mRNA_13249 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|352400
Unique Name	mRNA_13249
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|352400 vs. uniprot
Match: A0A835ZCK6_9STRA (Beta-lactamase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK6_9STRA)

HSP 1 Score: 608 bits (1569), Expect = 5.210e-218
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 1

Query:    1 MRADASSSMDASSSTQEAAARMIDTGKTFREGVLRWYPRHDVTSLDGIVLSHDHADAILGLDDVRGLQNSADPPTPVLVDSRTMHSLQRVFPYLCGTNGKAGIRHVAALDFRTFTPHEPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRERIALLVVDALLKDRAHPTHFSMAQSVELARDLRAACARIFTAASRALPHALRALTCLPAHPAPRQPLRTLMVGTGSDHHDLHAPVYATVACRRAATGSNLPGPVXXXXXXXXXXXXXXSHMEYTATNAELARLRETDGLDVQLARDGLRVEIE 975
            MRADASSSMDASSSTQEAAARMIDTGKTFREGVLRWYPRHDVTSLDGIVLSHDHADAILGLDDVRGLQNSADPPTPVLVDSRTMHSLQRVFPYLCGTNGKAGIRHVAALDFRTFTPHEPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRERIALLVVDALLKDRAHPTHFSMAQSVELARDLRAACARIFTAASRALPHALRALTCLPAHPAPRQPLRTLMVGTGSDHHDLHAPVYATVACRRAATGSNLPGPVXXXXXXXXXXXXXXSHMEYTATNAELARLRETDGLDVQLARDGLRVEIE
Sbjct:    1 MRADASSSMDASSSTQEAAARMIDTGKTFREGVLRWYPRHDVTSLDGIVLSHDHADAILGLDDVRGLQNSADPPTPVLVDSRTMHSLQRVFPYLCGTNGKAGIRHVAALDFRTFTPHEPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRERIALLVVDALLKDRAHPTHFSMAQSVELARDLRAACARIFTAASRALPHALRALTCLPAHPAPRQPLRTLMVGTGSDHHDLHAPVYATVACRRAATGSNLPGPVXXXXXXXXXXXXXXSHMEYTATNAELARLRETDGLDVQLARDGLRVEIE 325

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BLAST of jgi.p|Trimin1|352400 vs. uniprot
Match: D7G4W1_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W1_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 6.890e-56
Identity = 108/189 (57.14%), Postives = 133/189 (70.37%), Query Frame = 1

Query:   67 IDTGKTFREGVLRWYPRHDVTSLDGIVLSHDHADAILGLDDVRGLQNSAD-PPTPVLVDSRTMHSLQRVFPYLCGT---NGKAGIRHVAALDFRTFTPHEPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRER-IALLVVDALLKDRAHPTHFSMAQSVELARDLRA 618
            IDTGKT+REG +RW+PRH V  LDGIVL+HDHADA+LGLDDVR +Q+S    PTPV V  RT  S++RVFPYL G    NG AG R VAAL+F  F   +PF V GL + P PV+HGEDY+S+GF+FGP   +  YISD SRVPP++M  L +   + LLV DAL+  + H THF +  SV LA  L+A
Sbjct:  260 IDTGKTWREGAIRWFPRHGVRGLDGIVLTHDHADAMLGLDDVRSIQDSRKRTPTPVHVSERTDRSVRRVFPYLVGREDDNG-AGGRFVAALNFNVFQDFQPFEVGGLEITPFPVMHGEDYVSHGFLFGPEGNKICYISDVSRVPPESMEFLEKHGPMQLLVCDALMVSKKHRTHFCVEDSVVLAGQLKA 447

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BLAST of jgi.p|Trimin1|352400 vs. uniprot
Match: A0A6H5JEM8_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM8_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.260e-54
Identity = 102/175 (58.29%), Postives = 125/175 (71.43%), Query Frame = 1

Query:   67 IDTGKTFREGVLRWYPRHDVTSLDGIVLSHDHADAILGLDDVRGLQNSAD-PPTPVLVDSRTMHSLQRVFPYLCGT---NGKAGIRHVAALDFRTFTPHEPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRER-IALLVVDALLKDRAHPTHF 576
            IDTGKT+REG +RW+PRH V  LDGIVL+HDHADA+LGLDDVR +Q+S    PTPV V  RT  S++RVFPYL G    NG AG R VAAL+F  F   +PF V GL + P PV+HGEDY+S+GF+FGP   +  YISD SRVPP++M  L +   + LLV DAL+  + H THF
Sbjct:  199 IDTGKTWREGAIRWFPRHGVRGLDGIVLTHDHADAMLGLDDVRSIQDSRKRTPTPVHVSERTDRSVRRVFPYLVGREDDNG-AGGRFVAALNFNVFQDFQPFEVGGLEITPFPVMHGEDYVSHGFLFGPEGNKICYISDVSRVPPESMEFLEKHGPMQLLVCDALMVSKKHRTHF 372

