGACGAGTTCACGTGCAGCA
AGGCGGCGCAGGGCGGGCACCTCGCGGTGCTGCGCTGGGCGCGCGCGCAC
GGCGCGCCCTGGGACCGCGGCGTCTGCGCCGCGGCAGCGCTCAGCGGTCA
CATCGCAGTGCTCGACTTTGCGCACGCGCACGGCTGCCCGATGGACGCGT
ACACGTGCTACAACGCGGCGGCGGCGGGGCGCGTCGACGTGCTGGACTGG
GCGCGCTCCCGGAACGTTCCGTGGGGGGCGCCGACGTGCGCCGCGGTGCG
TTACAGGCGCGTGGACGTGCTGGACTGGGCGCGCTCCCGGAACGTTCCGT
GGGGGGCGCCGACGTGCGCCGCGGCGGCGCGCGCGGACCGGCTGGAGGCG
CTGCAGTGGGCGCACGCGCACGGGTGCCCGATGGACCGCGACACGTGCAG
CGGCGCGGCGCGCAACGGGCACCTGGCCGTGCTGCGGTGGGCGCGCGAGA
ACGGCTGCCCCTGGGATACGGAGACCACGAGAGCGGCGGCGCAGGCGGGC
CACCTCGATGTGCTCAAGTATGCGCGTGCGAACGGCGCGCCGTGGGACGC
CGACGTCTGCGCGAGCGTCGCCGCCACCGCGGAGATACGCGCGTGGGTGC
TGACCAATTCCGCGCCGCGCGGGGGCAAGGCGGTGCGGCAGCGGCTGCGA
TGGGACTGA

protein sequence of jgi.p|Trimin1|170352

>Trimin1|170352|e_gw1.72.28.1 ID=Trimin1|170352|e_gw1.72.28.1|Name=jgi.p|Trimin1|170352|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=303bp
MPCLLHRHRSLPLLQWAFANGCPKDRVMAWGARSASLEVLRWARANGCPW
DEHTAARAALGGRLDVLQWARSEGCPWDEFTCSKAAQGGHLAVLRWARAH
GAPWDRGVCAAAALSGHIAVLDFAHAHGCPMDAYTCYNAAAAGRVDVLDW
ARSRNVPWGAPTCAAVRYRRVDVLDWARSRNVPWGAPTCAAAARADRLEA
LQWAHAHGCPMDRDTCSGAARNGHLAVLRWARENGCPWDTETTRAAAQAG
HLDVLKYARANGAPWDADVCASVAATAEIRAWVLTNSAPRGGKAVRQRLR
WD*

mRNA from alignment at Contig_72:502183..505066+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13461 ID=mRNA_13461|Name=jgi.p|Trimin1|170352|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2884bp|location=Sequence derived from alignment at Contig_72:502183..505066+ (Tribonema minus UTEX_B_3156 )
ATGCCTTGCCTCCTCCACCGCCACAGATCTCTGCCGCTGCTGCAGTGGGC
GTTCGCGAACGGCTGCCCGAAGGACCGCGTCATGGCGTGGGGCGCGCGGT
CGGCGTCGCTTGAAGTTCTGCGCTGGGCGCGCGCCAACGGGTGCCCATGG
GACGAGCACACGGCGGCGCGAGCAGCTCTGGGAGGGCGGCTGGACGTTCT
GCAGTGGGCGCGGTCGGAGGGGTGCCCGTGGGACGAGTTCACGTGCAGGT
CAGTGGACTGGGTTCAGTGTACTGTGAAGTTACTGCAGTGGGCGAAGGGT
GCCCGTGGGACGAGTTCACGTGCAGGTCAGTGGACTGTGTACTGAGAATA
GGTGGGACGAGTTCACCTGCAGGTCAGTGGACTGGGGTCGGGGTACTGTG
AAGTGGTCCCATGTACTGTGAAGTGGAGGTGGGGAAGGGGTCCGGTCCCA
GGGAAAGTCCGTCAGATGGTGTTTCATTTGCATTCCTGAGGAGAGGGGAG
CGATGCTGTGGCCGGTGTTAACGGTGGCGTAGACCGTAGACGGTCCCCCG
ACGCAAGAACTCATTTGAGGGGTCAGTTTCCAGATTGGGCAGCCCAGCCC
TTTGACGCCGCCTCAGGAAAGCAGCGTCTGCACAATGAGCAACATTACAT
TGATTGCTCACCAACCCTTTCTCTCGAACGCATGCCCACGCCCACTGCGC
GTCACGGCCGTCTCACTACCGTGCAAGACACACAAGCTCACACACACACG
CACACCGCCGGTCGTGGATCGCCCCCCGCCACCCCGCAGCAAGGCGGCGC
AGGGCGGGCACCTCGCAGTGCTGCGCTGGGTTACGCTACTTACATACCTA
CCACAGCAAGGCGCACACGCACTGACACCGCCGATCGCGATCGCCTCCCC
GCCACCCCCGCAGCAAGGCGGCGCAGGGCGGGCACCTCGCGGTGCTGCGC
TGGGCGCGCGCGCACGGCGCGCCCTGGGACCGCGGCGTCTGCGCCGCGGC
AGCGCTCAGCGGTCACATCGCAGTGCTCGACTTTGCGCACGCGCACGGCT
GCCCGATGGACGCGTACACGTGCTACAACGCGGCGGCGGCGGGGCGCGTC
GACGTGCTGGACTGGGCGCGCTCCCGGAACGTTCCGTGGGGGGCGCCGAC
GTGCGCCGCGGTGCGTGTCAGCGCTCGCATGCATACCGTCTGCCAGCCGT
GAATCAGCATGGTGCATGCGCGCTCAGTGGCGACACTCAAGTGTTGGGAC
ATTCACTTGTTACTCCTACTCGTAGAAGCACTCGTACACAGGTACTCGTA
CAGTACAGGCGCGTGGACGTGCTGGACTGGGCGCGCTCCCGGAACGTTCC
GTGGGGGGCGCCGACGTGCGCCGCGGTGCGTGTCAGGTTTCAGCGCGCGG
ATACGTACCGCTTGTCACATGCGCGCATCAGCATCAAACATGCAGTGGGT
GGGGGGCGCCGACGTGCGCCGCGGTGCGTGCCAGCGCTTAAATATGGAGC
AGTTGTCAACCAAGAATTAGCATCATGCTTGCGTGCACTGTAGCAACGCT
TGCTTCGAGCGCAGGTTGCCCAGGCCCCACTCTGCGGCAAGGGGGTGGAG
GGGGGGGTTGGTGGACCTCTGAATTTTTCTGGAAATCACCCACTTGCTTG
AGAATTCAGCAGTTGCAAAAAGAGCCTGCTGTGTCGCAGGAACAACCCTG
AGATTGATTGTACTCTGTTTTGCATGCTGAGCGCCACAGACGTTGTACAC
CGTGCATAAGCTGCCTCTGCACGCCCTTTGGCAGAATATTGCGCACCCGG
CACTCCTTGCACCATCTGTCAGTGGCGGTCAACCAGTGCTACGCCACCCC
AGTGACTTCCTGTCCCCCCTGCCACTTCCTCATACTTGGAAGCTATGTGA
CATGCATCCATTTAGGCAACCGCTTTCTGCCGTGGTCTCGCACGTATGCT
GCCACCCTGTTCTGCCTGGCGTCATCACCGCCACACTGTGTGACCTGGAC
ACAGTGACCCTGTCAGTGGTGGGCAACCACTGCTATGTGACGCCAATGGC
TACGGTCCCCCCTGCCAGCTCCTCCATCTTCGAAGTATATGCAATGCATA
CATTTGAGCACCGCGTGCTACTGCTGTGTGACCCTGCAGGCGGCGCGCGC
GGACCGGCTGGAGGCGCTGCAGTGGGCGCACGCGCACGGGTGCCCGATGG
ACCGCGACACGTGCAGCGGCGCGGCGCGCAACGGGCACCTGGCCGTGCTG
CGGTGGGCGCGCGAGAACGGCTGCCCCTGGGTGAGCGGCCGTGTGTTGTT
GTCGAAGTGATTGTTGTTGAAGTGCGAAGCTGTTGAGGCGAGCGTGATAG
TGAAGTGCGGCAAGGCACGGGGCGCATTTGGCGGCGTCGGCTGCAGCTGC
GCTGGAGATCCGCATGTGATGTTTGCGCCTCGTGTGCGGTACGCGTGGCG
GTGCGGTCGCAAGCGAACACTCTCTGAGTACATTGCGTGTCTGAAGCATG
CGCATCTGCATGGAATGGTGTGAGGGCGGCAACTCGGTGATGCAGCAGAT
GCGCCTGCACACTCTCACAGTGCAAGCACTCCACGCAGTTGGTTCACTCC
GAGCCTCGCTTCCCTTGCGCACGCCACTGACCCATACTTCAACTCCGGTC
TTCACCCTTCACCCCACACACGCTGCATCCCTTGCCCAGGATACGGAGAC
CACGAGAGCGGCGGCGCAGGCGGGCCACCTCGATGTGCTCAAGTATGCGC
GTGCGAACGGCGCGCCGTGGGACGCCGACGTCTGCGCGAGCGTCGCCGCC
ACCGCGGAGATACGCGCGTGGGTGCTGACCAATTCCGCGCCGCGCGGGGG
CAAGGCGGTGCGGCAGCGGCTGCGATGGGACTGA

