mRNA_13240 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835ZCH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH6_9STRA) HSP 1 Score: 653 bits (1685), Expect = 2.450e-237 Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 1 Query: 1 MPRQQQRWRLACLAGAALLGAASAQTIRGFTANKPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKDNMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 951 MPRQQQRWRLACLAGAALLGAASAQTIRGFTANKPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKDNMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR Sbjct: 1 MPRQQQRWRLACLAGAALLGAASAQTIRGFTANKPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKDNMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 317
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835YGZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGZ7_9STRA) HSP 1 Score: 287 bits (735), Expect = 2.130e-92 Identity = 164/334 (49.10%), Postives = 208/334 (62.28%), Query Frame = 1 Query: 22 WRLACLAGAALL-------GAASAQTIRGFTANKP-IVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGV-GSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPD-PKGYTWGDGPCPDLGKDNMDGLICEKVYYLDRYTY--DPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFV------------VFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 951 WR CLAGA L A A+T RGFT P ++PS LVVE VWQF P + QI+W+PGT+QVVT HK G +RLY SIDA V+DF+ + ++ VDS+ DHGLLS FHP+F AG G+K FL+YSGNPKDVTLLPNN ++ RP WG+ D P GY W + C +LG DN +G ICEKVYY+DR D AT D+ L +CG+SSTHG G L+ + D F++GDG+QF + DPGFP ++ACYVPG G DQG F AQR D NGKV+++P LD+ PLT D+ +++G+RQP R Sbjct: 3 WR--CLAGATALWLCLLPHSADGAET-RGFTTGTPPVIPSHMDGLVVEHVWQF-DPDNLAECVVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNF---AGPNGTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPGGYEWPEDLCTNLGPDNYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFR 329
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA) HSP 1 Score: 278 bits (712), Expect = 1.910e-81 Identity = 151/307 (49.19%), Postives = 197/307 (64.17%), Query Frame = 1 Query: 52 LLGAASAQTIRGFTANKPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTE-QVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKD----NMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDM--LNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 951 L+G A+A + GF AN P VPS++ DLV+E +WQF D P ++ ++PGT+ VVT+HKTG MRLY ++DA V D+ + + DV S GDHGLLSF FHPDF G K FL Y+G PKDV++LPN+ + RP WG GPP+ GYTWGD CP L D N G ICE YY+DR D T K++ L+ +CG++S+HG G L+ + D+V + GDG+QF FDPGFP + CYVP G DQG F AQR D+ NGK+++VP A LD+AA +T + FISRG+RQP R Sbjct: 13 LVGCAAAAEVLGFKANPPDVPSQNEDLVIEHLWQFSMD----DPPVKLAFVPGTDGMVVTAHKTGFMRLYQNVDADVNDYKTLIDMRADVFSFGDHGLLSFAFHPDFEK----GVKKAFLHYTGEPKDVSVLPNDAAITPNRPQGWGLGPPETTGYTWGD-ICPCLDCDGTGPNHYGNICEHPYYIDRVAVDLDAGTFTKEVTLLNDVCGSASSHGPGTLIFINGDLVASNGDGSQFAEFDPGFPE-DGCYVPDAGADQGCFRAQRMDLPYANGKIMRVPAALLDSAATITLEQVEFISRGNRQPFR 309
