mRNA_13240 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174798
Unique NamemRNA_13240
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835ZCH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH6_9STRA)

HSP 1 Score: 653 bits (1685), Expect = 2.450e-237
Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 1
Query:    1 MPRQQQRWRLACLAGAALLGAASAQTIRGFTANKPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKDNMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 951
            MPRQQQRWRLACLAGAALLGAASAQTIRGFTANKPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKDNMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR
Sbjct:    1 MPRQQQRWRLACLAGAALLGAASAQTIRGFTANKPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKDNMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 317          
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835YGZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGZ7_9STRA)

HSP 1 Score: 287 bits (735), Expect = 2.130e-92
Identity = 164/334 (49.10%), Postives = 208/334 (62.28%), Query Frame = 1
Query:   22 WRLACLAGAALL-------GAASAQTIRGFTANKP-IVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGV-GSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPD-PKGYTWGDGPCPDLGKDNMDGLICEKVYYLDRYTY--DPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFV------------VFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 951
            WR  CLAGA  L        A  A+T RGFT   P ++PS    LVVE VWQF  P    +   QI+W+PGT+QVVT HK G +RLY SIDA V+DF+   + ++ VDS+ DHGLLS  FHP+F   AG  G+K  FL+YSGNPKDVTLLPNN  ++  RP  WG+   D P GY W +  C +LG DN +G ICEKVYY+DR     D AT     D+ L   +CG+SSTHG G L+ +  D  F++GDG+QF             + DPGFP ++ACYVPG G DQG F AQR D  NGKV+++P   LD+  PLT  D+  +++G+RQP R
Sbjct:    3 WR--CLAGATALWLCLLPHSADGAET-RGFTTGTPPVIPSHMDGLVVEHVWQF-DPDNLAECVVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNF---AGPNGTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPGGYEWPEDLCTNLGPDNYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFR 329          
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA)

HSP 1 Score: 278 bits (712), Expect = 1.910e-81
Identity = 151/307 (49.19%), Postives = 197/307 (64.17%), Query Frame = 1
Query:   52 LLGAASAQTIRGFTANKPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTE-QVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKD----NMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDM--LNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 951
            L+G A+A  + GF AN P VPS++ DLV+E +WQF       D P ++ ++PGT+  VVT+HKTG MRLY ++DA V D+    + + DV S GDHGLLSF FHPDF      G K  FL Y+G PKDV++LPN+  +   RP  WG GPP+  GYTWGD  CP L  D    N  G ICE  YY+DR   D    T  K++ L+  +CG++S+HG G L+ +  D+V + GDG+QF  FDPGFP  + CYVP  G DQG F AQR D+   NGK+++VP A LD+AA +T   + FISRG+RQP R
