mRNA_13450 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350793
Unique NamemRNA_13450
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350793 vs. uniprot
Match: A0A836C8P0_9STRA (Vta1 like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P0_9STRA)

HSP 1 Score: 615 bits (1587), Expect = 1.090e-217
Identity = 371/371 (100.00%), Postives = 371/371 (100.00%), Query Frame = 3 
Query:  171 MNIPPKCKPMVPFVRRAEELDRDDSGLETKVVAYYCRLHAAEVGLGLPDKGPEEEQCIMALVMRLEDDKKVLPQEALDNAQQTCRQFALDVFQRADDEDRAGLADNSTAKAFHAAGVFFDILAQFRKVPLDEECLVKKKYAKAKAMDILKALRSGRTPTPGPVGQAADQGSTGSAPPNLLGGSEASAPPAFAAAGAALADSVNYNIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALADSAPAAPPQTSFYGETVDTGSGAMSSYPASASISAEQNEGKQQQPSPYVDMAAAXXXXXXXRHVAPTAPSPAYSASGSTNAGSRSGGSAAAVKANAIADATEYAKFAIAALEHKDMNLARQRLQAALDCLR 1283
            MNIPPKCKPMVPFVRRAEELDRDDSGLETKVVAYYCRLHAAEVGLGLPDKGPEEEQCIMALVMRLEDDKKVLPQEALDNAQQTCRQFALDVFQRADDEDRAGLADNSTAKAFHAAGVFFDILAQFRKVPLDEECLVKKKYAKAKAMDILKALRSGRTPTPGPVGQAADQGSTGSAPPNLLGGSEASAPPAFAAAGAALADSVNYNIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALADSAPAAPPQTSFYGETVDTGSGAMSSYPASASISAEQNEGKQQQPSPYVDMAAAXXXXXXXRHVAPTAPSPAYSASGSTNAGSRSGGSAAAVKANAIADATEYAKFAIAALEHKDMNLARQRLQAALDCLR
Sbjct:    1 MNIPPKCKPMVPFVRRAEELDRDDSGLETKVVAYYCRLHAAEVGLGLPDKGPEEEQCIMALVMRLEDDKKVLPQEALDNAQQTCRQFALDVFQRADDEDRAGLADNSTAKAFHAAGVFFDILAQFRKVPLDEECLVKKKYAKAKAMDILKALRSGRTPTPGPVGQAADQGSTGSAPPNLLGGSEASAPPAFAAAGAALADSVNYNIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALADSAPAAPPQTSFYGETVDTGSGAMSSYPASASISAEQNEGKQQQPSPYVDMAAAXXXXXXXRHVAPTAPSPAYSASGSTNAGSRSGGSAAAVKANAIADATEYAKFAIAALEHKDMNLARQRLQAALDCLR 371
[Close]
BLAST of jgi.p|Trimin1|350793 vs. uniprot
Match: A0A8J5JH99_9STRA (Vta1 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JH99_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.120e-42
Identity = 81/167 (48.50%), Postives = 116/167 (69.46%), Query Frame = 3 
Query:  162 TAIMNIPPKCKPMVPFVRRAEELDRDDSGLETKVVAYYCRLHAAEVGLGLP--DKGPEEEQCIMALVMRLEDDKKVLPQEALDNAQQTCRQFALDVFQRADDEDRAGLADNSTAKAFHAAGVFFDILAQFRKVPLDEECLVKKKYAKAKAMDILKALRSGRTPTPGP 656
            T  + +PP  K ++PF+RRAEELDRD S  E+K++AY+CR +A E+G+ L   D   E    +++L+ RLED+K  LP    +  ++ C  FAL++F +ADDEDRAG+A+ STA+ F+AAG FFDIL+QF  +   E+   K++Y K KA  ILKA++ G+TPTPGP
Sbjct:    2 TEPVKVPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMEMGIKLRENDASNESTDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFALEIFSKADDEDRAGMANKSTARTFYAAGTFFDILSQFGDI--SEDVAEKRRYCKYKAATILKAIKEGKTPTPGP 166
[Close]
BLAST of jgi.p|Trimin1|350793 vs. uniprot
Match: A0A3R7IJD0_9STRA (Vta1 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IJD0_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.310e-41
Identity = 81/171 (47.37%), Postives = 117/171 (68.42%), Query Frame = 3 
Query:  150 DTQPTAIMNIPPKCKPMVPFVRRAEELDRDDSGLETKVVAYYCRLHAAEVGLGLP--DKGPEEEQCIMALVMRLEDDKKVLPQEALDNAQQTCRQFALDVFQRADDEDRAGLADNSTAKAFHAAGVFFDILAQFRKVPLDEECLVKKKYAKAKAMDILKALRSGRTPTPGP 656