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BLAST of jgi.p|Trimin1|352400 vs. uniprot
Match: A0A5J4ZQL0_9ASTE (Lactamase_B domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZQL0_9ASTE)

HSP 1 Score: 160 bits (404), Expect = 1.980e-42
Identity = 83/191 (43.46%), Postives = 123/191 (64.40%), Query Frame = 1

Query:   64 MIDTGKTFREGVLRWYPRHDVTSLDGIVLSHDHADAILGLDDVRGLQNSADP----PTPVLVDSRTMHSLQRVFPYLCGTNGKAG--IRHVAALDFRTFTP--HEPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRERIALLVVDALLKDRAHPTHFSMAQSVELARDL 612
            +ID GKTFRE VLRW+ +H ++ +D IVL+H+HADA+LGLDD+R +Q  +      PTP+ +    M S+   FPYL     KAG  +R VA LD++      ++PF  +GL ++P+PV+HGEDY+S GF+FG  + R  YISD SR  P T   +  +++ LL++D L K+ +H  HF + Q++E  + L
Sbjct:   82 LIDVGKTFREQVLRWFTQHKISRVDSIVLTHEHADAVLGLDDIRAVQPYSPTNDIEPTPIYLTQYAMDSIAEKFPYLVRKKLKAGQEVRRVAQLDWKIIENDCNKPFIASGLELIPLPVMHGEDYVSLGFLFG-ENCRVAYISDVSRFLPPTEHYISSQQLDLLILDTLYKNGSHNVHFCLPQTLEAVKKL 271

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BLAST of jgi.p|Trimin1|352400 vs. uniprot
Match: A0A0A0LVQ4_CUCSA (Lactamase_B domain-containing protein n=5 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0LVQ4_CUCSA)

HSP 1 Score: 160 bits (404), Expect = 2.300e-42
Identity = 86/195 (44.10%), Postives = 122/195 (62.56%), Query Frame = 1

Query:   64 MIDTGKTFREGVLRWYPRHDVTSLDGIVLSHDHADAILGLDDVRGLQ-----NSADPPTPVLVDSRTMHSLQRVFPYLCGTNGKAG--IRHVAALDFRTFTPH--EPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRE---RIALLVVDALLKDRAHPTHFSMAQSVELARDL 612
            +ID GKTFRE VLRW+  H +  +D I+L+H+HADAILGLDD+R +Q     N  DP TP+ +   +M S+   FPYL     K G  +R VA LD++    H  +PF  +GL  +P+PV+HGEDY+  GF+FG  + R  YISD SR+PP T  V+      ++ LL++D L K+ +H THF   Q+++  + L
Sbjct:   85 LIDVGKTFREQVLRWFTHHRIPKVDSIILTHEHADAILGLDDIRAVQPFNAVNDIDP-TPIYLSQHSMESISVKFPYLVQKKLKEGQEVRRVAQLDWKIIENHHEKPFVASGLRFIPLPVMHGEDYICLGFLFGENY-RVAYISDVSRIPPSTEHVISINGAGQVDLLILDTLYKNGSHNTHFCFPQTLDAVKKL 277

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BLAST of jgi.p|Trimin1|352400 vs. uniprot
Match: A0A7J7CQF8_TRIWF (Putative hydrolase n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CQF8_TRIWF)

HSP 1 Score: 158 bits (399), Expect = 3.170e-42
Identity = 85/195 (43.59%), Postives = 122/195 (62.56%), Query Frame = 1

Query:   64 MIDTGKTFREGVLRWYPRHDVTSLDGIVLSHDHADAILGLDDVRGLQ-----NSADPPTPVLVDSRTMHSLQRVFPYLCGTNGKAG--IRHVAALDFRTFTPH--EPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRE---RIALLVVDALLKDRAHPTHFSMAQSVELARDL 612
            +ID GKTFRE VLRW+  H +  +D I+L+H+HADA+LGLDD+R +Q     N  DP TP+ +    M+S+   FPYL     K G  +R VA LD++    H  +PF  +GL  +P+PV+HG+DY+  GF+FG   +R  YISD SR+P  T  VL +    ++ LL++D L K R+H  HF + Q++E  + L
Sbjct:   32 LIDAGKTFREQVLRWFTFHKIPQVDSILLTHEHADAVLGLDDIRAVQPYSPINDIDP-TPIYLSQHAMNSISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEHCDKPFVASGLHFVPLPVMHGKDYICLGFLFG-EKSRVAYISDVSRIPSTTEYVLSKTGAGQLDLLILDTLYKSRSHNVHFCLPQTLEAVKKL 224

