mRNA_13446 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|87896
Unique Name	mRNA_13446
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A835YNQ0_9STRA (CDGSH iron sulfur domain-containing protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNQ0_9STRA)

HSP 1 Score: 221 bits (563), Expect = 5.260e-72
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 3

Query:   60 MVELVLTENVLKIIVAVLSMAVAILLHLRRSASTSGNRCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 386
            MVELVLTENVLKIIVAVLSMAVAILLHLRRSASTSGNRCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK
Sbjct:    1 MVELVLTENVLKIIVAVLSMAVAILLHLRRSASTSGNRCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 109

[Close]

BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: J3JTG0_DENPD (CDGSH iron-sulfur domain-containing protein 2 homolog n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=J3JTG0_DENPD)

HSP 1 Score: 100 bits (250), Expect = 3.250e-24
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 3

Query:  147 RSASTSGNRCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAK 380
            ++      RCN++IQL NPKVVD +   +I +         AVFCRCWKSKN+PYCDGSHA HN+ETGDN+GP+I+ K
Sbjct:   60 KARKCGSGRCNNAIQLTNPKVVDTIDVEDITD--------KAVFCRCWKSKNWPYCDGSHAAHNKETGDNLGPVIVKK 129

[Close]

BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A183CTC9_GLOPA (ZnF_CDGSH domain-containing protein n=1 Tax=Globodera pallida TaxID=36090 RepID=A0A183CTC9_GLOPA)

HSP 1 Score: 96.7 bits (239), Expect = 3.420e-23
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 3

Query:  147 RSASTSGNRCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 386
            RSA+T   RCN  +QLD  KVVD +   E+E++   K      FCRCW+SK FPYCDG+H  HN+ETGDNVGPLII K K
Sbjct:    4 RSAATKLARCNKRVQLDKDKVVDTL---ELEDIGQMK-----AFCRCWQSKKFPYCDGTHNAHNKETGDNVGPLIIQKAK 75

[Close]

BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A6J2Y349_SITOR (CDGSH iron-sulfur domain-containing protein 2 homolog n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2Y349_SITOR)

HSP 1 Score: 97.8 bits (242), Expect = 5.180e-23
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 3

Query:  171 RCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 386
            R N  +QL NPKVVD +   +I E         A FCRCWKSKN+PYCDGSHA HN+ETGDN+GP+I+ K+K
Sbjct:   68 RTNKIVQLSNPKVVDTIDVEDISE--------KAAFCRCWKSKNWPYCDGSHANHNKETGDNIGPVIVKKNK 131

[Close]

BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A834M2Q6_RHYFE (CDGSH iron-sulfur domain-containing protein 2 homolog n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834M2Q6_RHYFE)

HSP 1 Score: 97.8 bits (242), Expect = 5.180e-23
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 3

Query:  156 STSGNRCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 386
            S SG + N  IQL NPKVVD +   +I        +G A FCRCWKSKN+PYCDGSHA HN+ETGDNVGP+I+ K K
Sbjct:   64 SCSG-KLNQVIQLSNPKVVDTIDVEDI--------SGKAAFCRCWKSKNWPYCDGSHAAHNKETGDNVGPVIVKKAK 131

[Close]

BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A662YE53_9STRA (ZnF_CDGSH domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YE53_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.120e-22
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 3

Query:  171 RCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAK 380
            R N  IQL+  KVVD V   E+E+L S  KNG    CRCWKSK FP+CDGSH  HN+ETGDNVGPL++ K
Sbjct:   67 RLNRQIQLEKEKVVDFVSVPEVEDLLS--KNGKCTVCRCWKSKKFPFCDGSHQKHNKETGDNVGPLVLQK 134

[Close]

BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A482T5K1_9ARCH (CDGSH iron-sulfur domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T5K1_9ARCH)

HSP 1 Score: 97.4 bits (241), Expect = 1.360e-22
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 3

Query:  171 RCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAK 380
            R N+ ++LD+PKVVD V   ++E++   K +G  + CRCWKS+ FPYCDGSH  HN+ETGDNVGPLII K
Sbjct:   86 RINNKVKLDSPKVVDMVKCADMEDMAQYK-DGKLIMCRCWKSETFPYCDGSHVRHNKETGDNVGPLIIQK 154

[Close]

BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A1W4WPU7_AGRPL (CDGSH iron-sulfur domain-containing protein 2 homolog n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4WPU7_AGRPL)

HSP 1 Score: 95.5 bits (236), Expect = 4.010e-22
Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = 3