            D QP   + +PP  K ++PFVRRAEELDRD S  E+K++AY+CR +A E+G+ L   D   +    +++L+ RLED+K  LP    +  ++ C  FA+++F +ADDEDRAG+A  STA+ F+AAG FFDIL QF  +   ++ + K++Y K KA  ILKA++ G+TPTPGP
Sbjct:    3 DPQP---VKVPPTFKALLPFVRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDASNDTTDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAGMASKSTARTFYAAGTFFDILNQFGDI--SDDIVEKRRYCKYKAATILKAIKEGQTPTPGP 168
[Close]
BLAST of jgi.p|Trimin1|350793 vs. uniprot
Match: A0A329T423_9STRA (Vta1 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T423_9STRA)

HSP 1 Score: 160 bits (406), Expect = 7.900e-41
Identity = 86/185 (46.49%), Postives = 125/185 (67.57%), Query Frame = 3 
Query:  162 TAIMNIPPKCKPMVPFVRRAEELDRDDSGLETKVVAYYCRLHAAEVGLGLP--DKGPEEEQCIMALVMRLEDDKKVLPQEALDNAQQTCRQFALDVFQRADDEDRAGLADNSTAKAFHAAGVFFDILAQFRKVPLDEECLVKKKYAKAKAMDILKALRSGRTPTPGPVG----QAADQGSTGSAP 698
            T  + +PP  K ++PF+RRAEELDRD S  E+K++AY+CR +A E+G+ L   D   E    +++L+ RLED+K  LP    +  ++ C  FAL++F +ADDEDRAG+A+ STA+ F+AAG FFDIL+QF  +   E+   K++Y K KA  ILKA++ G+TPTPGP      ++A+ GS  +AP
Sbjct:    2 TEPVKVPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMEMGIKLRENDASNESTDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFALEIFSKADDEDRAGMANKSTARTFYAAGTFFDILSQFGDI--SEDVAEKRRYCKYKAATILKAIKEGKTPTPGPPEGLDMKSAEDGSDDAAP 184
[Close]
BLAST of jgi.p|Trimin1|350793 vs. uniprot
Match: A0A0W8AZU1_PHYNI (Vacuolar protein sorting-associated protein VTA1 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8AZU1_PHYNI)

HSP 1 Score: 157 bits (398), Expect = 1.070e-40
Identity = 82/171 (47.95%), Postives = 117/171 (68.42%), Query Frame = 3 
Query:  150 DTQPTAIMNIPPKCKPMVPFVRRAEELDRDDSGLETKVVAYYCRLHAAEVGLGLP--DKGPEEEQCIMALVMRLEDDKKVLPQEALDNAQQTCRQFALDVFQRADDEDRAGLADNSTAKAFHAAGVFFDILAQFRKVPLDEECLVKKKYAKAKAMDILKALRSGRTPTPGP 656
            D QP   + +PP  K ++PF+RRAEELDRD S  E+K++AY+CR +A E+G+ L   D   E    +++L+ RLED+K  LP    +  ++ C  FA+++F +ADDEDRAGLA+  TA+ F+AAG FFDIL QF  +   E+ + K++Y K KA  ILKA++ G+TPTPGP
Sbjct:    3 DPQP---VKVPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDASNEATDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAGLANKGTARTFYAAGTFFDILNQFGDI--SEDVVEKRRYCKYKAATILKAIKEGKTPTPGP 168
[Close]
BLAST of jgi.p|Trimin1|350793 vs. uniprot
Match: H3HDB6_PHYRM (Vta1 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDB6_PHYRM)

HSP 1 Score: 154 bits (390), Expect = 3.200e-40
Identity = 81/171 (47.37%), Postives = 116/171 (67.84%), Query Frame = 3 
Query:  150 DTQPTAIMNIPPKCKPMVPFVRRAEELDRDDSGLETKVVAYYCRLHAAEVGLGLP--DKGPEEEQCIMALVMRLEDDKKVLPQEALDNAQQTCRQFALDVFQRADDEDRAGLADNSTAKAFHAAGVFFDILAQFRKVPLDEECLVKKKYAKAKAMDILKALRSGRTPTPGP 656
            D QP   + +PP  KP++PFVRRAEELDRD S  E+K++AY+CR +A E+G+ L   D   E    +++L+ RLE +K  LP    +  ++ C  FA+++F +ADDEDRAG+A+ STA+ F+AAG FFDIL QF  +   ++   K++Y K KA  ILKA++ G+TP PGP
Sbjct:    3 DPQP---VKVPPAFKPLLPFVRRAEELDRDTSRPESKLIAYFCRQYAMEMGIKLRENDASNEATDYLLSLMDRLETEKNNLPDFTQEEGKEICEDFAIEIFSKADDEDRAGMANKSTARTFYAAGTFFDILNQFGDI--SDDVAEKRRYCKYKAATILKAIKEGKTPEPGP 168
[Close]
BLAST of jgi.p|Trimin1|350793 vs. uniprot