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BLAST of jgi.p|Trimin1|352400 vs. uniprot
Match: V4UDI0_CITCL (Lactamase_B domain-containing protein n=3 Tax=Citrus TaxID=2706 RepID=V4UDI0_CITCL)

HSP 1 Score: 159 bits (402), Expect = 4.740e-42
Identity = 86/195 (44.10%), Postives = 120/195 (61.54%), Query Frame = 1

Query:   64 MIDTGKTFREGVLRWYPRHDVTSLDGIVLSHDHADAILGLDDVRGLQ-----NSADPPTPVLVDSRTMHSLQRVFPYLCGTNGKAG--IRHVAALDFRTFTPH--EPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRE---RIALLVVDALLKDRAHPTHFSMAQSVELARDL 612
            +ID GKTFRE +LRW+  H +  +D I+L+H+HADA+LGLDD+R +Q     N  DP TP+ +    M S+   FPYL     K G  +R VA LD++       +PF V+GL  +P+PV+HGEDY+  GF+FG    R  YISD SR+PP T  V+ +    ++ LL++D L KD  H THF   Q++E  + L
Sbjct:   87 LIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDP-TPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVVSGLKFVPLPVMHGEDYVCLGFLFG-EKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRL 279

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BLAST of jgi.p|Trimin1|352400 vs. uniprot
Match: A0A835UR71_VANPL (Lactamase_B domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UR71_VANPL)

HSP 1 Score: 159 bits (401), Expect = 9.300e-42
Identity = 83/195 (42.56%), Postives = 122/195 (62.56%), Query Frame = 1

Query:   64 MIDTGKTFREGVLRWYPRHDVTSLDGIVLSHDHADAILGLDDVRGLQNSADP----PTPVLVDSRTMHSLQRVFPYLCGTNGKAG--IRHVAALDFRTFTP--HEPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRE---RIALLVVDALLKDRAHPTHFSMAQSVELARDLR 615
            +ID GKTFRE VLRW+  H +  +D I+L+H+HADA+LGLDD+R +Q  +      PTPV +    M S++  FPYL     K G  +R +A LD+R   P   +PF  +G+  +P+PV+HGEDY+  GF+FG   +R  YISD SR+P  T  V+ +    ++ LL++D L K+ +H THF + QS++  +  R
Sbjct:  101 LIDVGKTFREQVLRWFTHHKIPRVDSIILTHEHADAVLGLDDIRAVQPHSPTNDIEPTPVYLTQYAMDSIKEKFPYLVKKKLKEGEEVRRIAQLDWRIIEPDCEKPFISSGIEFIPLPVMHGEDYVCLGFLFG-KKSRIAYISDVSRIPASTEQVISKSEEWQLDLLILDTLYKEGSHNTHFCLTQSLDAVKRTR 294

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BLAST of jgi.p|Trimin1|352400 vs. uniprot
Match: A0A7J7E332_TRIWF (Lactamase_B domain-containing protein n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7E332_TRIWF)

HSP 1 Score: 158 bits (400), Expect = 1.080e-41
Identity = 86/195 (44.10%), Postives = 122/195 (62.56%), Query Frame = 1

Query:   64 MIDTGKTFREGVLRWYPRHDVTSLDGIVLSHDHADAILGLDDVRGLQ-----NSADPPTPVLVDSRTMHSLQRVFPYLCGTNGKAG--IRHVAALDFRTFTPH--EPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRE---RIALLVVDALLKDRAHPTHFSMAQSVELARDL 612
            +ID GKTFRE VLRW+  H +  +D I+L+H+HADA+LGLDD+R +Q     N  DP TP+ +    M+S+   FPYL     K G  +R VA LD++    H  +PF  +GL  +P+PV+HGEDY+  GF+FG   +R  YISD SR+P  T  VL +    ++ LL++D L K+ +H THF   Q++E  + L
Sbjct:   93 LIDVGKTFREQVLRWFTFHKIPQVDSILLTHEHADAVLGLDDIRAVQPFSPINDIDP-TPIYLSQHAMNSISTKFPYLVRKKLKEGQEVRRVAQLDWKIIEEHCDKPFVASGLHFVPLPVMHGEDYICLGFLFG-EKSRVAYISDVSRIPSTTEYVLSKTGAGQLDLLILDTLYKNGSHNTHFCFPQTLEAVKKL 285

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BLAST of jgi.p|Trimin1|352400 vs. uniprot
Match: UPI001CF9B94E (putative hydrolase C777.06c n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CF9B94E)

HSP 1 Score: 157 bits (397), Expect = 2.430e-41
Identity = 87/195 (44.62%), Postives = 122/195 (62.56%), Query Frame = 1