Query:  171 RCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAK 380
            R NH I   NPKVVD V   +I +         AVFCRCWKSKN+PYCDGSH +HN+ETGDNVGPL++ K
Sbjct:   67 RVNHIIHRSNPKVVDTVDVEDITD--------KAVFCRCWKSKNWPYCDGSHGSHNKETGDNVGPLVVKK 128

[Close]

BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A2H2IJT2_CAEJA (ZnF_CDGSH domain-containing protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2IJT2_CAEJA)

HSP 1 Score: 94.4 bits (233), Expect = 5.350e-22
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 3

Query:  171 RCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 386
            RCN+ I+LD+ KV D V   +I E    KK    V+CRCWKSKN+PYCDGSH  HN+ETGDNVGPLI+  +K
Sbjct:   39 RCNNLIKLDSKKVADTVDIEDIGE----KK----VYCRCWKSKNWPYCDGSHGAHNKETGDNVGPLIVKSEK 102

[Close]

BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A024GE78_9STRA (ZnF_CDGSH domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GE78_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.540e-22
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 3

Query:  171 RCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 386
            R N SI+L + KVVD +  T++E+L   K +G  V CRCWKSK FPYCDGSH  HN+ TGDNVGPLII   K
Sbjct:   71 RINGSIKLSSAKVVDTLKITDVEDL-CAKGDGKCVMCRCWKSKTFPYCDGSHTKHNKATGDNVGPLIIQSGK 141

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|87896 vs. uniprot

BLAST of jgi.p|Trimin1|87896 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YNQ0_9STRA	5.260e-72	100.00	CDGSH iron sulfur domain-containing protein 1 n=1 ...	[more]
J3JTG0_DENPD	3.250e-24	55.13	CDGSH iron-sulfur domain-containing protein 2 homo...	[more]
A0A183CTC9_GLOPA	3.420e-23	57.50	ZnF_CDGSH domain-containing protein n=1 Tax=Globod...	[more]
A0A6J2Y349_SITOR	5.180e-23	58.33	CDGSH iron-sulfur domain-containing protein 2 homo...	[more]
A0A834M2Q6_RHYFE	5.180e-23	59.74	CDGSH iron-sulfur domain-containing protein 2 homo...	[more]
A0A662YE53_9STRA	1.120e-22	61.43	ZnF_CDGSH domain-containing protein n=2 Tax=Nothop...	[more]
A0A482T5K1_9ARCH	1.360e-22	58.57	CDGSH iron-sulfur domain-containing protein n=1 Ta...	[more]
A0A1W4WPU7_AGRPL	4.010e-22	60.00	CDGSH iron-sulfur domain-containing protein 2 homo...	[more]
A0A2H2IJT2_CAEJA	5.350e-22	59.72	ZnF_CDGSH domain-containing protein n=1 Tax=Caenor...	[more]
A0A024GE78_9STRA	5.540e-22	59.72	ZnF_CDGSH domain-containing protein n=2 Tax=Albugo...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_72	contig	Contig_72:393406..395917 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|87896\|CE87895_63
Description	Zinc finger CDGSH domain-containing protein 1. Source PGD
COG category	S
Max annot lvl	121069\|Pythiales
EggNOG OGs	KOG3461@1\|root,KOG3461@2759\|Eukaryota,1MGTZ@121069\|Pythiales
Evalue	1.13e-24
Seed ortholog	115417.EPrPW00000024968
Hectar predicted targeting category	signal peptide
TranscriptId	88218
Track	FilteredModels1
ProteinId	87896

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|87896	gene_13446	Tribonema minus UTEX_B_3156	gene	Contig_72 393406..395917 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|87896	Trimin1\|87896\|CE87895_63	Tribonema minus UTEX_B_3156	polypeptide	Contig_72 393717..395777 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13446_1	exon_13446_1	Tribonema minus UTEX_B_3156	exon	Contig_72 393406..393441 +
exon_13446_2	exon_13446_2	Tribonema minus UTEX_B_3156	exon	Contig_72 393694..393863 +
exon_13446_3	exon_13446_3	Tribonema minus UTEX_B_3156	exon	Contig_72 394270..394365 +
exon_13446_4	exon_13446_4	Tribonema minus UTEX_B_3156	exon	Contig_72 395691..395917 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_13446	UTR5_13446	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_72 393406..393441 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13446	CDS_13446	Tribonema minus UTEX_B_3156	CDS	Contig_72 393717..393863 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_13446	UTR3_13446	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_72 395778..395917 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_72:393406..395917+
coding sequence from alignment at Contig_72:393406..395917+