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835YZK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZK9_9STRA) HSP 1 Score: 234 bits (596), Expect = 1.800e-68 Identity = 133/327 (40.67%), Postives = 191/327 (58.41%), Query Frame = 1 Query: 22 WRLACLAGAALLGAASAQTI--RGFTAN---KPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFAN--------NQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKD----NMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 951 WR + A AL SAQ + +GF A KP V D +++VEL+W + + D PT IK++PG+EQV+ +HK GT+RLYDSID+GV + + +V+S DHGL SF+FHPD++ G + +FLLYSG PKD+ LPN + A RPP +G GPP G TWGD CP L D N+DGL+CEK YYLDR++ D TA +D+ L+ CG+S+THG +L ++GKD+++ GD +Q D G ++AC+ P QG + R+ GK+ ++P+ LD+ L + +++G RQP R Sbjct: 2 WRASPAALLALCCLYSAQAVQFKGFDAGGSRKPEVRLDDDNVLVELLWTWDED----DLPTMIKFVPGSEQVLVAHKLGTLRLYDSIDSGVNAYTLLVDMTAELXXXXXXEVNSIHDHGLTSFEFHPDWDA----GVRKVFLLYSGEPKDIRKLPNYAAILADRPPDYGTGPPGDHGQTWGD-ECPCLDCDGTGANLDGLVCEKPYYLDRFSIDLDAGTATRDVTLLTASCGSSTTHGPTDLKVIGKDLIYGAGDSSQVATLDYGLD-VDACFDPNQSAGQGSYRCVRETFGAGKIGRIPHDLLDSDKELAFEQVELVAKGLRQPWR 318
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835ZE02_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE02_9STRA) HSP 1 Score: 221 bits (562), Expect = 2.520e-67 Identity = 117/287 (40.77%), Postives = 167/287 (58.19%), Query Frame = 1 Query: 103 PIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKD----NMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 951 P+ P+ DP+L +E +W F D+PT ++++PG++ V+T KTG +R Y+SIDA + F + DV S DHG+ S +FHPD+++ G F+LY+G PK V LPN + ++RP WG D GY W D CP L + N +GL+CE YY+DR D A KD+ L++ CG SS+HG G L+ VG D++F VGDG+QF + D G P + C+ P GK QG A RDD NGK+ ++PY +D+ L + I++G RQP R Sbjct: 1 PLQPNDDPELKLEQLWTFEYN----DKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDL----GVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGD---DNGGYKWWD-QCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPE-DGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 274
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA) HSP 1 Score: 214 bits (545), Expect = 5.380e-59 Identity = 116/248 (46.77%), Postives = 151/248 (60.89%), Query Frame = 1 Query: 220 VVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDG----PCPDLGKDNMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 951 VVTSHK+G +RL+ SI A D + DV DHGLLSF FHP F G + FLLY+G PKDV +LPNN + RP WGAGPP G+TW D C +G ++ G ICE YYLDR D T K++ L++V CG+SS+HG G ++ +G D++ +VGDG+Q+ DPGF ++ CYVPG G DQGVF AQR+D NGKV ++P A L+A A + S ++ G RQP R Sbjct: 2 VVTSHKSGMVRLHSSITADFADSTVMLDMTEDVADYNDHGLLSFHFHPQF----ANGVQKAFLLYTGEPKDVNVLPNNAEITPNRPDGWGAGPPGKMGFTWNDQCRCLDCDGIGPNHY-GNICEHPYYLDRVAVDLEAGTMTKEVTLLQVACGSSSSHGPGTVLSIGGDLLVSVGDGSQYAELDPGFD-VDGCYVPGAGDDQGVFRAQREDFGNGKVHRIPAALLNAPAAIALEATSPVAIGLRQPFR 243
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835YXY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY7_9STRA) HSP 1 Score: 196 bits (499), Expect = 3.840e-53 Identity = 103/251 (41.04%), Postives = 148/251 (58.96%), Query Frame = 1 Query: 106 IVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKD----NMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDML 846 + P D +L+VE +W + D+ IK++PG++QV++ HK G +RLYD++ + + + D GDHGLL+ ++HPD++ G + IF+LY+G PKDV LPNND V RP +WG GPP G W D CP L D N DGLICE YY+DR + D T+ KD+ L+ VMCG+S THG G+L ++GKD++++ G+G+QF VFD GF +D G +N+ D L Sbjct: 14 LAPVDDDNLLVEHIWTWQYD----DRAVMIKFVPGSDQVISVHKAGNVRLYDNLQSDPYYYKHLVDMTADTYDLGDHGLLAMEYHPDWDA----GVRKIFVLYTGEPKDVRQLPNNDAVEDDRPTSWGKGPPGKHGQLWPDS-CPCLDCDGAGKNRDGLICEHPYYIDRISVDLDAGTSKKDVTLLSVMCGSSDTHGPGDLKIIGKDLIYSTGEGSQFTVFDYGF------------EDDGCYNSDSDSPL 243