Query:   64 MIDTGKTFREGVLRWYPRHDVTSLDGIVLSHDHADAILGLDDVRGLQ-----NSADPPTPVLVDSRTMHSLQRVFPYLCGTNGKAG--IRHVAALDFRTFTPH--EPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRE---RIALLVVDALLKDRAHPTHFSMAQSVELARDL 612
            +ID GKTFRE VLRW+  H +  +D I+L+H+HADA+LGLDD+RG+Q     N  DP TPV +    M S+   FPYL     K G  IR VA +D++       +PF  +GL ++P+PV+HGEDY+S GF+FG    R  YISD SR+P  T  V+ +    ++ LL++D L K  +H THF + Q++E  + L
Sbjct:   85 LIDVGKTFREQVLRWFTFHKIPRVDSIILTHEHADAVLGLDDIRGVQPYSATNDIDP-TPVYLTQFAMESVSVKFPYLIRKKLKEGQEIRRVAQVDWKIIEEQCDKPFVASGLKLIPLPVMHGEDYVSLGFLFG-EKCRVAYISDVSRIPSSTEYVISKSGAGQLDLLILDTLYKKGSHNTHFCLPQTLEAVKRL 277

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352400 vs. uniprot

BLAST of jgi.p|Trimin1|352400 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZCK6_9STRA	5.210e-218	100.00	Beta-lactamase-like protein n=1 Tax=Tribonema minu...	[more]
D7G4W1_ECTSI	6.890e-56	57.14	Lactamase_B domain-containing protein n=1 Tax=Ecto...	[more]
A0A6H5JEM8_9PHAE	1.260e-54	58.29	Lactamase_B domain-containing protein n=1 Tax=Ecto...	[more]
A0A5J4ZQL0_9ASTE	1.980e-42	43.46	Lactamase_B domain-containing protein n=1 Tax=Nyss...	[more]
A0A0A0LVQ4_CUCSA	2.300e-42	44.10	Lactamase_B domain-containing protein n=5 Tax=Cucu...	[more]
A0A7J7CQF8_TRIWF	3.170e-42	43.59	Putative hydrolase n=2 Tax=Tripterygium wilfordii ...	[more]
V4UDI0_CITCL	4.740e-42	44.10	Lactamase_B domain-containing protein n=3 Tax=Citr...	[more]
A0A835UR71_VANPL	9.300e-42	42.56	Lactamase_B domain-containing protein n=1 Tax=Vani...	[more]
A0A7J7E332_TRIWF	1.080e-41	44.10	Lactamase_B domain-containing protein n=2 Tax=Trip...	[more]
UPI001CF9B94E	2.430e-41	44.62	putative hydrolase C777.06c n=2 Tax=Anacardiaceae ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_118	contig	Contig_118:239588..244795 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|352400\|estExt_Genemark1.C_Ctg_1180024
BRITE	ko00000,ko00001,ko01000
KEGG rclass	RC00296
KEGG Reaction	R10205
KEGG Pathway	ko00440,map00440
KEGG ko	ko:K06167
EC	3.1.4.55
GOs	GO:0003674,GO:0003824,GO:0016787
Description	Beta-lactamase superfamily domain
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG1235@1\|root,2QWBK@2759\|Eukaryota
Evalue	4.18e-57
Seed ortholog	2880.D7G4W1
Hectar predicted targeting category	other localisation
TranscriptId	352722
Track	FilteredModels1
ProteinId	352400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352400	gene_13249	Tribonema minus UTEX_B_3156	gene	Contig_118 239588..244795 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352400	Trimin1\|352400\|estExt_Genemark1.C_Ctg_1180024	Tribonema minus UTEX_B_3156	polypeptide	Contig_118 239588..244693 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13249_1	exon_13249_1	Tribonema minus UTEX_B_3156	exon	Contig_118 239588..239653 +
exon_13249_2	exon_13249_2	Tribonema minus UTEX_B_3156	exon	Contig_118 240225..240311 +
exon_13249_3	exon_13249_3	Tribonema minus UTEX_B_3156	exon	Contig_118 241437..241503 +
exon_13249_4	exon_13249_4	Tribonema minus UTEX_B_3156	exon	Contig_118 241817..241896 +
exon_13249_5	exon_13249_5	Tribonema minus UTEX_B_3156	exon	Contig_118 242514..242597 +
exon_13249_6	exon_13249_6	Tribonema minus UTEX_B_3156	exon	Contig_118 243272..243502 +
exon_13249_7	exon_13249_7	Tribonema minus UTEX_B_3156	exon	Contig_118 244068..244102 +
exon_13249_8	exon_13249_8	Tribonema minus UTEX_B_3156	exon	Contig_118 244230..244419 +
exon_13249_9	exon_13249_9	Tribonema minus UTEX_B_3156	exon	Contig_118 244487..244795 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13249	CDS_13249	Tribonema minus UTEX_B_3156	CDS	Contig_118 239588..239653 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_13249	UTR3_13249	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_118 244694..244795 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_118:239588..244795+
coding sequence from alignment at Contig_118:239588..244795+

spliced messenger RNA

>mRNA_13249 ID=mRNA_13249|Name=jgi.p|Trimin1|352400|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1149bp|location=Sequence derived from alignment at Contig_118:239588..244795+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCAGACGCGTCGTCGTCGATGGACGCATCGTCGTCGACGCAGGA
GGCGGCTGCGCGCATGATCGACACGGGGAAAACATTCAGGGAGGGCGTGC
TGCGGTGGTACCCGCGGCACGACGTGACGTCGCTGGATGGCATCGTTCTG
AGCCACGACCACGCCGACGCGATACTCGGTCTGGACGACGTGCGCGGCCT
GCAGAACTCGGCCGATCCACCAACGCCGGTGCTGGTGGACAGCAGGACGA
TGCACTCCCTGCAGCGCGTGTTCCCCTACCTGTGCGGGACCAATGGCAAG
GCTGGCATTCGGCATGTGGCAGCGCTCGACTTCAGAACCTTCACGCCGCA
CGAGCCATTCACGGTGGCAGGGCTGACGATGCTTCCCATCCCCGTCGTCC
ACGGCGAGGACTACATGAGCAACGGCTTCATCTTCGGGCCGGCGCACGCG
CGCACCGTGTACATCAGTGACTGCAGCCGCGTGCCGCCGGACACCATGGC
AGTGCTCAGGCGCGAGCGCATCGCGCTGCTGGTTGTGGACGCGCTCCTCA
AGGACAGGGCGCACCCCACGCACTTCAGCATGGCGCAGTCCGTGGAGCTG
GCGCGCGACCTGCGGGCAGCATGTGCTAGGATCTTCACCGCCGCAAGCCG
CGCGTTGCCTCACGCGCTGCGCGCCCTCACCTGCCTGCCCGCCCACCCTG
CGCCGCGGCAGCCGCTGCGCACGCTCATGGTGGGCACGGGCTCCGATCAC
CATGATCTTCACGCGCCCGTGTACGCTACAGTCGCCTGTCGTCGCGCCGC
AACCGGCAGCAACCTGCCAGGACCTGTACCGCCGCACGCCCCGCTGCGCA
CGCTCATGGTCGGCATGGGCTCGCACATGGAGTACACCGCCACCAACGCG
GAGCTGGCACGGCTCAGAGAGACGGACGGCCTTGATGTGCAGCTCGCGCG
CGATGGCCTGCGCGTGGAGATCGAGCTGGAAGAGGAGGACGGTGCCGCTG
CTGCTGCCGCCGCCGCCGCTGCTGCCGCCGCTGTGCAGTCAAAGTAGGGG
TAGGCATGTGCTGCCGCCCCGCCTCTGCCTCTGCCGCCGCTGCGCAGTCA
AAGTAGCGGTAGGCGTGCATTAGGTGCGGGGGCACACATCACATGGAGC

protein sequence of jgi.p|Trimin1|352400

>Trimin1|352400|estExt_Genemark1.C_Ctg_1180024 ID=Trimin1|352400|estExt_Genemark1.C_Ctg_1180024|Name=jgi.p|Trimin1|352400|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=349bp
MRADASSSMDASSSTQEAAARMIDTGKTFREGVLRWYPRHDVTSLDGIVL
SHDHADAILGLDDVRGLQNSADPPTPVLVDSRTMHSLQRVFPYLCGTNGK
AGIRHVAALDFRTFTPHEPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHA
RTVYISDCSRVPPDTMAVLRRERIALLVVDALLKDRAHPTHFSMAQSVEL
ARDLRAACARIFTAASRALPHALRALTCLPAHPAPRQPLRTLMVGTGSDH
HDLHAPVYATVACRRAATGSNLPGPVPPHAPLRTLMVGMGSHMEYTATNA
ELARLRETDGLDVQLARDGLRVEIELEEEDGAAAAAAAAAAAAAVQSK*

mRNA from alignment at Contig_118:239588..244795+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13249 ID=mRNA_13249|Name=jgi.p|Trimin1|352400|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5208bp|location=Sequence derived from alignment at Contig_118:239588..244795+ (Tribonema minus UTEX_B_3156 )
ATGCGCGCAGACGCGTCGTCGTCGATGGACGCATCGTCGTCGACGCAGGA
GGCGGCTGCGCGCATGGTGCGCATCGAAGAGGGGCCCCGCTTCACTGCGT
CCTTGTGTCGAACGTAAAGTTGCTGAGGGCCTTGTGTCGAATGTGAAGTT
GCTGAGGGGCAGCAGCAGCATTGCTCAGCCTGTGTTTCGCGTTGAAGGCG
CGCTGTAGCCCTGTGCAGAACGCGCCGCTCGTGCGTGAGGTCAGTGCTGA
GCACTGCTGCCTGTTCCTGACTGGTGCCTTCAGGGTATCTCCATGTCGTT
GCTCCACTGCGCCATCAGAGCCTTCAGGTGTGCCATTGCGCTATGCCTGC
TGGCCTGCTGCACCCCTGGCCCACAGCAGTTACACGCCTGCAGAAACAGG
GCGCCGCAGTGCCAACTCAGCAAGCCGCGCATCATTGAAGGGCGCGGATG
CAGTCCCGGCTGGCACTTGCAAATAGCATCACATTGTCTAAAGCGCACCG
CATCCAGAGATCCATGTTGTGATGCCTTGCACTGCAGATGGACACGAGGA
AAACGGTGTTACCCGCGGCACAACGATGACATTGTTTAAAGCGCATTGCA
TTGAGGGATATTCATGCTGAGACGCCTTGCACTGCAGATCGACACGGGGA
AAACATTCAGGGAGGGCGTGCTGCGGTGGTACCCGCGGCACGACGTGACG
TCGCTGGATGGCATCGTTCTGAGCGTAAGTCGCAAGCTTTGCGCAGACCT
GGCAAGCTGCTATTGTTGTGAGCGCAAGTGATGAACACTGTGGAGACCTG
GCAAGCTGTTGCTCGTTGGTGAGGGGTAGACATCACGTGACTAAAGCAAC
AGAGGACGGTCGCCAGCCGTGTGCTGGAAGTGAGTGTATTGTGACTCTGG
CCCCATCAGCAAGTGTAACTGCCGTAACCGTCAGCAAGTGATGATGCTTG
CAGAATTTCCGACCGCGCTTGTCGTCTGTGAAATCGGCGGCGCGTTGCAC
TTGGCGAGCGCATCAAGAGTCACTGCATTGCTGCCTGAAGCTATGGCTAG
AGCTGTTTGCAACCATGCCCATGGTGCTCGCACGACCATGCTTACTTTTG
ATCACCATCGCAGCTCCTGATTGGTATGGTCTGCAAAGCCTTCAACTCTG
AGCACATGCGTTGCCCTGAGAGTCATGTGCCAGGTACGGTGCCATGCTTG
TGTTTCACTCCATGGTGCTGCATGTCATCCATTCGGAAATTCTGTGGCTT
TCGAATTTCCGCACATCAAGTCCAGATGTTGAAACGCCGCAATGCGCTGC
GAGGATCTAAGAACGTCTGTGCAACTGCATATTCCAGCACCTGTGCTGCG
TCTACTTACTGATCACTGTATGGGCAACAAGCATCGTTGAAGGGCAGTGC
GGCAGCAAGGGCGCATCCGTCACAAACCTGCGCACGCATGCTCAATAATG
TCATCCACTCGCGTTCAGAGGAACACGTGGCATGTGCCTCCAGCGCACCA
GCGGACGTGTGTGCTAGCGTGCTTGTCAGTCGCCAGCGAGCCACTGGCTT
CGCAGGCAGTAAGACCACATCCGCTAAGCGCTTCGCAGCGCGCATGCGTT
TGTAGCGCACATCACCTGTGCAGCCGGCACGAGCGCTGCCGCCAGTCGCA
CATGCTGCGACAAGCATTTTTGAGTGTTTTTGCTGGCCCCGCAGAGCACG
ATGCGCAGTGCAACCAGCGTGGCGCATCTACATGTACATGCTTCTGTACT
TGGCAGTAATATCTGGTATATTAGAAAAAGTGTACTACTTGTTTGAAAAT
GCGGGCTCTCATTGCTTCGCGCGCTTGCGCCCTCTCCGCTCGTGTGCAGC
ACGACCACGCCGACGCGATACTCGGTCTGGACGACGTGCGCGGCCTGCAG
AACTCGGCCGATCCACGTGAGTCCCCACGCCGCCAGCCGTGTGGTTGAGC
AATGCTGCGTTGCATGCAATGAGGACTGTGCTGTCATCATGTTTCTGTGC
TGCCATCTTGTTTTGTGGATGAGCACGGGCAGATGTCATGTACGCAGATG
CAACCCTATACGTAGACGCGCGGTCGCACGTGCAGCACAACCATACATCC
ATAGCCAGTTGGTCAACTCCTTCGACACGACCAGAGTGCCCCTTGCCTGA
GGCTTGGGTTAGGGCTCAATACAGAATTAGAGTTTGCTTGTGTGCTCAGT
GCTCCGCTCGCCCCGTCTGCATGCTGCAGCAACGCCGGTGCTGGTGGACA
GCAGGACGATGCACTCCCTGCAGCGCGTGTTCCCCTACCTGTGCGGGACC
AATGGCAAGGTAGCTAACCCTGACCCCTAACCTAACCAATATCAAGGTAG
GTAGGTAGGTAGGTAGGAAACCCTAATCCTGACACTGGCCCCAAGGCGCC
CCCCGTGTCTTGTGCAGCAAGTGGGGCTTGGTCGAGCTCACCAGCCTTGC