spliced messenger RNA

>mRNA_13446 ID=mRNA_13446|Name=jgi.p|Trimin1|87896|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=529bp|location=Sequence derived from alignment at Contig_72:393406..395917+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCCAAGCTTGTGAGGAGCGATCGACCCAGAGCCAGCAAGACAACAGGCA
GCAGTGATCATGGTGGAGCTAGTCCTCACGGAGAATGTACTGAAGATCAT
TGTGGCGGTGCTGTCCATGGCGGTGGCCATCCTGCTGCACCTGCGCAGAT
CTGCTTCCACCTCCGGCAACAGATGCAACCACAGCATACAGTTGGACAAC
CCAAAGGTTGTGGACAAGGTCGGATTTACGGAGATTGAGGAGCTGCCGTC
CTGCAAGAAGAACGGCACGGCTGTGTTTTGCCGATGCTGGAAGTCAAAGA
ATTTCCCATACTGCGATGGCTCGCACGCCACGCACAACCGCGAAACCGGC
GACAACGTTGGTCCCCTCATCATTGCGAAGGACAAGTAGCTGCGTACCAT
GCGTACTACTCCCAGAACGTTTGGTTCGCTTAGCCATGGCCTGGACCTGA
AGTTGACATCGCCCCTGGTGGGCACGTGGAATGATGGTGGAGGCCACTCT
GTGCAGCGCGCGATACGCCCCCTATCCCT

protein sequence of jgi.p|Trimin1|87896

>Trimin1|87896|CE87895_63 ID=Trimin1|87896|CE87895_63|Name=jgi.p|Trimin1|87896|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp
MVELVLTENVLKIIVAVLSMAVAILLHLRRSASTSGNRCNHSIQLDNPKV
VDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNV
GPLIIAKDK*

mRNA from alignment at Contig_72:393406..395917+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13446 ID=mRNA_13446|Name=jgi.p|Trimin1|87896|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2512bp|location=Sequence derived from alignment at Contig_72:393406..395917+ (Tribonema minus UTEX_B_3156 )
TTCCAAGCTTGTGAGGAGCGATCGACCCAGAGCCAGGTGCGCACAACAGT
ATCATTTGTCGCGTTGACACCAGTCTGAAAGGAAGGAAACCATGGATCCG
GATACGCACTTCAGGATCTGATGTCCATTTGCAGGGGAATGCTCAATCCG
CGAGATCCATAGTACGCTTGAGTCTAACACGCTTGACAGTTGTCAATCAT
TCACGAACTCTTGCTGTTCATCATTCTCATTTGCACTCGTCTTTCCATCG
CCAACTTTGTAAACTTTGCTTTTGCGTGTTGCCAGCAGCAAGACAACAGG
CAGCAGTGATCATGGTGGAGCTAGTCCTCACGGAGAATGTACTGAAGATC
ATTGTGGCGGTGCTGTCCATGGCGGTGGCCATCCTGCTGCACCTGCGCAG
ATCTGCTTCCACCTCCGGCAACAGATGCAACCACAGCATACAGTTGGACA
ACCCAAAGGTAACAGCAAGTGTCATACACGTGTGAGACATGTTGCTAGAG
CCATGGGTCGAAACCCACTTTACTGAGCATGCCAAATAGTCATGTTGCTA
TGCGCAGGAGCAGGCATTAAAAGAGCACAACAGGCGCTTTAATTCGTGCA
TGCAGATCTGTTGCATTTATCATGATAGTCAGCACAGCACTGCCTCCTGC
TACTGAATTGCACCTGACTAATATGGTGATGAACGTGAGGTCAGATGCAC
GCTCTGCACGCGACAGCACCCTCCAACAGCACCACCCCATCAGTGCCTTT
GTACAGCTTGCTGTGTCGCTCCCCGACCTTCGCACGCAAAAGAGATGGCT
GAGCCTGGCAACGTACTGTGCCGACTCACTCTTGCGCAAATGCACTCCTG
TTGCATCATTGCAGGTTGTGGACAAGGTCGGATTTACGGAGATTGAGGAG
CTGCCGTCCTGCAAGAAGAACGGCACGGCTGTGTTTTGCCGATGCTGGAA
GTCAAAGAATGTGAGTCCTACCCCCCCTGATGCCAATCACCCACGCATAG
CTACTGTATACCCCCCCCCCCCCCCCCCGTTTAGTCGCGCTGCGAGGCGC
ATGTTGGAACAACGGGGGGTCTTATACAATGTACCCCCCGTCTTGCACGC
GCGTGGGTGGCTGCGGTCGCATATATAGCATGATGAATACTGCAGCACTT
CTGCTGCTGCAAGCAGCAGGCAACAAATGTACGTTCTGCAGCTTCTGCCC
AAGCACGCCTGGCTTGAACACCTCCTTAGCACTACAACGGTGTACGGCTG
CAGAGGGCGTTTGCAGCAACGCAGCACTGCAGTCTACTTTTTCTTCGCAA
CGAATTTTTGTTGAAGTACGCGCAACTGCCTTCCTTCTTCTACAACCCCT
GGTCTTATATGACACGTGCCTACCCCGATGCAATGTCTTGCATGCACGCC
CACACCTCACAGAGGGGGCACGGTGGGTCTTGTACCACGGCATAAAATGA
TGAGTTCTTGTACGAGACGGGGGTTTACCCCGTCGTCTACGGTAGCACCC
TGGACTAATATGCTAACTGCCAAAGCATAGCTACATGCAGCTAAGTGCTC
GACCTGTGACAATGGCTCCTATGGTCATGCTTAGAAATCTTTCTCGGCGC
ATGTACCAGCTGTCACAGTTAGTTCCTAGTGCCGTGCTGCGCTCTGTAAT
GTAGTTGCGGTACTGCCATCCACCCCAATGTATACATGACATACGCAGGG
CCTTGAAATTGCAGGTTTTGCCACTCTTGCAGCGGATTTCTATGCGTCCA
CCCCTTGTAGTTTGCTCCGCAAAAGGACGTCCATCCCCCGTTTTTATGCG
TAACAAAGATGCCGTCCAGTGTCTTAACTATGAACAAGACAGCACATGTG
TTTCGTTGCCAGATTCCACTCATTGAGGGTGGCAGTGTTGGTCAAAGTGA
CATCATGGCCACGATACTTGGAGGGCATTCATGTTGCCTCTGACTTCTTG
TGCTGGAGGGTGTGTACTGCAGTGGCAGCAGTGCCATAAGCCACCTCTGT
GGCTGTGTGCTTGCTGCGCACAACTCACAATGACCTGAGACTTGCCCATG
GTCTCAATGTCTCCAGTTTTCAACTTGTCAACCTGGTATTGAAGGGCAGC
CCGGCAATATTGCAACTGGAATCGTACTGCAGTGTCATCAGGATGCTTGC
TAGGATGCTCCTGGGAATTTTTGTCAAGGCTTTCATCAGCTTTTCTGTGA
AGTTGGACTTTGGAATGTATGCGTTGCATACTGAGCTGTGCTGAGCTACC
ACTGCCCTTCGCCCTGCTGCTCGCTACTGCTGCAGTTCCCATACTGCGAT
GGCTCGCACGCCACGCACAACCGCGAAACCGGCGACAACGTTGGTCCCCT
CATCATTGCGAAGGACAAGTAGCTGCGTACCATGCGTACTACTCCCAGAA
CGTTTGGTTCGCTTAGCCATGGCCTGGACCTGAAGTTGACATCGCCCCTG
GTGGGCACGTGGAATGATGGTGGAGGCCACTCTGTGCAGCGCGCGATACG
CCCCCTATCCCT

Coding sequence (CDS) from alignment at Contig_72:393406..395917+

>mRNA_13446 ID=mRNA_13446|Name=jgi.p|Trimin1|87896|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=330bp|location=Sequence derived from alignment at Contig_72:393406..395917+ (Tribonema minus UTEX_B_3156 )
ATGGTGGAGCTAGTCCTCACGGAGAATGTACTGAAGATCATTGTGGCGGT
GCTGTCCATGGCGGTGGCCATCCTGCTGCACCTGCGCAGATCTGCTTCCA
CCTCCGGCAACAGATGCAACCACAGCATACAGTTGGACAACCCAAAGGTT
GTGGACAAGGTCGGATTTACGGAGATTGAGGAGCTGCCGTCCTGCAAGAA
GAACGGCACGGCTGTGTTTTGCCGATGCTGGAAGTCAAAGAATTTCCCAT
ACTGCGATGGCTCGCACGCCACGCACAACCGCGAAACCGGCGACAACGTT
GGTCCCCTCATCATTGCGAAGGACAAGTAG