Sbjct:   13 LVGCAAAAEVLGFKANPPDVPSQNEDLVIEHLWQFSMD----DPPVKLAFVPGTDGMVVTAHKTGFMRLYQNVDADVNDYKTLIDMRADVFSFGDHGLLSFAFHPDFEK----GVKKAFLHYTGEPKDVSVLPNDAAITPNRPQGWGLGPPETTGYTWGD-ICPCLDCDGTGPNHYGNICEHPYYIDRVAVDLDAGTFTKEVTLLNDVCGSASSHGPGTLIFINGDLVASNGDGSQFAEFDPGFPE-DGCYVPDAGADQGCFRAQRMDLPYANGKIMRVPAALLDSAATITLEQVEFISRGNRQPFR 309          
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835YZK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZK9_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.800e-68
Identity = 133/327 (40.67%), Postives = 191/327 (58.41%), Query Frame = 1
Query:   22 WRLACLAGAALLGAASAQTI--RGFTAN---KPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFAN--------NQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKD----NMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 951
            WR +  A  AL    SAQ +  +GF A    KP V   D +++VEL+W + +     D PT IK++PG+EQV+ +HK GT+RLYDSID+GV  +    +           +V+S  DHGL SF+FHPD++     G + +FLLYSG PKD+  LPN   + A RPP +G GPP   G TWGD  CP L  D    N+DGL+CEK YYLDR++ D    TA +D+ L+   CG+S+THG  +L ++GKD+++  GD +Q    D G   ++AC+ P     QG +   R+    GK+ ++P+  LD+   L    +  +++G RQP R
Sbjct:    2 WRASPAALLALCCLYSAQAVQFKGFDAGGSRKPEVRLDDDNVLVELLWTWDED----DLPTMIKFVPGSEQVLVAHKLGTLRLYDSIDSGVNAYTLLVDMTAELXXXXXXEVNSIHDHGLTSFEFHPDWDA----GVRKVFLLYSGEPKDIRKLPNYAAILADRPPDYGTGPPGDHGQTWGD-ECPCLDCDGTGANLDGLVCEKPYYLDRFSIDLDAGTATRDVTLLTASCGSSTTHGPTDLKVIGKDLIYGAGDSSQVATLDYGLD-VDACFDPNQSAGQGSYRCVRETFGAGKIGRIPHDLLDSDKELAFEQVELVAKGLRQPWR 318          
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835ZE02_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE02_9STRA)

HSP 1 Score: 221 bits (562), Expect = 2.520e-67
Identity = 117/287 (40.77%), Postives = 167/287 (58.19%), Query Frame = 1
Query:  103 PIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKD----NMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 951
            P+ P+ DP+L +E +W F       D+PT ++++PG++ V+T  KTG +R Y+SIDA  + F    +   DV S  DHG+ S +FHPD+++    G    F+LY+G PK V  LPN   + ++RP  WG    D  GY W D  CP L  +    N +GL+CE  YY+DR   D     A KD+ L++  CG SS+HG G L+ VG D++F VGDG+QF + D G P  + C+ P  GK QG   A RDD  NGK+ ++PY  +D+   L    +  I++G RQP R
Sbjct:    1 PLQPNDDPELKLEQLWTFEYN----DKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDL----GVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGD---DNGGYKWWD-QCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPE-DGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 274          
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA)

HSP 1 Score: 214 bits (545), Expect = 5.380e-59
Identity = 116/248 (46.77%), Postives = 151/248 (60.89%), Query Frame = 1
Query:  220 VVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDG----PCPDLGKDNMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 951
            VVTSHK+G +RL+ SI A   D     +   DV    DHGLLSF FHP F      G +  FLLY+G PKDV +LPNN  +   RP  WGAGPP   G+TW D      C  +G ++  G ICE  YYLDR   D    T  K++ L++V CG+SS+HG G ++ +G D++ +VGDG+Q+   DPGF  ++ CYVPG G DQGVF AQR+D  NGKV ++P A L+A A +     S ++ G RQP R
