mRNA_13246 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352398
Unique NamemRNA_13246
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352398 vs. uniprot
Match: A0A836CLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX2_9STRA)

HSP 1 Score: 539 bits (1388), Expect = 3.080e-193
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 1 
Query:    1 MCSQQSSNDALADAEALERERSFYKQQEGEGKARIRPNRGAAEVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDGKGGKELSIQVAKRPSGAGVPWWGGLFEHEDGWGQ 843
            MCSQQSSNDALADAEALERERSFYKQQEGEGKARIRPNRGAAEVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDGKGGKELSIQVAKRPSGAGVPWWGGLFEHEDGWGQ
Sbjct:    1 MCSQQSSNDALADAEALERERSFYKQQEGEGKARIRPNRGAAEVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDGKGGKELSIQVAKRPSGAGVPWWGGLFEHEDGWGQ 281
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BLAST of jgi.p|Trimin1|352398 vs. uniprot
Match: D8LL06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL06_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 6.780e-39
Identity = 73/203 (35.96%), Postives = 111/203 (54.68%), Query Frame = 1 
Query:  127 EVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDE 735
            ++P QR+CH+YRW QT     VE+P+ +AC+ EDL  V+ +  MQ++I++D +F  + G FPG VD R+ ++ +HS  + + Y+ L + KL  PG  E W+ LL+GE  +PT+RF+G T  Y+W Q    I++   VP   T   T +D    G               R+ +S    P+    E +F+G I   D  WML E
Sbjct:   50 DLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFN-EPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYSWKQNAETIELQIPVPDDVTKRKTTLDLDPAGD--------------RIHVSFSNRPDFEPLEGKFKGLISPLDSVWMLGE 237
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BLAST of jgi.p|Trimin1|352398 vs. uniprot
Match: A0A835ZFW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW7_9STRA)

HSP 1 Score: 661 bits (1706), Expect = 1.570e-238
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 1 
Query:    1 MSGTTDDIRVAAQMANNGAGGAPGAPTIATSFLTLPQVTPSRRRGSLPTEGWGEPFEIPLRDEDSGHCQITLEAIRMVKGENGTVTPQHFAKTNISLTPDLRQMKADMFGKVNNKGAPKKLVTLSLTLELFKGQAAAKNRSPRAGRGKLFGALEGALELDEDGHPVGSGGAPTSPPTPALRPESPVFSGGEVPLSSRGAVAAAXXXXXXXXXXXXXXXXXXXXXXXXKLLLTTLCLALGGLCTILSYGGGXXXXXXXXGPEPIKLSPGAVMRPGDRVASASHFLELRGDGNLVVGVNAVAAGAGDAQSGAAAAPLVWESRTACGKCEARVTKSGEIVLLRHRFFAVGRYRLGQHPLPDVLRFVRDPQPKSMTIASS 1128
            MSGTTDDIRVAAQMANNGAGGAPGAPTIATSFLTLPQVTPSRRRGSLPTEGWGEPFEIPLRDEDSGHCQITLEAIRMVKGENGTVTPQHFAKTNISLTPDLRQMKADMFGKVNNKGAPKKLVTLSLTLELFKGQAAAKNRSPRAGRGKLFGALEGALELDEDGHPVGSGGAPTSPPTPALRPESPVFSGGEVPLSSRGAVAAAXXXXXXXXXXXXXXXXXXXXXXXXKLLLTTLCLALGGLCTILSYGGGXXXXXXXXGPEPIKLSPGAVMRPGDRVASASHFLELRGDGNLVVGVNAVAAGAGDAQSGAAAAPLVWESRTACGKCEARVTKSGEIVLLRHRFFAVGRYRLGQHPLPDVLRFVRDPQPKSMTIASS
Sbjct:    1 MSGTTDDIRVAAQMANNGAGGAPGAPTIATSFLTLPQVTPSRRRGSLPTEGWGEPFEIPLRDEDSGHCQITLEAIRMVKGENGTVTPQHFAKTNISLTPDLRQMKADMFGKVNNKGAPKKLVTLSLTLELFKGQAAAKNRSPRAGRGKLFGALEGALELDEDGHPVGSGGAPTSPPTPALRPESPVFSGGEVPLSSRGAVAAAXXXXXXXXXXXXXXXXXXXXXXXXKLLLTTLCLALGGLCTILSYGGGXXXXXXXXGPEPIKLSPGAVMRPGDRVASASHFLELRGDGNLVVGVNAVAAGAGDAQSGAAAAPLVWESRTACGKCEARVTKSGEIVLLRHRFFAVGRYRLGQHPLPDVLRFVRDPQPKSMTIASS 376
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352398 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CLX2_9STRA3.080e-193100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LL06_ECTSI6.780e-3935.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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BLAST of jgi.p|Trimin1|352398 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZFW7_9STRA1.570e-238100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_118contigContig_118:219185..220673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352398|estExt_Genemark1.C_Ctg_1180021
DescriptionN-terminal conserved domain of Nudc.