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835YQG5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG5_9STRA) HSP 1 Score: 146 bits (368), Expect = 8.210e-40 Identity = 78/158 (49.37%), Postives = 103/158 (65.19%), Query Frame = 1 Query: 127 DLVVELVWQFVQPAGNLDQP---TQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGP--CPDLGK--DNMDGLICE 579 DLVVE VW+F G +D+ T + W+PGTE+V+ + K G + +YD+IDAGV+++ + +DV S DHGLL F FHP+F K GVG+ +F+LYSG PKDVTLLPN+ VA +RP WG GPP KGY W + CP L K +N G +CE Sbjct: 1 DLVVEQVWKFDD--GIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFG-KPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLNNYGGKLCE 155
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835Z9F2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9F2_9STRA) HSP 1 Score: 127 bits (320), Expect = 2.890e-32 Identity = 74/174 (42.53%), Postives = 100/174 (57.47%), Query Frame = 1 Query: 64 ASAQTIRGFTAN---KPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLD----------------VDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGD 528 A A RGF A KP+V D +++VEL+W + D+PT IK++PG +QV+ +HK GT+RLYDSID+ V D+ + D V+S DHG+ SF+FHPD++ G + +F+LY+G PKDV LPN VV RPP +G GPP G TWGD Sbjct: 17 AQAAQFRGFGAGGSAKPVVLFDDDNVLVELLWAWDVD----DRPTMIKFVPGADQVMVAHKLGTLRLYDSIDSDVNDYKLLVDMTADLXXXXXXXXXXXXXXXVNSITDHGITSFEFHPDWDG----GVRKLFVLYTGEPKDVRKLPNYKVVLPYRPPAYGTGPPGTHGQTWGD 182
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835YYP6_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP6_9STRA) HSP 1 Score: 134 bits (337), Expect = 5.090e-32 Identity = 89/276 (32.25%), Postives = 131/276 (47.46%), Query Frame = 1 Query: 97 NKPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSG-----NPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKDNMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVG-KDMVFAVGDGAQFVVFDPGFPT-------------LNACYVPGNGKDQGVFNAQRDDMLNGKVIKV 867 N P++ +KD +LVV+ W+F ++ T +++ P + V+T HK G +RLYDS+D ED+ N + V S DHG++ F F P + V ++Y +L Y + T PN V A RP WGD CP CEK+ L R D A +TA +D L+ CG S+THG G + ++M+ G+ AQ+ +FD P +ACY P QG F+AQRDD ++GK I++ Sbjct: 59 NDPVIANKDVNLVVQQHWEF----SPQEKATALRFSPISAHVITIHKHGEVRLYDSVDVDGEDYKTILNIEDKVYSADDHGMVGFAFDPQYGVDR---NQYAYLFYMSQLGPAHAVSKTTFPN-PAVGATRP------------LDWGDNNCPLE-------TNCEKLSVLTRLLIDLAAKTAKEDAVLLVDQCGGSATHGVGAINFASTEEMIIMYGEHAQYALFDYNMPADAXXXXXXXXXXAKDACYDPAKLPGQGCFHAQRDDFIHGKGIRI 307 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13240 ID=mRNA_13240|Name=jgi.p|Trimin1|174798|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=951bp|location=Sequence derived from alignment at Contig_118:163995..165817- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCGCGACAGCAGCAGCGGTGGAGGTTAGCATGTCTGGCGGGCGCAGCback to top protein sequence of jgi.p|Trimin1|174798 >Trimin1|174798|e_gw1.118.33.1 ID=Trimin1|174798|e_gw1.118.33.1|Name=jgi.p|Trimin1|174798|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=317bp MPRQQQRWRLACLAGAALLGAASAQTIRGFTANKPIVPSKDPDLVVELVWback to top mRNA from alignment at Contig_118:163995..165817- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13240 ID=mRNA_13240|Name=jgi.p|Trimin1|174798|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1823bp|location=Sequence derived from alignment at Contig_118:163995..165817- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_118:163995..165817- >mRNA_13240 ID=mRNA_13240|Name=jgi.p|Trimin1|174798|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=951bp|location=Sequence derived from alignment at Contig_118:163995..165817- (Tribonema minus UTEX_B_3156 )back to top |