GTGACTGTGTGCTAATGCCAATGATATTTTCTCGTTGAGTGAGGTATTGT
CTTGGATTGGTATTGAGTTAGCAGCGTTGCTCAAAAAAATGGCAGTCTGG
CGCATACATTGTGTAAGTTGTCGTGAGTTCTCTTGTGTCGGTACTCGGTG
AACAGCGTTGCTCGAACGACTGGCAAGCTGGCTGGCGCATAGATTGTGTA
AGCGCAAGTGCCCCTGCCGAAAGATCTTCCTCGGCTGGTCGGCTGTTCTT
CTCGTTCCGCCTTGGTGCTGAGCGGGCAAGAGTGCTCATCAACAATGCTG
GCGGTGGCGCTCGCGTGCGCAGTTGCCCCCGTCACGCGCACTGTAACGGT
CGCTTATTCGCGACGCCATGCACCTATGTTGTGCTCTCCCGCACCGGCAT
GTGCTGCTTTCTTTAGTAATGCTCACTTTCACGTCCGTGTGCCGAATATC
GTTGCTTGTCACGGTGGTGCTCTCAGGCTGGCATTCGGCATGTGGCAGCG
CTCGACTTCAGAACCTTCACGCCGCACGAGCCATTCACGGTGGCAGGGCT
GACGATGCTTGTGAGTGCCTAGGGTTAGGGGTAGGGTTAGTGTCAGGCTG
TGAGTTGCGCTGTGACTTGTGCACGTCGCCGTTGGGCAGCAAGATGACTT
TTGATGGCGCCTTTGAATTACTTGAATATGCCTATTGCCCATGTGAGTGC
GACATCAATAATGCCGCAGAACACGCAATATGCGTGTGTGAGCACACTTG
CCATGCTGCAGCAGAAGTGGAGTCTTCAGGTCGTGAGTAAACTGTGGTGC
CATTGTGTCCCTGGCACCAGGACTGTGCAACGAACCTTACATTGCAATTG
AGACGTCATTTTACAAGTTCATGTTTTGGCAACTGAGAGCGCCCGGGGCC
GCCGATGCAGACAACCACAAGCACGACAATGCGCCAAGCTGGAAGTGCGT
ATCCAGACAGCTCAATCTCACTTGCCTGCAATTTTTCTGAGTCTCTGCGC
ACTAGGCGTGCTGCAATGACTATCAATGAACACTACAGTCGCCTCAACAT
CTTCACCTTGCTCAGTGAGTGAGAGCACCTGGCACTCACACCCATTCTCC
CCCCCAACTTCACATTGCTCAACTGGGGACGCACATGAACACATCACCGT
TGTCACCTTACGTACCCGCTACCCCCCCCCCCCCTCCGACCACTACCCCC
CCCTCCCCCTTCTCCCCCCCCCCCCCCCCCCCAGCCCATCCCCGTCGTCC
ACGGCGAGGACTACATGAGCAACGGCTTCATCTTCGGGCCGGCGCACGCG
CGCACCGTGTACATCAGTGACTGCAGCCGCGTGCCGCCGGACACCATGGC
AGTGCTCAGGCGCGAGCGCATCGCGCTGCTGGTTGTGGACGCGCTCCTCA
AGGACAGGGCGCACCCCACGCACTTCAGCATGGCGCAGTCCGTGGAGCTG
GCGCGCGACCTGCGGGTGAGCAGGGACCCCTCTCCCCCCCCCCCCCCCCC
GCGCGGTCCCCCGGGGGGGCGGGTCTTGAGCAACAGCGCTCGAAGTGTCA
TGAGCAGCAGCGTTCAGCATGCGGAGGGGTGGCGTCAGACGCGTGTACGC
GTTTAAGCGTTTCTCGTCTGTGACGTCATGTTTCCATACAGCTGTAGGGG
TGAGGGTCAGAGGCCGCATCAACGCCTCAGCATGGAGCTGCAGCGGCGCC
GAGCGCGCGTTCCCGCAGGTCCTCTCACCCCACTGTCTAGTTACCTGCGC
TTTGCTGAATGCCATCGGTAACATGCTCGTGCAACTGTGTGCTGGGAGAT
GGCGTCCATGTCGAGGCGTCCCCTGGCTGCTCCGCATGGACAGGGCCCGA
CCACCCCGCCTGTTCCTTCAGGTCGGGGTTCGCATGTTTGCTGCGGCAAG
GTGGTGTCCGCCTGCCCTTGCGCCCAGCGAGTGCGGTTGGCTCTCTCGTT
CACAGCACGTCGCTGAAGCGGGCTCCGATTATCAGCATCTTCACACAACC
TGGCAGCCGCCTGTCGCCGCGCTGCACCAGGCAGCATGTGCTAGGATCTT
CACCGCCGCAAGCCGGTACGCTGCGGCAGCAACGGGCAGCAACCTGCTAG
GATCATCACCGCCGCACACCGTACGCTGCGCCAACAACAGGCAGCAACTT
GCTGGGATCTTCACCCCCGCACGCCTTACGCCGCTGCGGCAGCGCGTTGC
CTCACGCGCTGCGCGCCCTCACCTGCCTGCCCGCCCACCCTGCGCCGCGG
CAGCCGCTGCGCACGCTCATGGTGGGCACGGGCTCCGATCACCATGATCT
TCACGCGCCCGTGTACGCTACAGTCGCCTGTCGTCGCGCCGCAACCGGCA
GCAACCTGCCAGGACCTGTACCGCCGCACGCCGTACGCTACACACCGCGG
CGCCTCACGCACTGCGCCCTGCCTGCCCGCCTTCCCCGCGCCGCCGCAGC
CGCTGCGCACGCTCATGGTCGGCATGGGCTCGCACATGGAGTACACCGCC
ACCAACGCGGAGCTGGCACGGCTCAGAGAGACGGACGGCCTTGATGTGCA
GCTCGCGCGCGATGGCCTGCGCGTGGAGATCGAGCTGGAAGAGGAGGACG
GTGCCGCTGCTGCTGCCGCCGCCGCCGCTGCTGCCGCCGCTGTGCAGTCA
AAGTAGGGGTAGGCATGTGCTGCCGCCCCGCCTCTGCCTCTGCCGCCGCT
GCGCAGTCAAAGTAGCGGTAGGCGTGCATTAGGTGCGGGGGCACACATCA
CATGGAGC

