Trimin1|352405|estExt_Genemark1.C_Ctg_1180031 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352405
Unique NameTrimin1|352405|estExt_Genemark1.C_Ctg_1180031
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length402
Homology
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Match: A0A835ZFG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFG8_9STRA)

HSP 1 Score: 500 bits (1288), Expect = 4.190e-174
Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0
Query:    1 MSRPNNPISEKRAALDLRASGADGTRRXXXXXXXXXXXREEAPLLQKRPKPTSIDGESLDMLIKVFTMLAQNRLLPKPGWGLCRSMHQKVHDIDPLLAVALSPVRASVGSVDLGHSDWFDVLFKDVIVLTLREFRGVFTRIPRSLQEVHLVQCDTGRVLPMLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLTSLPDGISNLASIGDXXXXXXXXXXXXXXXXXXXXXXXXXVSLVQLNLXXXXXXXXXXXXXXXXXPSKALDLCYCTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSCLGELVQLXXXXXXXXXXXXXXXXXXXXXXXXKKSTQTGAERLTQSVNALQQRNLAQLSLEVQK 401
            MSRPNNPISEKRAALDLRASGADGTRRXXXXXXXXXXXREEAPLLQKRPKPTSIDGESLDMLIKVFTMLAQNRLLPKPGWGLCRSMHQKVHDIDPLLAVALSPVRASVGSVDLGHSDWFDVLFKDVIVLTLREFRGVFTRIPRSLQEVHLVQCDTGRVLPMLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLTSLPDGISNLASIGDXXXXXXXXXXXXXXXXXXXXXXXXXVSLVQLNLXXXXXXXXXXXXXXXXXPSKALDLCYCTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSCLGELVQLXXXXXXXXXXXXXXXXXXXXXXXXKKSTQTGAERLTQSVNALQQRNLAQLSLEVQK
Sbjct:    1 MSRPNNPISEKRAALDLRASGADGTRRXXXXXXXXXXXREEAPLLQKRPKPTSIDGESLDMLIKVFTMLAQNRLLPKPGWGLCRSMHQKVHDIDPLLAVALSPVRASVGSVDLGHSDWFDVLFKDVIVLTLREFRGVFTRIPRSLQEVHLVQCDTGRVLPMLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLTSLPDGISNLASIGDXXXXXXXXXXXXXXXXXXXXXXXXXVSLVQLNLXXXXXXXXXXXXXXXXXPSKALDLCYCTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSCLGELVQLXXXXXXXXXXXXXXXXXXXXXXXXKKSTQTGAERLTQSVNALQQRNLAQLSLEVQK 401          
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Match: A0A835Z149_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z149_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.230e-35
Identity = 81/180 (45.00%), Postives = 110/180 (61.11%), Query Frame = 0
Query:   39 REEAPLLQKRPKPTSIDGESLDMLIKVFTMLAQNRLLPKPGWGLCRSMHQKVH---DIDPLLAVALSPVRASVGSVDLGHSDWFDVLFKDVIVLTLREFRGVFTRIPRSLQEVHLVQCDTGRVLPMLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLT 215
            + +AP +Q+R K +       D L +V T++AQNRLLPK  WG+CRSMH+K+    D DPL+A++LSP     G+      D FD LF+DV  +TL   +G  TR+P SLQE+HL+ C+   +LP+LRTA+R T +G Q+D L LV           LPD VG L A+T + L  C RLT
Sbjct:   41 QSKAPPVQQRHKASKRQDVRPDAL-QVLTVMAQNRLLPKSAWGMCRSMHRKLEGRFDADPLVALSLSPPAPGAGA-----RDRFDGLFEDVKAMTLCGMQGTLTRVPCSLQELHLLACNPMEMLPLLRTALRLTDSGPQSDVLTLVRR---------LPDSVGDLRALTALDLRACTRLT 205          
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Match: A0A835Z3S6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.860e-10
Identity = 53/190 (27.89%), Postives = 77/190 (40.53%), Query Frame = 0
Query:   69 LAQNRLLPKPGWGLCRSMHQKVH----------------------------------DIDPLLAVALSPVRASVGSVDLGHSDWFDVLFKDVIVLTLREFRGVFTRIPRSLQEVHLVQCDTGRVLPMLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLTSLPDGISNL 224
            +A+ RLLPKP W LC S+H  V                                   D DPLL +A +   A  G+     ++  D  F++V V+TL         IP  LQE+HL  C+   +  +L     A      +D LA     +  +R  SL    G  S++T + L  C+ + +LPD I  L
Sbjct:    1 MAETRLLPKPAWSLCTSVHHTVRPIVHLRLDKNLPLAATAEAFVRKIVARLSLSGPFDADPLLTLAAASPSAPPGA---STTESLDAFFREVKVMTLYRPGVRLAHIPPPLQELHLDHCEPHVLGALLHALTHAAQPDLPSDTLAPAGPLSAQNRSMSLSKRAGGRSSLTSLNLLACNFIKNLPDSIGKL 187          
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Match: A0A836CDK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.370e-9
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 0