COG categoryT
Max annot lvl4776|Peronosporales
EggNOG OGsKOG2265@1|root,KOG2265@2759|Eukaryota,3QEXN@4776|Peronosporales
Evalue0.000168
Seed ortholog272952.HpaP803517
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-11_006260.1
TranscriptId352720
TrackFilteredModels1
ProteinId352398
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352398gene_13246Tribonema minus UTEX_B_3156 geneContig_118 219185..220673 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13246_2exon_13246_2Tribonema minus UTEX_B_3156 exonContig_118 219185..219774 -
exon_13246_1exon_13246_1Tribonema minus UTEX_B_3156 exonContig_118 220413..220673 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13246UTR3_13246Tribonema minus UTEX_B_3156 three_prime_UTRContig_118 219185..219189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13246CDS_13246Tribonema minus UTEX_B_3156 CDSContig_118 220413..220673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352398Trimin1|352398|estExt_Genemark1.C_Ctg_1180021Tribonema minus UTEX_B_3156 polypeptideContig_118 219190..220673 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13246 ID=mRNA_13246|Name=jgi.p|Trimin1|352398|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=851bp|location=Sequence derived from alignment at Contig_118:219185..220673- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTCCCAGCAGAGCAGCAATGACGCTCTTGCTGATGCTGAAGCTCT
GGAGAGGGAACGAAGCTTTTACAAGCAGCAGGAAGGCGAAGGCAAGGCGC
GCATCAGACCAAATCGTGGCGCTGCTGAAGTGCCCACGCAGCGGGAGTGC
CATCAATATCGCTGGTTCCAGACGAATGAGCTGATCAGCGTCGAGGTTCC
CTTGTACAGGGCCTGCAAAGCAGAGGATCTCAGTTTTGTTCTTAGCGAGG
GCGGCATGCAGATATCAATACGCAGCGACCCCACCTTTGCGCCGCTGGCG
GGCGAGTTCCCCGGCAAGGTGGACACACGCGCCAGCACGTACAGCCTCCA
CTCCGACGGCAGCGGCGACCACTACCTGGCGCTCGTCCTGCGCAAGCTCG
CGCTCCCGGGGACTTCCGAGCTCTGGTACTGCCTGCTAGAGGGGGAAACC
CCCGCGCCGACGGTGCGCTTCCGCGGCGCGACGCGCCTGTACGCATGGAC
GCAGCGCCCGCGCGTCATCGACGTCGCGTTCCGCGTGCCGCCGCGCACGA
CGGCGGCGACGACGCGCGTGGACTTTGGCGAAGATGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGCGCCTGTCGCTGAGCGT
GGAGGGGTGCCCCGAGCTGACGCGGTTCGAGCGGCGGTTTCAGGGCGCGA
TCGACGCGGCCGACTGCTTCTGGATGCTGGACGAGGACGGCAAGGGCGGC
AAGGAGCTGAGCATCCAGGTGGCGAAGCGGCCGTCGGGGGCGGGGGTGCC
GTGGTGGGGGGGGCTGTTTGAGCACGAGGACGGCTGGGGTCAATAGCAGC
T
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protein sequence of jgi.p|Trimin1|352398

>Trimin1|352398|estExt_Genemark1.C_Ctg_1180021 ID=Trimin1|352398|estExt_Genemark1.C_Ctg_1180021|Name=jgi.p|Trimin1|352398|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=282bp
MCSQQSSNDALADAEALERERSFYKQQEGEGKARIRPNRGAAEVPTQREC
HQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLA
GEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGET
PAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGGGGG
GGGGGGGGGGARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDGKGG
KELSIQVAKRPSGAGVPWWGGLFEHEDGWGQ*
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mRNA from alignment at Contig_118:219185..220673-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13246 ID=mRNA_13246|Name=jgi.p|Trimin1|352398|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1489bp|location=Sequence derived from alignment at Contig_118:219185..220673- (Tribonema minus UTEX_B_3156 )
ATGTGCTCCCAGCAGAGCAGCAATGACGCTCTTGCTGATGCTGAAGCTCT
GGAGAGGGAACGAAGCTTTTACAAGCAGCAGGAAGGCGAAGGCAAGGCGC
GCATCAGACCAAATCGTGGCGCTGCTGAAGTGCCCACGCAGCGGGAGTGC
CATCAATATCGCTGGTTCCAGACGAATGAGCTGATCAGCGTCGAGGTTCC
CTTGTACAGGGCCTGCAAAGCAGAGGATCTCAGTTTTGTTCTTAGCGAGG
GCGGCATGCAGGTGAGAGGTGCCGGCTTCAATCATGACTATGCAATAGTC
ACTGTAGCATATCACCACCTGCTATCATGCGCATATTGTGCGTTGAAGCG
GTTGTGGCCCATCGCTATGAATTCATAGCTTGCAGCATAGGACTGCAAGC
GCTTGTGATGTCGGTCGCAGCCCCTGGAGCTTGGACATGGCCCTGCACCA
GCTCATCAAAACACTCGCAAGGACATCACGAAATGAGAACTTGTAGCTTT
TTTTGGAGCCAGAGGATCTCAGCTTTCGAGGGCCGTGTAGGGGCCGCTGA
GGAACGGCGCAGCATACAGGCACACCGGTACCACCGCATGCACCGCTCTT
ACTCTCCACCACCTGCACTGAAGAACACTTGGGTGTTGCTCGCCATTCGA
GCACTGTCCACAACAGGCAATGTCGCAGCCACCTTCACTGCCATGCATCC
GGTCGCCCTGCAGCTTCTGCTCGATTCACAATCTAATGCCACCGACCACA
TGTTTATTGTGAGCCCGTGTCGTTGCATGTGTTGGCCCCTGGCCTCCCCC
CGCCTTCGTCAACCCGCACACTCACCTTCTGTGACATCGACAAACACTCA
CATACAAATCGCGGCGCACTCCTTCCGCACTGCCTTGCTCTCCGCTCAGA
TATCAATACGCAGCGACCCCACCTTTGCGCCGCTGGCGGGCGAGTTCCCC
GGCAAGGTGGACACACGCGCCAGCACGTACAGCCTCCACTCCGACGGCAG
CGGCGACCACTACCTGGCGCTCGTCCTGCGCAAGCTCGCGCTCCCGGGGA
CTTCCGAGCTCTGGTACTGCCTGCTAGAGGGGGAAACCCCCGCGCCGACG
GTGCGCTTCCGCGGCGCGACGCGCCTGTACGCATGGACGCAGCGCCCGCG
CGTCATCGACGTCGCGTTCCGCGTGCCGCCGCGCACGACGGCGGCGACGA
CGCGCGTGGACTTTGGCGAAGATGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGCGCGCCTGTCGCTGAGCGTGGAGGGGTGCCC
CGAGCTGACGCGGTTCGAGCGGCGGTTTCAGGGCGCGATCGACGCGGCCG
ACTGCTTCTGGATGCTGGACGAGGACGGCAAGGGCGGCAAGGAGCTGAGC
ATCCAGGTGGCGAAGCGGCCGTCGGGGGCGGGGGTGCCGTGGTGGGGGGG
GCTGTTTGAGCACGAGGACGGCTGGGGTCAATAGCAGCT
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Coding sequence (CDS) from alignment at Contig_118:219185..220673-

>mRNA_13246 ID=mRNA_13246|Name=jgi.p|Trimin1|352398|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=846bp|location=Sequence derived from alignment at Contig_118:219185..220673- (Tribonema minus UTEX_B_3156 )
ATGTGCTCCCAGCAGAGCAGCAATGACGCTCTTGCTGATGCTGAAGCTCT
GGAGAGGGAACGAAGCTTTTACAAGCAGCAGGAAGGCGAAGGCAAGGCGC
GCATCAGACCAAATCGTGGCGCTGCTGAAGTGCCCACGCAGCGGGAGTGC
CATCAATATCGCTGGTTCCAGACGAATGAGCTGATCAGCGTCGAGGTTCC
CTTGTACAGGGCCTGCAAAGCAGAGGATCTCAGTTTTGTTCTTAGCGAGG
GCGGCATGCAGATATCAATACGCAGCGACCCCACCTTTGCGCCGCTGGCG
GGCGAGTTCCCCGGCAAGGTGGACACACGCGCCAGCACGTACAGCCTCCA
CTCCGACGGCAGCGGCGACCACTACCTGGCGCTCGTCCTGCGCAAGCTCG
CGCTCCCGGGGACTTCCGAGCTCTGGTACTGCCTGCTAGAGGGGGAAACC
CCCGCGCCGACGGTGCGCTTCCGCGGCGCGACGCGCCTGTACGCATGGAC
GCAGCGCCCGCGCGTCATCGACGTCGCGTTCCGCGTGCCGCCGCGCACGA
CGGCGGCGACGACGCGCGTGGACTTTGGCGAAGATGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGCGCCTGTCGCTGAGCGT
GGAGGGGTGCCCCGAGCTGACGCGGTTCGAGCGGCGGTTTCAGGGCGCGA
TCGACGCGGCCGACTGCTTCTGGATGCTGGACGAGGACGGCAAGGGCGGC
AAGGAGCTGAGCATCCAGGTGGCGAAGCGGCCGTCGGGGGCGGGGGTGCC
GTGGTGGGGGGGGCTGTTTGAGCACGAGGACGGCTGGGGTCAATAG
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