Sbjct:    2 VVTSHKSGMVRLHSSITADFADSTVMLDMTEDVADYNDHGLLSFHFHPQF----ANGVQKAFLLYTGEPKDVNVLPNNAEITPNRPDGWGAGPPGKMGFTWNDQCRCLDCDGIGPNHY-GNICEHPYYLDRVAVDLEAGTMTKEVTLLQVACGSSSSHGPGTVLSIGGDLLVSVGDGSQYAELDPGFD-VDGCYVPGAGDDQGVFRAQREDFGNGKVHRIPAALLNAPAAIALEATSPVAIGLRQPFR 243          
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835YXY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY7_9STRA)

HSP 1 Score: 196 bits (499), Expect = 3.840e-53
Identity = 103/251 (41.04%), Postives = 148/251 (58.96%), Query Frame = 1
Query:  106 IVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKD----NMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDML 846
            + P  D +L+VE +W +       D+   IK++PG++QV++ HK G +RLYD++ +    +    +   D    GDHGLL+ ++HPD++     G + IF+LY+G PKDV  LPNND V   RP +WG GPP   G  W D  CP L  D    N DGLICE  YY+DR + D    T+ KD+ L+ VMCG+S THG G+L ++GKD++++ G+G+QF VFD GF            +D G +N+  D  L
Sbjct:   14 LAPVDDDNLLVEHIWTWQYD----DRAVMIKFVPGSDQVISVHKAGNVRLYDNLQSDPYYYKHLVDMTADTYDLGDHGLLAMEYHPDWDA----GVRKIFVLYTGEPKDVRQLPNNDAVEDDRPTSWGKGPPGKHGQLWPDS-CPCLDCDGAGKNRDGLICEHPYYIDRISVDLDAGTSKKDVTLLSVMCGSSDTHGPGDLKIIGKDLIYSTGEGSQFTVFDYGF------------EDDGCYNSDSDSPL 243          
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835YQG5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG5_9STRA)

HSP 1 Score: 146 bits (368), Expect = 8.210e-40
Identity = 78/158 (49.37%), Postives = 103/158 (65.19%), Query Frame = 1
Query:  127 DLVVELVWQFVQPAGNLDQP---TQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGP--CPDLGK--DNMDGLICE 579
            DLVVE VW+F    G +D+    T + W+PGTE+V+ + K G + +YD+IDAGV+++    +  +DV S  DHGLL F FHP+F  K GVG+  +F+LYSG PKDVTLLPN+  VA +RP  WG GPP  KGY W +    CP L K  +N  G +CE
Sbjct:    1 DLVVEQVWKFDD--GIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFG-KPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLNNYGGKLCE 155          
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835Z9F2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9F2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.890e-32
Identity = 74/174 (42.53%), Postives = 100/174 (57.47%), Query Frame = 1
Query:   64 ASAQTIRGFTAN---KPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLD----------------VDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGD 528
            A A   RGF A    KP+V   D +++VEL+W +       D+PT IK++PG +QV+ +HK GT+RLYDSID+ V D+    +   D                V+S  DHG+ SF+FHPD++     G + +F+LY+G PKDV  LPN  VV   RPP +G GPP   G TWGD
Sbjct:   17 AQAAQFRGFGAGGSAKPVVLFDDDNVLVELLWAWDVD----DRPTMIKFVPGADQVMVAHKLGTLRLYDSIDSDVNDYKLLVDMTADLXXXXXXXXXXXXXXXVNSITDHGITSFEFHPDWDG----GVRKLFVLYTGEPKDVRKLPNYKVVLPYRPPAYGTGPPGTHGQTWGD 182          
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Match: A0A835YYP6_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP6_9STRA)