Coding sequence (CDS) from alignment at Contig_118:239588..244795+

>mRNA_13249 ID=mRNA_13249|Name=jgi.p|Trimin1|352400|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1047bp|location=Sequence derived from alignment at Contig_118:239588..244795+ (Tribonema minus UTEX_B_3156 )
ATGCGCGCAGACGCGTCGTCGTCGATGGACGCATCGTCGTCGACGCAGGA
GGCGGCTGCGCGCATGATCGACACGGGGAAAACATTCAGGGAGGGCGTGC
TGCGGTGGTACCCGCGGCACGACGTGACGTCGCTGGATGGCATCGTTCTG
AGCCACGACCACGCCGACGCGATACTCGGTCTGGACGACGTGCGCGGCCT
GCAGAACTCGGCCGATCCACCAACGCCGGTGCTGGTGGACAGCAGGACGA
TGCACTCCCTGCAGCGCGTGTTCCCCTACCTGTGCGGGACCAATGGCAAG
GCTGGCATTCGGCATGTGGCAGCGCTCGACTTCAGAACCTTCACGCCGCA
CGAGCCATTCACGGTGGCAGGGCTGACGATGCTTCCCATCCCCGTCGTCC
ACGGCGAGGACTACATGAGCAACGGCTTCATCTTCGGGCCGGCGCACGCG
CGCACCGTGTACATCAGTGACTGCAGCCGCGTGCCGCCGGACACCATGGC
AGTGCTCAGGCGCGAGCGCATCGCGCTGCTGGTTGTGGACGCGCTCCTCA
AGGACAGGGCGCACCCCACGCACTTCAGCATGGCGCAGTCCGTGGAGCTG
GCGCGCGACCTGCGGGCAGCATGTGCTAGGATCTTCACCGCCGCAAGCCG
CGCGTTGCCTCACGCGCTGCGCGCCCTCACCTGCCTGCCCGCCCACCCTG
CGCCGCGGCAGCCGCTGCGCACGCTCATGGTGGGCACGGGCTCCGATCAC
CATGATCTTCACGCGCCCGTGTACGCTACAGTCGCCTGTCGTCGCGCCGC
AACCGGCAGCAACCTGCCAGGACCTGTACCGCCGCACGCCCCGCTGCGCA
CGCTCATGGTCGGCATGGGCTCGCACATGGAGTACACCGCCACCAACGCG
GAGCTGGCACGGCTCAGAGAGACGGACGGCCTTGATGTGCAGCTCGCGCG
CGATGGCCTGCGCGTGGAGATCGAGCTGGAAGAGGAGGACGGTGCCGCTG
CTGCTGCCGCCGCCGCCGCTGCTGCCGCCGCTGTGCAGTCAAAGTAG