Match: D0MXZ0_PHYIT (Vacuolar protein sorting-associated protein VTA1 n=3 Tax=Phytophthora TaxID=4783 RepID=D0MXZ0_PHYIT)

HSP 1 Score: 158 bits (399), Expect = 5.880e-40
Identity = 82/171 (47.95%), Postives = 118/171 (69.01%), Query Frame = 3 
Query:  150 DTQPTAIMNIPPKCKPMVPFVRRAEELDRDDSGLETKVVAYYCRLHAAEVGLGLP--DKGPEEEQCIMALVMRLEDDKKVLPQEALDNAQQTCRQFALDVFQRADDEDRAGLADNSTAKAFHAAGVFFDILAQFRKVPLDEECLVKKKYAKAKAMDILKALRSGRTPTPGP 656
            D QP   + +PP  K ++PF+RRAEELDRD S  E+K++AY+CR +A E+G+ L   D   E    +++L+ RLE++K  LP    +  ++ C  FA+++F +ADDEDRAG+A  STA+ F+AAG FFDIL+QF    L E+ + K++Y K KA  ILKA++ G+TPTPGP
Sbjct:    2 DPQP---VKVPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDSSNEATDYLLSLMDRLEEEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAGMATKSTARTFYAAGTFFDILSQFGD--LSEDVVEKRRYCKFKAATILKAIKEGKTPTPGP 167
[Close]
BLAST of jgi.p|Trimin1|350793 vs. uniprot
Match: A0A0P1AG58_PLAHL (Hydroxyproline-rich glycoprotein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AG58_PLAHL)

HSP 1 Score: 160 bits (404), Expect = 6.040e-40
Identity = 84/171 (49.12%), Postives = 119/171 (69.59%), Query Frame = 3 
Query:  150 DTQPTAIMNIPPKCKPMVPFVRRAEELDRDDSGLETKVVAYYCRLHAAEVGLGLP--DKGPEEEQCIMALVMRLEDDKKVLPQEALDNAQQTCRQFALDVFQRADDEDRAGLADNSTAKAFHAAGVFFDILAQFRKVPLDEECLVKKKYAKAKAMDILKALRSGRTPTPGP 656
            D QP   + IPP  K ++PF+RRAEELDRD S  E+K++AY+CR +A E+G+ L   D   E    +++L+ RLE++KK LP+   +  ++ C  FA ++F +ADDEDRAG A+ STA+ F+AAG FFDIL QF  +P  E+ + K++Y K KA  ILKA++ G+TPTPGP
Sbjct:    6 DPQP---VRIPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDVSNESTDYLLSLMDRLENEKKSLPEFTQEEGKEICEDFATEIFSKADDEDRAGKANKSTARTFYAAGTFFDILTQFGDIP--EDIVEKRRYCKYKAATILKAVKEGKTPTPGP 171
[Close]
BLAST of jgi.p|Trimin1|350793 vs. uniprot
Match: A0A2D4BVN9_PYTIN (Vacuolar protein sortingassociated protein VTA1 put (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVN9_PYTIN)

HSP 1 Score: 156 bits (395), Expect = 8.100e-40
Identity = 135/380 (35.53%), Postives = 175/380 (46.05%), Query Frame = 3 
Query:  177 IPPKCKPMVPFVRRAEELDRDDSGLETKVVAYYCRLHAAEVGLGLP--DKGPEEEQCIMALVMRLEDDKKVLPQEALDNAQQTCRQFALDVFQRADDEDRAGLADNSTAKAFHAAGVFFDILAQFRKVPLDEECLVKKKYAKAKAMDILKALRSGRTPTPGPVGQ--AADQGSTGSAPPNLLGGSEASAPPAFAAAGAALADSVNYNIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALADSAPAAPPQT-------SFYGETVDTGSGAMSSYPASASISAEQNEGKQQQPSPYVDMAAAXXXXXXXRHVAPTAPSPAYSASGSTNAGSRSGGSAAAVKANAIADATEYAKFAIAALEHKDMNLARQRLQAALDCLR 1283
            IP   K ++PF+RRAEELDRD +  E+K++AY+CR +A E+G+ L   D   E    +++L+ RLEDDK  LP    +  ++ C  FAL+VF +ADDEDRAG AD +TA+ F+AAG F DIL QF +V   E+ L K++Y K KA  ILKA++ G+ PTPGP  +    D   T +  PN  G                + D  N  I                                 A  AP AP Q        SF      TG    S   + A  +  Q       PS +    AA          A T P PA                      N I DA E AKFAIAAL+ KD+ LA QRL+ AL C+R
Sbjct:    5 IPATFKSVLPFIRRAEELDRDTTRPESKLIAYFCRQYAMELGIKLRENDNSNEATNYLLSLMDRLEDDKSKLPVFTQEEGKEICEDFALEVFAKADDEDRAGHADKNTARTFYAAGTFLDILNQFGEV--SEDILEKRRYCKFKAATILKAIKEGQVPTPGPPSEHDTTDSVKTEAPVPNASGDDHP------------MPDVSNVKIE--------------------------------ASPAPVAPEQIQSISAFPSFTQSASITGPFGTSMNESFAPSAPTQPPSNWSSPSQFQHQPAAHFH-------ARTRPGPASQ--------------------NEINDAIECAKFAIAALKVKDVELAVQRLEMALRCIR 311
[Close]
BLAST of jgi.p|Trimin1|350793 vs. uniprot
Match: W2LDM5_PHYPR (Vta1 domain-containing protein n=20 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LDM5_PHYPR)

HSP 1 Score: 157 bits (398), Expect = 1.820e-39
Identity = 82/171 (47.95%), Postives = 117/171 (68.42%), Query Frame = 3 
Query:  150 DTQPTAIMNIPPKCKPMVPFVRRAEELDRDDSGLETKVVAYYCRLHAAEVGLGLP--DKGPEEEQCIMALVMRLEDDKKVLPQEALDNAQQTCRQFALDVFQRADDEDRAGLADNSTAKAFHAAGVFFDILAQFRKVPLDEECLVKKKYAKAKAMDILKALRSGRTPTPGP 656
            D QP   + +PP  K ++PF+RRAEELDRD S  E+K++AY+CR +A E+G+ L   D   E    +++L+ RLED+K  LP    +  ++ C  FA+++F +ADDEDRAGLA+  TA+ F+AAG FFDIL QF  +   E+ + K++Y K KA  ILKA++ G+TPTPGP
Sbjct:    3 DPQP---VKVPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDASNEATDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAGLANKGTARTFYAAGTFFDILNQFGDI--SEDVVEKRRYCKYKAATILKAIKEGKTPTPGP 168
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350793 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8P0_9STRA1.090e-217100.00Vta1 like-domain-containing protein n=1 Tax=Tribon... [more]
A0A8J5JH99_9STRA1.120e-4248.50Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A3R7IJD0_9STRA4.310e-4147.37Vta1 domain-containing protein n=3 Tax=Phytophthor... [more]
A0A329T423_9STRA7.900e-4146.49Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A0W8AZU1_PHYNI1.070e-4047.95Vacuolar protein sorting-associated protein VTA1 n... [more]
H3HDB6_PHYRM3.200e-4047.37Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
D0MXZ0_PHYIT5.880e-4047.95Vacuolar protein sorting-associated protein VTA1 n... [more]
A0A0P1AG58_PLAHL6.040e-4049.12Hydroxyproline-rich glycoprotein n=1 Tax=Plasmopar... [more]
A0A2D4BVN9_PYTIN8.100e-4035.53Vacuolar protein sortingassociated protein VTA1 pu... [more]
W2LDM5_PHYPR1.820e-3947.95Vta1 domain-containing protein n=20 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_72contigContig_72:415916..422578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350793|estExt_Genemark1.C_Ctg_720037
BRITEko00000,ko00001,ko04131
KEGG Pathwayko04144,map04144
KEGG koko:K12199
DescriptionVta1 like
COG categoryS
Max annot lvl4776|Peronosporales
EggNOG OGsKOG0917@1|root,KOG0917@2759|Eukaryota,3Q7C6@4776|Peronosporales
Evalue2.16e-42
Seed ortholog4787.PITG_03577T0
Hectar predicted targeting categoryother localisation
TranscriptId351115
TrackFilteredModels1
ProteinId350793
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350793gene_13450Tribonema minus UTEX_B_3156 geneContig_72 415916..422578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350793Trimin1|350793|estExt_Genemark1.C_Ctg_720037Tribonema minus UTEX_B_3156 polypeptideContig_72 416086..422226 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13450_1exon_13450_1Tribonema minus UTEX_B_3156 exonContig_72 415916..416328 +
exon_13450_2exon_13450_2Tribonema minus UTEX_B_3156 exonContig_72 418425..418613 +
exon_13450_3exon_13450_3Tribonema minus UTEX_B_3156 exonContig_72 419170..419235 +
exon_13450_4exon_13450_4Tribonema minus UTEX_B_3156 exonContig_72 419963..420082 +
exon_13450_5exon_13450_5Tribonema minus UTEX_B_3156 exonContig_72 420154..420445 +
exon_13450_6exon_13450_6Tribonema minus UTEX_B_3156 exonContig_72 421101..421224 +
exon_13450_7exon_13450_7Tribonema minus UTEX_B_3156 exonContig_72 422145..422578 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13450UTR5_13450Tribonema minus UTEX_B_3156 five_prime_UTRContig_72 415916..416085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13450CDS_13450Tribonema minus UTEX_B_3156 CDSContig_72 416086..416328 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13450UTR3_13450Tribonema minus UTEX_B_3156 three_prime_UTRContig_72 422227..422578 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13450 ID=mRNA_13450|Name=jgi.p|Trimin1|350793|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1638bp|location=Sequence derived from alignment at Contig_72:415916..422578+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGCAACAGCAGCATTCGAAAGGCTGTCATTGGCATAGACCGGGAGC
TCCACGCGCGATAAATAATTTCCACACAGAGTTGAAGTACAGTTCCCTGA
GGACCTCTCTTCGTTTGGCTCGAGCGAGAAAGAGAAAGAGCGGGATAGAG
ACACGCAGCCAACAGCTATCATGAATATACCACCAAAATGCAAGCCCATG
GTGCCCTTCGTGCGGAGAGCGGAGGAGCTCGACAGGGACGACAGTGGACT
GGAGACGAAGGTCGTCGCCTACTATTGCAGATTGCACGCTGCGGAGGTCG
GGCTGGGCTTGCCGGACAAAGGACCGGAGGAGGAGCAGTGCATCATGGCC
TTAGTCATGAGGCTGGAAGACGACAAGAAGGTCTTGCCGCAGGAAGCCTT
GGACAATGCTCAGCAAACGTGCAGGCAGTTCGCACTGGACGTGTTTCAGC
GCGCAGACGACGAGGACAGAGCGGGACTTGCGGACAACAGCACCGCGAAG
GCGTTCCACGCCGCGGGCGTGTTCTTTGACATCCTGGCGCAGTTCCGGAA
GGTTCCGCTGGACGAGGAGTGCCTTGTAAAAAAGAAGTACGCCAAGGCCA
AGGCTATGGACATCCTGAAGGCATTGAGATCGGGGCGCACACCAACGCCA
GGACCTGTTGGGCAGGCGGCCGACCAGGGCTCCACCGGCTCCGCGCCGCC
GAACCTCTTGGGCGGCAGCGAAGCGAGTGCCCCTCCCGCCTTTGCAGCGG
CAGGTGCGGCGCTGGCCGACTCCGTCAACTACAACATTGCCGACCAGAGC
TCCACCGGCTCCGCGCCCCCGAGCCTCATGGGCAGCAGCGAAGCGAGCGC
CCCCCCCGGCTTTGCAGCCGCAGGCGGCGCGGCGCTGGCCGACTCCGCCC
CCGCAGCGCCCCCCCAGACGTCGTTTTACGGTGAAACTGTGGACACGGGG
TCAGGCGCCATGTCGTCGTACCCAGCGAGCGCCAGCATCAGCGCCGAGCA
GAACGAGGGTAAGCAGCAGCAGCCGTCGCCGTATGTGGACATGGCCGCGG
CGCAGCCCAGCCCGCAGCCGCAGAGACACGTGGCACCCACCGCACCGTCG
CCTGCATATAGCGCCAGCGGCAGCACCAACGCCGGCAGCAGGAGCGGGGG
CAGCGCGGCTGCGGTAAAAGCCAACGCCATTGCCGATGCAACAGAGTACG
CCAAGTTTGCAATCGCCGCGCTCGAGCACAAGGACATGAACCTGGCGCGG
CAACGCCTGCAAGCGGCCCTGGACTGCTTGAGATGATGACGCTATGGGCG
GTTGCAAGAGCGCTACGGGCGCAGGGTTTTGCGCGCGCTGTCAACTTCAA
CTTAAGGCGTGCTTGCGGAGCCTTCAGCAGTGCTCAGCAATGCTCCGCAG
GCTCATTCTGCGCAGCGCACGCAGCGCGTGTGAGGATGGGATGCATGTCG
CTAGAGCGGCAGCATGCATGTGTAGTTGGCAGCACTACACAGGGCCCAGT
GCGCAACGGCATGTATATCCGCTGTGCAGCAGTGTCATTGGGTCGCACGC
ACAGGTGGTGGGTGCGTGTTGATTTCAGCAGGGTGTGTGACAGCGTGTTG
TGCGTTTTTCCTAAATAATGAGTCACCTAAATCCCCCC
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protein sequence of jgi.p|Trimin1|350793

>Trimin1|350793|estExt_Genemark1.C_Ctg_720037 ID=Trimin1|350793|estExt_Genemark1.C_Ctg_720037|Name=jgi.p|Trimin1|350793|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=372bp
MNIPPKCKPMVPFVRRAEELDRDDSGLETKVVAYYCRLHAAEVGLGLPDK
GPEEEQCIMALVMRLEDDKKVLPQEALDNAQQTCRQFALDVFQRADDEDR
AGLADNSTAKAFHAAGVFFDILAQFRKVPLDEECLVKKKYAKAKAMDILK
ALRSGRTPTPGPVGQAADQGSTGSAPPNLLGGSEASAPPAFAAAGAALAD
SVNYNIADQSSTGSAPPSLMGSSEASAPPGFAAAGGAALADSAPAAPPQT
SFYGETVDTGSGAMSSYPASASISAEQNEGKQQQPSPYVDMAAAQPSPQP
QRHVAPTAPSPAYSASGSTNAGSRSGGSAAAVKANAIADATEYAKFAIAA
LEHKDMNLARQRLQAALDCLR*
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mRNA from alignment at Contig_72:415916..422578+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13450 ID=mRNA_13450|Name=jgi.p|Trimin1|350793|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6663bp|location=Sequence derived from alignment at Contig_72:415916..422578+ (Tribonema minus UTEX_B_3156 )
CAGCAGCAACAGCAGCATTCGAAAGGCTGTCATTGGCATAGACCGGGAGC
TCCACGCGCGATAAATAATTTCCACACAGAGTTGAAGTACAGTTCCCTGA
GGACCTCTCTTCGTTTGGCTCGAGCGAGAAAGAGAAAGAGCGGGATAGAG
ACACGCAGCCAACAGCTATCATGAATATACCACCAAAATGCAAGCCCATG
GTGCCCTTCGTGCGGAGAGCGGAGGAGCTCGACAGGGACGACAGTGGACT
GGAGACGAAGGTCGTCGCCTACTATTGCAGATTGCACGCTGCGGAGGTCG
GGCTGGGCTTGCCGGACAAAGGACCGGAGGAGGAGCAGTGCATCATGGCC
TTAGTCATGAGGCTGGAAGACGACAAGAAGGTCTTGCCGCAGGAAGCCTT
GGACAATGCTCAGGTACGGGCCGTTGGTAGTGACACCTCCCGGCAGATTG
AACGCTCACAACAAAAGCCAATAACGAAACCAGCAGTGTAACTTCCTGGT
GCTGATGTCGCGTTGGATCTATTATCTCTCTCTAGGGCTCCTTGCTGCCC
GCCTGCTCAAAAACAGTTATGTCGATGGAGCTTTTGGTGTGAGGCGTTAC
TGCTTACGTGAAACACCTTTTGGTCACACTTCATTCGAGCATGCAAGTTT
GCAGCAACAATGGAAGCTGCAATCAATGATCACACTAGGATGTATGCCTC
ATCTGGTTTGGAATCTGCAAAGCAGGTCACCAAAAAAACAAATATATATA
TGTCAACTTGCAGGAACAAATTGGGGCAGGCTGGCTGTGCCTTCTCAGCT
GCATCATGATTTATTGCAGATCATGAAACGTACAATGATGGCAAGACTCA
CGGCAACTGCCAATCATCGATTGCTGCTGTATTTGTAGCCTTGGGTCAGC
GCTTGACATGTCAAGATAGTGTGGAAGCAGGGGCATGCCTCGATCGAAAT
TAATTTTTCCCACCGTTAAACAAACTTGCGTCATGGCAGCAGCGCGTTGC
GTGCGCAATGGAACGCCTTACCGTGACACTGCGGGCTGCGGTCAAAGCCC
CCGCCCGTCATGAGGACAGAAGGTTACAGTACGAAAAGTATCTCCCCCAT
GCTGTATGAACGTGCCAGCACGCATGATACCGCTCAGATCCGTGTAGTCT
GTGCTGGTGATGGAGCTTCCGTTTTGCGGCCCACTGTGAGGGCAGGGAGC
ACAGTCAACTGTGCGCTGAGCAAGCAGTGAAAGAGCAAAACTGCGCCACA
ACTGCAGTCTTGCTGGGTAGAAGTGTATGTGGTGCTGTTTTCTCGAGCAC
TGTCCGGTTGGCAGGTATGCACATCACAGGCTTGTAGTTGGACAAGCCGA
CACCATTGCGGTGATTCATGGTGCTGAATCGAGTCATCCCACTTTGAACT
TGTGGTCGCAAAGTACATCAGGGAGCGCGTGAAGCACGCGCATTGGCCAA
CGCGCCTTCACTTGATGTCTGACTTCGTGCATCAGAACCACTCCCACTAC
GGCCACAGCCTCAGATAGTCTTTGACACAAGTTTGAACACGGCCTTGCAC
ACAGTCACTCCAACTCTTAAGAATCAAAACTACACACGCCAGAGACAGCA
CCAATTAGGTAGATGATGCCTCCATCCCATATCAGCCCTGATGTGAGCTG
TGTGCCCACCACTCAAAACTAAGATTGCTGCACTATAACTTGCTTCGTTG
CCCAGAGCTGACATTGCCACCTATACGTGCCGTTGAGCTTTCAAGTGGTG
TGCAGGCTGATGACTGCAGTCGATTGTCGCTTAGCAGGGTTGGCAGGCCA
CTCTGCTGAAACCTTGGTTTTGTTGTGCCGACGCCACCAAGAAGTCTTTT
TGTTTTGCTGACGCCACTAACAAAACCAACGTTGTGTTCGTCTAGTGGAA
TTGTCAACTTCAACTTGATTTGTGTCGGACAAGTGTGCAGGCGCTGCATG
ACCTGCTTCTGCCCCCCTCCCTGTCACCGTGCGTCAATTATCGTGGTGCA
GGCACTTTGCGCTGGACGTGTTCTAGCGCGTGGACAACGATGACAGGGCA
GCGACATCAGCAATTATGTAGAGCTACCTACCTGCCACTGATCATTTCTC
ACTGTGCTCCGCGGTTGTCAGCGCGTGCCAGCTGACGCCATGGTTGCGGT
GCATGGTGGTGGCGCCAGCAGCAGTCTGCGTGACATCATCAACGACATAT
ATGATGACGTCACCTACGACACATACATACCTGCCTGCCGCTGATGTATA
CCTACCCTTGTCGTACCTGCCCAAAGCAATTATGCAGGCAGTTTGCCCTG
GATGTGTTCCAGCGCACGGACGATGACATCATCATCAACGATGTAAACCT
ACATACCTGCTGCTGATGTATACCTACCCTTGTCATAACCGCCCGCAGTC
GACGTGCAGGCAGTTCGCACTGGAAGTGTTCCAGCGAATCAATGACATAA
TTAATCATGTATACCTACTTACCTGCTGCTGATGCCTACCCTGTTGTAAC
CGCCCACAGCAAACGTGCAGGCAGTTCGCACTGGACGTGTTTCAGCGCGC
AGACGACGAGGACAGAGCGGGACTTGCGGACAACAGCACCGCGAAGGCGT
TCCACGCCGCGGGCGTGTTCTTTGACATCCTGGCGCAGTTCCGGAAGGTT
CCGCTGGACGAGGAGTGCCTTGTAAAAAAGAAGTACGCCAAGGCCAAGGT
GCGCAAATGTGTTTCTGGACCGAAATTGGGCGTCCCTCTTCAAGAAGGTG
TATGCCAAGGCTGAGGCGTATGTGTGTGCTAGTTTGCGGCGGAGTTCTCT
TTTCTCGCTGTTGCACTTTCTGAAGCTGCAACAAATTTCTGAAGCTGCAA
CAACGCTGTTTGTACCCGGGCTTTGCTGAATTTGCTAAAGTTCAATGGAC
TTATGCAACAGGCAGCATTTGCATCATTCGGTAAGTATGCTGATGCCAAG
TATACACAAAGTACTTGCTTGAAGTACCTATCACGAATGGGTCTGCTGAC
GCTAAAAACTGTAGCGCATAAATGCTGGGTGTTGTCAATGACACACACAC
ACCGCTGCAAACAACACCAGCAACAACCGCTCGTGTTGAGTCGATGTTTC
TGTACTTTGAGTTGAGAAGTACGCACACACTGTAGTTGTTGACATGGGCA
GTCTCATTACACCGACATTCGTTTCTCAGGAGCACATGCCGCACTAAAGC
AGCGCCACTTCTGACCAAGCTGCACCTGCTTGCACTTGCCCCTGACACCT
GCAGGCTATGGACATCCTGAAGGCATTGAGATCGGGGCGCACACCAACGC
CAGGACCTGTTGGGCAGGCGGTCAGTAAATGCACTTGAAGTCTACAGTAG
TTAGGTTTGATTCCAGAGAGTGCCGAGAGGACTGGTGGAGGACTGACTGG
ACGGCCAGTGAGCACCCACACGTGGAGGCTGGAGTTGAAGTAGGAGTTGG
GCGGTTGCTTCAACGGTGACGTGTCTGTAAGCTTTGCTTTGCCATGTGCT
TTACGGGCAGCACTGGCCATGCTGTGAATTAGCACGATCTTGTCGTTGAC
ACGCCTCGAATTCGAGCCTGCGTTGCATCGTTTTGGCGATAGATCAACCC
TGACCTCAATTCAGCTATGAGGACCGTATCAACCGACGTAATGCATGCCA
ACAAGGTGACTGCAGAAGTGCGCCTCTCCTGTTTGCTCGGCGGGCACAAC
CATTGTTGCTCGACCAGCGCTAGCGCGGCTGCTCTGTCTTCATCTTCAAG
TGCATCACCTTTCAGACCCAATGTGCACTTTTCTTGATGTTGAATTTGAA
TCACATGCCATTTTGGAAAGTAGGATCAGAGCAGGGACGGTGCTTCTTGC
GTCACGCAGTCAGCACCGTGTTCCTGCACCCTGTCTCTGCCGGCACAACC
AGCGCGCCGAAGTGCCACATGCTGCTCACACTCCTCTCTCTTTTGCGCCA
GCCTTCGCTCCAATCTCCCCAGCTCTCACCTCCATCTAAACTTGAACATT
CAAAACATCAACTTCAACTTCAACATTGCCAATGACGCGCGTTTCAGGCC
GACCAGGGCTCCACCGGCTCCGCGCCGCCGAACCTCTTGGGCGGCAGCGA
AGCGAGTGCCCCTCCCGCCTTTGCAGCGGCAGGTGCGGCGCTGGCCGACT
CCGTCAACTACAACATTGTAAATAAATGACAAACTTCAACTTTGAAACCC
TCAACCTTCAACTTCAACATTGCTCATGACGCGCGCAGGCCGACCAGAGC
TCCACCGGCTCCGCGCCCCCGAGCCTCATGGGCAGCAGCGAAGCGAGCGC
CCCCCCCGGCTTTGCAGCCGCAGGCGGCGCGGCGCTGGCCGACTCCGCCC
CCGCAGCGCCCCCCCAGACGTCGTTTTACGGTGAAACTGTGGACACGGGG
TCAGGCGCCATGTCGTCGTACCCAGCGAGCGCCAGCATCAGCGCCGAGCA
GAACGAGGGTAAGCAGCAGCAGCCGTCGCCGTATGTGGACATGGCCGCGG
CGCAGCCCAGCCCGCAGCCGCAGAGACACGGTGAGAGCATAGTATGGTAG
TTTTGTGTTTGAAAACGAATCGAAAGATCGTAGAGCTCTAGGCGACAAGG
GGTGGTCAGCCGGAAGTGCGCTCCACCACTAACCGTGGTCATTGATTATA
CTCCGGAGTTGTGTGCTTTGAAGCATGCACATGCACATGGTGCACAGATT
CGTGTCACACCTTCAAGTACGTCCAATGATGTCATGTGTTCATTGCGCAC
ACCCTTTGGTTCTGAGGCAGCACACGGCAATCGTCATTCAAGATTTACAC
TTCAACGTATCTGGCCGCAGCAAGGGCGCATGCCACGTTTGCATGGTTCG
CTCCCTGCCACCACCATGCCCATACAGCACACACAATCCTGCACACATGA
CCATTGATGGCTAGGGCAAATGTGTAATGCGAACGTATCTGCTGCGCATG
CCCTGTTTTGCCGGTCGTGACTGGTGCGTCGTGGTGCCGAGACGCTGTTA
TGTTTCCTATTCAGTGCTGATGCTGTAGCTTACTTCCTGGAACCAACACC
CAATATCTCTTCCACTACAGGTGACGAATTGTCGCTATGCGATGAAAGAT
CACACATCACTTGAACCTGTGCATGCTGTCATTGAACTTCAAACCTCACT
TGAACTCTGCATGCTCCTTGAACTTCAACTTGCAGTGGCACCCACCGCAC
CGTCGCCTGCATATAGCGCCAGCGGCAGCACCAACGCCGGCAGCAGGAGC
GGGGGCAGCGCGGCTGCGGTAAAAGCCAACGCCATTGCCGATGCAACAGA
GTACGCCAAGTGAGTGGTCATGTAGCTGTCGCCGCTCCAGCAAGTCTTTC
TGCCGATTGTAATGATGCACATGCGCGTGGGCCCTTCATTTTTGGCGAGC
GTGTTGGATGATGTTTGTCGTTTCAGACCTTAGCAGCTGCTCACACCTCA
ACAACTGCCGCAACGTTTGACATTTTATATTGACTTGCCTGCAGCAACAA
GCACCCCGTGCATTGCCTATTGGCTTTTGGTGTTGCGGTCATGCAGCGCC
ATTGTGTTGGCATTGCCTATTGGCTTTTGGTGTTGTAGTCATGCAGCGCC
ATTGTGTTGATGTTGCGTCCAAGCATTTTGACACCGAGCGTGAAGGTATC
GGGAGCGTTGTGGTAGAGTGAAAGGCGCAAGCTAGCCTCACGTGCAGCGC
CAGCGTGATGACTGTGAGAAGCGCGCATTTAGCATCAACATCGTTAGCGC
CGTGCTCCTCATGTGTGCCTGCGGAGGGGTGATGGGACATCAATCTGCCC
CAAGTCCTTTGTGTTTCCGGTTTCAAACTTCAGTATCCTGCTTGTCCTCT
GTTACAAAGGCTACTTGCGTCATACTGCAGCTTTGAGTGCTTCAGCCAAA
CTCGTCGCCTCAGCAACAGTATGCGCCATGACGTGCTGTGAGACCATGTG
CTCATTTGGTTTGACGCTCGTTGTCACCGGAATTCTGTGTGTGCCTGCTA
CACGCATTGGACCCTCAACACTTCCAGGGCTCTAATTTATCCCTCACACG
CACACGTTTGCGCTAAGTCTGCTGTGATGATGTCAGGGAACATGCGTTCC
CAGGCTCACTCAATATTCCTGTAAACCTGGTTGGCTTAACCTCCAAGCTT
TGCACCATGCGCTCCCTCACTACGCTGGCCTTGACGGTTTTCACAATATC
TTTCGACTTGCACCACGCGTTGCATGCAGGTTTGCAATCGCCGCGCTCGA
GCACAAGGACATGAACCTGGCGCGGCAACGCCTGCAAGCGGCCCTGGACT
GCTTGAGATGATGACGCTATGGGCGGTTGCAAGAGCGCTACGGGCGCAGG
GTTTTGCGCGCGCTGTCAACTTCAACTTAAGGCGTGCTTGCGGAGCCTTC
AGCAGTGCTCAGCAATGCTCCGCAGGCTCATTCTGCGCAGCGCACGCAGC
GCGTGTGAGGATGGGATGCATGTCGCTAGAGCGGCAGCATGCATGTGTAG
TTGGCAGCACTACACAGGGCCCAGTGCGCAACGGCATGTATATCCGCTGT
GCAGCAGTGTCATTGGGTCGCACGCACAGGTGGTGGGTGCGTGTTGATTT
CAGCAGGGTGTGTGACAGCGTGTTGTGCGTTTTTCCTAAATAATGAGTCA
CCTAAATCCCCCC
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Coding sequence (CDS) from alignment at Contig_72:415916..422578+

>mRNA_13450 ID=mRNA_13450|Name=jgi.p|Trimin1|350793|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1116bp|location=Sequence derived from alignment at Contig_72:415916..422578+ (Tribonema minus UTEX_B_3156 )
ATGAATATACCACCAAAATGCAAGCCCATGGTGCCCTTCGTGCGGAGAGC
GGAGGAGCTCGACAGGGACGACAGTGGACTGGAGACGAAGGTCGTCGCCT
ACTATTGCAGATTGCACGCTGCGGAGGTCGGGCTGGGCTTGCCGGACAAA
GGACCGGAGGAGGAGCAGTGCATCATGGCCTTAGTCATGAGGCTGGAAGA
CGACAAGAAGGTCTTGCCGCAGGAAGCCTTGGACAATGCTCAGCAAACGT
GCAGGCAGTTCGCACTGGACGTGTTTCAGCGCGCAGACGACGAGGACAGA
GCGGGACTTGCGGACAACAGCACCGCGAAGGCGTTCCACGCCGCGGGCGT
GTTCTTTGACATCCTGGCGCAGTTCCGGAAGGTTCCGCTGGACGAGGAGT
GCCTTGTAAAAAAGAAGTACGCCAAGGCCAAGGCTATGGACATCCTGAAG
GCATTGAGATCGGGGCGCACACCAACGCCAGGACCTGTTGGGCAGGCGGC
CGACCAGGGCTCCACCGGCTCCGCGCCGCCGAACCTCTTGGGCGGCAGCG
AAGCGAGTGCCCCTCCCGCCTTTGCAGCGGCAGGTGCGGCGCTGGCCGAC
TCCGTCAACTACAACATTGCCGACCAGAGCTCCACCGGCTCCGCGCCCCC
GAGCCTCATGGGCAGCAGCGAAGCGAGCGCCCCCCCCGGCTTTGCAGCCG
CAGGCGGCGCGGCGCTGGCCGACTCCGCCCCCGCAGCGCCCCCCCAGACG
TCGTTTTACGGTGAAACTGTGGACACGGGGTCAGGCGCCATGTCGTCGTA
CCCAGCGAGCGCCAGCATCAGCGCCGAGCAGAACGAGGGTAAGCAGCAGC
AGCCGTCGCCGTATGTGGACATGGCCGCGGCGCAGCCCAGCCCGCAGCCG
CAGAGACACGTGGCACCCACCGCACCGTCGCCTGCATATAGCGCCAGCGG
CAGCACCAACGCCGGCAGCAGGAGCGGGGGCAGCGCGGCTGCGGTAAAAG
CCAACGCCATTGCCGATGCAACAGAGTACGCCAAGTTTGCAATCGCCGCG
CTCGAGCACAAGGACATGAACCTGGCGCGGCAACGCCTGCAAGCGGCCCT
GGACTGCTTGAGATGA
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