HSP 1 Score: 134 bits (337), Expect = 5.090e-32
Identity = 89/276 (32.25%), Postives = 131/276 (47.46%), Query Frame = 1
Query:   97 NKPIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSG-----NPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKDNMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVG-KDMVFAVGDGAQFVVFDPGFPT-------------LNACYVPGNGKDQGVFNAQRDDMLNGKVIKV 867
            N P++ +KD +LVV+  W+F       ++ T +++ P +  V+T HK G +RLYDS+D   ED+    N +  V S  DHG++ F F P + V     ++Y +L Y       +    T  PN   V A RP              WGD  CP           CEK+  L R   D A +TA +D  L+   CG S+THG G +     ++M+   G+ AQ+ +FD   P               +ACY P     QG F+AQRDD ++GK I++
Sbjct:   59 NDPVIANKDVNLVVQQHWEF----SPQEKATALRFSPISAHVITIHKHGEVRLYDSVDVDGEDYKTILNIEDKVYSADDHGMVGFAFDPQYGVDR---NQYAYLFYMSQLGPAHAVSKTTFPN-PAVGATRP------------LDWGDNNCPLE-------TNCEKLSVLTRLLIDLAAKTAKEDAVLLVDQCGGSATHGVGAINFASTEEMIIMYGEHAQYALFDYNMPADAXXXXXXXXXXAKDACYDPAKLPGQGCFHAQRDDFIHGKGIRI 307          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174798 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A835ZCH6_9STRA2.450e-237100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YGZ7_9STRA2.130e-9249.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVH6_9STRA1.910e-8149.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZK9_9STRA1.800e-6840.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZE02_9STRA2.520e-6740.77Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CK08_9STRA5.380e-5946.77Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YXY7_9STRA3.840e-5341.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQG5_9STRA8.210e-4049.37Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z9F2_9STRA2.890e-3242.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYP6_9STRA5.090e-3232.25Plastocyanin-like domain-containing protein (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_118contigContig_118:163995..165817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174798|e_gw1.118.33.1
DescriptionPA14
COG categoryG
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG2133@1|root,COG2931@1|root,COG3299@1|root,COG2133@2|Bacteria,COG2931@2|Bacteria,COG3299@2|Bacteria,1G2CB@1117|Cyanobacteria,1HRM4@1161|Nostocales
Evalue3.41e-06
Seed ortholog32057.KB217478_gene2332
Hectar predicted targeting categorysignal peptide
TranscriptId175120
TrackFilteredModels1
ProteinId174798
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174798gene_13240Tribonema minus UTEX_B_3156 geneContig_118 163995..165817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174798Trimin1|174798|e_gw1.118.33.1Tribonema minus UTEX_B_3156 polypeptideContig_118 163995..165817 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13240_4exon_13240_4Tribonema minus UTEX_B_3156 exonContig_118 163995..164363 -
exon_13240_3exon_13240_3Tribonema minus UTEX_B_3156 exonContig_118 164600..164844 -
exon_13240_2exon_13240_2Tribonema minus UTEX_B_3156 exonContig_118 165216..165441 -
exon_13240_1exon_13240_1Tribonema minus UTEX_B_3156 exonContig_118 165707..165817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13240CDS_13240Tribonema minus UTEX_B_3156 CDSContig_118 165707..165817 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13240 ID=mRNA_13240|Name=jgi.p|Trimin1|174798|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=951bp|location=Sequence derived from alignment at Contig_118:163995..165817- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGACAGCAGCAGCGGTGGAGGTTAGCATGTCTGGCGGGCGCAGC
GCTCCTTGGAGCAGCCAGCGCGCAGACGATCCGAGGCTTCACAGCCAACA
AACCTATAGTGCCTTCTAAAGATCCAGACCTTGTGGTGGAGCTGGTCTGG
CAGTTCGTCCAACCTGCAGGCAACTTGGATCAGCCCACACAAATCAAATG
GTTGCCTGGCACCGAGCAGGTGGTAACATCACATAAAACCGGCACGATGC
GGCTGTACGACAGCATCGATGCAGGTGTCGAGGACTTCATCCCTTTCGCC
AACAATCAACTTGATGTGGACTCGGAAGGCGATCACGGCCTGCTGTCGTT
CCAGTTCCACCCCGACTTCAACGTCAAGGCCGGCGTCGGCTCCAAGTACA
TCTTCCTGCTGTACTCGGGTAACCCCAAGGATGTGACGCTCCTGCCCAAC
AACGACGTCGTTGCCGCGGTGCGCCCCCCTACGTGGGGTGCGGGACCCCC
TGATCCAAAGGGCTACACGTGGGGTGATGGCCCATGTCCCGACCTCGGCA
AGGACAACATGGACGGCCTCATCTGCGAGAAGGTGTACTACCTCGACCGC
TACACGTATGACCCTGCGACGCGCACCGCCGCCAAGGACATGCAGCTGAT
GGAGGTCATGTGCGGCACGTCGTCCACGCACGGCACGGGCGAGCTCGTGC
TGGTGGGCAAGGACATGGTGTTCGCGGTCGGCGACGGCGCGCAGTTTGTC
GTGTTCGACCCGGGGTTCCCGACGCTCAACGCGTGCTACGTGCCCGGCAA
CGGCAAGGACCAGGGCGTGTTCAACGCGCAGCGCGACGACATGCTCAACG
GCAAGGTCATCAAGGTCCCGTACGCGGCGCTCGACGCCGCGGCACCGCTC
ACGCCCGCCGACATCTCCTTCATCTCGCGCGGCTCGCGCCAGCCGCTGCG
C
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protein sequence of jgi.p|Trimin1|174798

>Trimin1|174798|e_gw1.118.33.1 ID=Trimin1|174798|e_gw1.118.33.1|Name=jgi.p|Trimin1|174798|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=317bp
MPRQQQRWRLACLAGAALLGAASAQTIRGFTANKPIVPSKDPDLVVELVW
QFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFA
NNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPN
NDVVAAVRPPTWGAGPPDPKGYTWGDGPCPDLGKDNMDGLICEKVYYLDR
YTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFV
VFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPL
TPADISFISRGSRQPLR
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mRNA from alignment at Contig_118:163995..165817-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13240 ID=mRNA_13240|Name=jgi.p|Trimin1|174798|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1823bp|location=Sequence derived from alignment at Contig_118:163995..165817- (Tribonema minus UTEX_B_3156 )
ATGCCGCGACAGCAGCAGCGGTGGAGGTTAGCATGTCTGGCGGGCGCAGC GCTCCTTGGAGCAGCCAGCGCGCAGACGATCCGAGGCTTCACAGCCAACA AACCTATAGTGGTGAGTCGCGTCTCTCTGCGCATATGCCTCGATCAGCTT TGCAGGCTGCATGACGACGACAACAACTGTTGCACTCTACGATGGCTTAG TGCTCTTGCTGCTCTTGACTTCAGGTCAACCAGACTCGTTGAACTGAAGA GCGCGCAGGGGTACAGAAAAAGTGAGAGCGACGTGCGGACACCCGGCGCC CAGACACGCGCCACCTATTAGCAGCAACCAAAACTCACTCTTATCATTGT CACATTGCTATGCCCTTTACCTGCAGCCTTCTAAAGATCCAGACCTTGTG GTGGAGCTGGTCTGGCAGTTCGTCCAACCTGCAGGCAACTTGGATCAGCC CACACAAATCAAATGGTTGCCTGGCACCGAGCAGGTGGTAACATCACATA AAACCGGCACGATGCGGCTGTACGACAGCATCGATGCAGGTGTCGAGGAC TTCATCCCTTTCGCCAACAATCAACTTGATGTGGACTCGGAAGGCGATCA CGGTGCGTGGCAGCTCTGATGTTCTTGTTGCACAGCGGCATCATTGCATC ATTTCATCCGCATATATACCAACTGAATGGTTCTTGCATGGTGGCAGCTC TGCTTTTGCTGATATGGCACTGTCACTCTGTACTCTGAGTTGAGGTGAGC CCATTACCACGCAATCACGAGCTGCACACGCCTGCTGTCAACTGTGAAAG ACGCAGGAGCTTTGCACAACACGATTGCAATCTTGCACCGCAAGCCCCCT CAATAACATTCAAGGTCTGGCTGTGGTCATCAGCATGTACAGCAATGCGC GCCGCACTCCTCCAACTGCAACTCGCCTCGCCCGCCGCTGCAACACCTCC CGCCGCCGCGCGCGCTCACGCAGGCCTGCTGTCGTTCCAGTTCCACCCCG ACTTCAACGTCAAGGCCGGCGTCGGCTCCAAGTACATCTTCCTGCTGTAC TCGGGTAACCCCAAGGATGTGACGCTCCTGCCCAACAACGACGTCGTTGC CGCGGTGCGCCCCCCTACGTGGGGTGCGGGACCCCCTGATCCAAAGGGCT ACACGTGGGGTGATGGCCCATGTCCCGACCTCGGCAAGGACAACATGGAC GGCCTCATCTGCGAGAAGGTGCGTTGCTGTGGTTTATCGACTCTAGTGAA GAGTGAGCGAAGGGCGCAGAAAATGCCGAGAGGATTGGTGTCAGGCTTGC TGCCAGATCCGCATGCACCGCCCTTGCAGCAGAGCGCGCCAATGCTCGCT GACATTGAACTTGGTTACGGTGATAATCAGACCCCCCTTTGCTGACATTG CCGAACGCACCCCCTCCCCCCCCCCCCCCCCTTCAACTGCTCCCCCCCCC CCAGGTGTACTACCTCGACCGCTACACGTATGACCCTGCGACGCGCACCG CCGCCAAGGACATGCAGCTGATGGAGGTCATGTGCGGCACGTCGTCCACG CACGGCACGGGCGAGCTCGTGCTGGTGGGCAAGGACATGGTGTTCGCGGT CGGCGACGGCGCGCAGTTTGTCGTGTTCGACCCGGGGTTCCCGACGCTCA ACGCGTGCTACGTGCCCGGCAACGGCAAGGACCAGGGCGTGTTCAACGCG CAGCGCGACGACATGCTCAACGGCAAGGTCATCAAGGTCCCGTACGCGGC GCTCGACGCCGCGGCACCGCTCACGCCCGCCGACATCTCCTTCATCTCGC GCGGCTCGCGCCAGCCGCTGCGC
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Coding sequence (CDS) from alignment at Contig_118:163995..165817-

>mRNA_13240 ID=mRNA_13240|Name=jgi.p|Trimin1|174798|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=951bp|location=Sequence derived from alignment at Contig_118:163995..165817- (Tribonema minus UTEX_B_3156 )
ATGCCGCGACAGCAGCAGCGGTGGAGGTTAGCATGTCTGGCGGGCGCAGC
GCTCCTTGGAGCAGCCAGCGCGCAGACGATCCGAGGCTTCACAGCCAACA
AACCTATAGTGCCTTCTAAAGATCCAGACCTTGTGGTGGAGCTGGTCTGG
CAGTTCGTCCAACCTGCAGGCAACTTGGATCAGCCCACACAAATCAAATG
GTTGCCTGGCACCGAGCAGGTGGTAACATCACATAAAACCGGCACGATGC
GGCTGTACGACAGCATCGATGCAGGTGTCGAGGACTTCATCCCTTTCGCC
AACAATCAACTTGATGTGGACTCGGAAGGCGATCACGGCCTGCTGTCGTT
CCAGTTCCACCCCGACTTCAACGTCAAGGCCGGCGTCGGCTCCAAGTACA
TCTTCCTGCTGTACTCGGGTAACCCCAAGGATGTGACGCTCCTGCCCAAC
AACGACGTCGTTGCCGCGGTGCGCCCCCCTACGTGGGGTGCGGGACCCCC
TGATCCAAAGGGCTACACGTGGGGTGATGGCCCATGTCCCGACCTCGGCA
AGGACAACATGGACGGCCTCATCTGCGAGAAGGTGTACTACCTCGACCGC
TACACGTATGACCCTGCGACGCGCACCGCCGCCAAGGACATGCAGCTGAT
GGAGGTCATGTGCGGCACGTCGTCCACGCACGGCACGGGCGAGCTCGTGC
TGGTGGGCAAGGACATGGTGTTCGCGGTCGGCGACGGCGCGCAGTTTGTC
GTGTTCGACCCGGGGTTCCCGACGCTCAACGCGTGCTACGTGCCCGGCAA
CGGCAAGGACCAGGGCGTGTTCAACGCGCAGCGCGACGACATGCTCAACG
GCAAGGTCATCAAGGTCCCGTACGCGGCGCTCGACGCCGCGGCACCGCTC
ACGCCCGCCGACATCTCCTTCATCTCGCGCGGCTCGCGCCAGCCGCTGCG
C
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