mRNA_13256 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Match: A0A835ZFG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFG8_9STRA) HSP 1 Score: 500 bits (1287), Expect = 2.770e-173 Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 1
Query: 1 MSRPNNPISEKRAALDLRASGADGTRRXXXXXXXXXXXREEAPLLQKRPKPTSIDGESLDMLIKVFTMLAQNRLLPKPGWGLCRSMHQKVHDIDPLLAVALSPVRASVGSVDLGHSDWFDVLFKDVIVLTLREFRGVFTRIPRSLQEVHLVQCDTGRVLPMLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLTSLPDGISNLASIGDXXXXXXXXXXXXXXXXXXXXXXXXXVSLVQLNLXXXXXXXXXXXXXXXXXPSKALDLCYCTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSCLGELVQLXXXXXXXXXXXXXXXXXXXXXXXXKKSTQTGAERLTQSVNALQQRNLAQLSLEVQK 1203
MSRPNNPISEKRAALDLRASGADGTRRXXXXXXXXXXXREEAPLLQKRPKPTSIDGESLDMLIKVFTMLAQNRLLPKPGWGLCRSMHQKVHDIDPLLAVALSPVRASVGSVDLGHSDWFDVLFKDVIVLTLREFRGVFTRIPRSLQEVHLVQCDTGRVLPMLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLTSLPDGISNLASIGDXXXXXXXXXXXXXXXXXXXXXXXXXVSLVQLNLXXXXXXXXXXXXXXXXXPSKALDLCYCTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSCLGELVQLXXXXXXXXXXXXXXXXXXXXXXXXKKSTQTGAERLTQSVNALQQRNLAQLSLEVQK
Sbjct: 1 MSRPNNPISEKRAALDLRASGADGTRRXXXXXXXXXXXREEAPLLQKRPKPTSIDGESLDMLIKVFTMLAQNRLLPKPGWGLCRSMHQKVHDIDPLLAVALSPVRASVGSVDLGHSDWFDVLFKDVIVLTLREFRGVFTRIPRSLQEVHLVQCDTGRVLPMLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLTSLPDGISNLASIGDXXXXXXXXXXXXXXXXXXXXXXXXXVSLVQLNLXXXXXXXXXXXXXXXXXPSKALDLCYCTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSCLGELVQLXXXXXXXXXXXXXXXXXXXXXXXXKKSTQTGAERLTQSVNALQQRNLAQLSLEVQK 401
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Match: A0A835Z149_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z149_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.340e-34 Identity = 81/180 (45.00%), Postives = 110/180 (61.11%), Query Frame = 1
Query: 115 REEAPLLQKRPKPTSIDGESLDMLIKVFTMLAQNRLLPKPGWGLCRSMHQKVH---DIDPLLAVALSPVRASVGSVDLGHSDWFDVLFKDVIVLTLREFRGVFTRIPRSLQEVHLVQCDTGRVLPMLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLT 645
+ +AP +Q+R K + D L +V T++AQNRLLPK WG+CRSMH+K+ D DPL+A++LSP G+ D FD LF+DV +TL +G TR+P SLQE+HL+ C+ +LP+LRTA+R T +G Q+D L LV LPD VG L A+T + L C RLT
Sbjct: 41 QSKAPPVQQRHKASKRQDVRPDAL-QVLTVMAQNRLLPKSAWGMCRSMHRKLEGRFDADPLVALSLSPPAPGAGA-----RDRFDGLFEDVKAMTLCGMQGTLTRVPCSLQELHLLACNPMEMLPLLRTALRLTDSGPQSDVLTLVRR---------LPDSVGDLRALTALDLRACTRLT 205
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Match: A0A835Z3S6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S6_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 5.170e-10 Identity = 53/190 (27.89%), Postives = 77/190 (40.53%), Query Frame = 1
Query: 205 LAQNRLLPKPGWGLCRSMHQKVH----------------------------------DIDPLLAVALSPVRASVGSVDLGHSDWFDVLFKDVIVLTLREFRGVFTRIPRSLQEVHLVQCDTGRVLPMLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLTSLPDGISNL 672
+A+ RLLPKP W LC S+H V D DPLL +A + A G+ ++ D F++V V+TL IP LQE+HL C+ + +L A +D LA + +R SL G S++T + L C+ + +LPD I L
Sbjct: 1 MAETRLLPKPAWSLCTSVHHTVRPIVHLRLDKNLPLAATAEAFVRKIVARLSLSGPFDADPLLTLAAASPSAPPGA---STTESLDAFFREVKVMTLYRPGVRLAHIPPPLQELHLDHCEPHVLGALLHALTHAAQPDLPSDTLAPAGPLSAQNRSMSLSKRAGGRSSLTSLNLLACNFIKNLPDSIGKL 187
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Match: A0A836CKU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKU4_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 5.010e-8 Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 481 MLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLT 645
MLRTA+RAT GFQADAL LV S S R ASLPD+ GALSA+T L GC+ LT
Sbjct: 1 MLRTAIRATDDGFQADALPLVRSLAPSRRAASLPDDFGALSALTDCDLHGCEYLT 55
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Match: A0A835YQD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQD9_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 6.230e-8 Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 1
Query: 481 MLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRL 642
MLRTA+RAT GFQADAL+LV S ++RV SLPD++ LSA+T V +S C++L
Sbjct: 1 MLRTAIRATDTGFQADALSLVQSLVPNERVTSLPDDISVLSALTAVDVSSCEKL 54
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Match: A0A835Z5Y8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Y8_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 4.640e-7 Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 481 MLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLT 645
MLRTA+RAT GFQADAL LV + R ASLPD+ GALSA+T L GC+ LT
Sbjct: 1 MLRTAIRATDDGFQADALPLVRPLAPTKRAASLPDDFGALSALTDCDLHGCEYLT 55 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13256 ID=mRNA_13256|Name=jgi.p|Trimin1|352405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1330bp|location=Sequence derived from alignment at Contig_118:274406..277127+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCGCGCCCCAACAACCCCATTAGTGAGAAGCGCGCTGCGCTGGACCTback to top protein sequence of jgi.p|Trimin1|352405 >Trimin1|352405|estExt_Genemark1.C_Ctg_1180031 ID=Trimin1|352405|estExt_Genemark1.C_Ctg_1180031|Name=jgi.p|Trimin1|352405|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=402bp MSRPNNPISEKRAALDLRASGADGTRRREDDGGDDGGAREEAPLLQKRPKback to top mRNA from alignment at Contig_118:274406..277127+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13256 ID=mRNA_13256|Name=jgi.p|Trimin1|352405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2722bp|location=Sequence derived from alignment at Contig_118:274406..277127+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_118:274406..277127+ >mRNA_13256 ID=mRNA_13256|Name=jgi.p|Trimin1|352405|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1206bp|location=Sequence derived from alignment at Contig_118:274406..277127+ (Tribonema minus UTEX_B_3156 )back to top |