Coding sequence (CDS) from alignment at Contig_72:502183..505066+

>mRNA_13461 ID=mRNA_13461|Name=jgi.p|Trimin1|170352|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=909bp|location=Sequence derived from alignment at Contig_72:502183..505066+ (Tribonema minus UTEX_B_3156 )
ATGCCTTGCCTCCTCCACCGCCACAGATCTCTGCCGCTGCTGCAGTGGGC
GTTCGCGAACGGCTGCCCGAAGGACCGCGTCATGGCGTGGGGCGCGCGGT
CGGCGTCGCTTGAAGTTCTGCGCTGGGCGCGCGCCAACGGGTGCCCATGG
GACGAGCACACGGCGGCGCGAGCAGCTCTGGGAGGGCGGCTGGACGTTCT
GCAGTGGGCGCGGTCGGAGGGGTGCCCGTGGGACGAGTTCACGTGCAGCA
AGGCGGCGCAGGGCGGGCACCTCGCGGTGCTGCGCTGGGCGCGCGCGCAC
GGCGCGCCCTGGGACCGCGGCGTCTGCGCCGCGGCAGCGCTCAGCGGTCA
CATCGCAGTGCTCGACTTTGCGCACGCGCACGGCTGCCCGATGGACGCGT
ACACGTGCTACAACGCGGCGGCGGCGGGGCGCGTCGACGTGCTGGACTGG
GCGCGCTCCCGGAACGTTCCGTGGGGGGCGCCGACGTGCGCCGCGGTGCG
TTACAGGCGCGTGGACGTGCTGGACTGGGCGCGCTCCCGGAACGTTCCGT
GGGGGGCGCCGACGTGCGCCGCGGCGGCGCGCGCGGACCGGCTGGAGGCG
CTGCAGTGGGCGCACGCGCACGGGTGCCCGATGGACCGCGACACGTGCAG
CGGCGCGGCGCGCAACGGGCACCTGGCCGTGCTGCGGTGGGCGCGCGAGA
ACGGCTGCCCCTGGGATACGGAGACCACGAGAGCGGCGGCGCAGGCGGGC
CACCTCGATGTGCTCAAGTATGCGCGTGCGAACGGCGCGCCGTGGGACGC
CGACGTCTGCGCGAGCGTCGCCGCCACCGCGGAGATACGCGCGTGGGTGC
TGACCAATTCCGCGCCGCGCGGGGGCAAGGCGGTGCGGCAGCGGCTGCGA
TGGGACTGA