Query:  141 IPRSLQEVHLVQCDTGRVLPMLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLTS 216
            +PR+LQE+ + +CD   VLP L   +R T AG QADAL LV S + S  ++ LP   G LSA+TV+ L+ C  L S
Sbjct:    1 MPRALQELRIAECDLSSVLPQLHALIRFTNAGPQADALTLVKSISASSTLSLLPTCFGGLSALTVLDLTNCAELDS 76          
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Match: A0A836CKU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKU4_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.120e-8
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 0
Query:  161 MLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLT 215
            MLRTA+RAT  GFQADAL LV S   S R ASLPD+ GALSA+T   L GC+ LT
Sbjct:    1 MLRTAIRATDDGFQADALPLVRSLAPSRRAASLPDDFGALSALTDCDLHGCEYLT 55          
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Match: A0A835YQD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQD9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.850e-8
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 0
Query:  161 MLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRL 214
            MLRTA+RAT  GFQADAL+LV S   ++RV SLPD++  LSA+T V +S C++L
Sbjct:    1 MLRTAIRATDTGFQADALSLVQSLVPNERVTSLPDDISVLSALTAVDVSSCEKL 54          
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Match: A0A835Z5Y8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Y8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.800e-7
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0
Query:  161 MLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLT 215
            MLRTA+RAT  GFQADAL LV     + R ASLPD+ GALSA+T   L GC+ LT
Sbjct:    1 MLRTAIRATDDGFQADALPLVRPLAPTKRAASLPDDFGALSALTDCDLHGCEYLT 55          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352405 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835ZFG8_9STRA4.190e-174100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z149_9STRA6.230e-3545.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3S6_9STRA3.860e-1027.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDK2_9STRA3.370e-947.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKU4_9STRA4.120e-865.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQD9_9STRA4.850e-859.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5Y8_9STRA3.800e-761.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 187..392
e-value: 2.5E-36
score: 126.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..46
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 155..317
NoneNo IPR availablePANTHERPTHR16083:SF24BNAANNG23130D PROTEINcoord: 155..317
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 226..371
NoneNo IPR availablePANTHERPTHR16083:SF24BNAANNG23130D PROTEINcoord: 226..371
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 142..370

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_118contigContig_118:274406..277003 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352405mRNA_13256Tribonema minus UTEX_B_3156 mRNAContig_118 274406..277127 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352405|estExt_Genemark1.C_Ctg_1180031 ID=Trimin1|352405|estExt_Genemark1.C_Ctg_1180031|Name=jgi.p|Trimin1|352405|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=402bp
MSRPNNPISEKRAALDLRASGADGTRRREDDGGDDGGAREEAPLLQKRPK
PTSIDGESLDMLIKVFTMLAQNRLLPKPGWGLCRSMHQKVHDIDPLLAVA
LSPVRASVGSVDLGHSDWFDVLFKDVIVLTLREFRGVFTRIPRSLQEVHL
VQCDTGRVLPMLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGAL
SAVTVVVLSGCDRLTSLPDGISNLASIGDLAALTALDLSECEGLSRLPDG
IGNLVSLVQLNLNACTALTVPPDSIGNLAPSKALDLCYCTLPDAIGALRS
LRVLHLAECEALTALPNLPALSQLNLRSCSSLLELPSCLGELVQLTALDL
SACSQLASLPNTLGKLAQLKKSTQTGAERLTQSVNALQQRNLAQLSLEVQ
K*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf