Trimin1|352398|estExt_Genemark1.C_Ctg_1180021 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352398
Unique Name	Trimin1\|352398\|estExt_Genemark1.C_Ctg_1180021
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	282

Homology

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BLAST of jgi.p|Trimin1|352398 vs. uniprot
Match: A0A836CLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX2_9STRA)

HSP 1 Score: 539 bits (1389), Expect = 2.080e-193
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0

Query:    1 MCSQQSSNDALADAEALERERSFYKQQEGEGKARIRPNRGAAEVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDGKGGKELSIQVAKRPSGAGVPWWGGLFEHEDGWGQ 281
            MCSQQSSNDALADAEALERERSFYKQQEGEGKARIRPNRGAAEVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDGKGGKELSIQVAKRPSGAGVPWWGGLFEHEDGWGQ
Sbjct:    1 MCSQQSSNDALADAEALERERSFYKQQEGEGKARIRPNRGAAEVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDGKGGKELSIQVAKRPSGAGVPWWGGLFEHEDGWGQ 281

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BLAST of jgi.p|Trimin1|352398 vs. uniprot
Match: D8LL06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL06_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 6.590e-39
Identity = 73/203 (35.96%), Postives = 111/203 (54.68%), Query Frame = 0

Query:   43 EVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDE 245
            ++P QR+CH+YRW QT     VE+P+ +AC+ EDL  V+ +  MQ++I++D +F  + G FPG VD R+ ++ +HS  + + Y+ L + KL  PG  E W+ LL+GE  +PT+RF+G T  Y+W Q    I++   VP   T   T +D    G               R+ +S    P+    E +F+G I   D  WML E
Sbjct:   50 DLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFN-EPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYSWKQNAETIELQIPVPDDVTKRKTTLDLDPAGD--------------RIHVSFSNRPDFEPLEGKFKGLISPLDSVWMLGE 237

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352398 vs. uniprot

BLAST of jgi.p|Trimin1|352398 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CLX2_9STRA	2.080e-193	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D8LL06_ECTSI	6.590e-39	35.96	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 7..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..40
None	No IPR available	PANTHER	PTHR12356:SF3	NUCLEAR MIGRATION PROTEIN NUDC	coord: 10..150
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 39..154 e-value: 4.2E-11 score: 44.8 coord: 155..279 e-value: 3.4E-9 score: 38.6
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 49..157
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 156..277
IPR007052	CS domain	PFAM	PF04969	CS	coord: 52..118 e-value: 6.3E-5 score: 23.9 coord: 164..244 e-value: 0.84 score: 10.6
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 48..146 score: 9.727283
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 159..273 score: 9.32893
IPR037898	NudC family	PANTHER	PTHR12356	NUCLEAR MOVEMENT PROTEIN NUDC	coord: 10..150

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_118	contig	Contig_118:219190..220673 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352398	mRNA_13246	Tribonema minus UTEX_B_3156	mRNA	Contig_118 219185..220673 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352398|estExt_Genemark1.C_Ctg_1180021 ID=Trimin1|352398|estExt_Genemark1.C_Ctg_1180021|Name=jgi.p|Trimin1|352398|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=282bp
MCSQQSSNDALADAEALERERSFYKQQEGEGKARIRPNRGAAEVPTQREC
HQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLA
GEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGET
PAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGGGGG
GGGGGGGGGGARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDGKGG
KELSIQVAKRPSGAGVPWWGGLFEHEDGWGQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008978	HSP20-like_chaperone
IPR007052	CS_dom
IPR037898	NudC_fam