mRNA_13235 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352390
Unique NamemRNA_13235
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352390 vs. uniprot
Match: A0A835ZDX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX5_9STRA)

HSP 1 Score: 171 bits (432), Expect = 5.770e-51
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 
Query:    1 MRCFLLVSVVLCLVAMATAFTSAFTGAALSQGTATTAAASPLTMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKLXXXXXXXXXXXXXXXXXHGEKEGSA 360
            MRCFLLVSVVLCLVAMATAFTSAFTGAALSQGTATTAAASPLTMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKLXXXXXXXXXXXXXXXXXHGEKEGSA
Sbjct:    1 MRCFLLVSVVLCLVAMATAFTSAFTGAALSQGTATTAAASPLTMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKLXXXXXXXXXXXXXXXXXHGEKEGSA 120
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BLAST of jgi.p|Trimin1|352390 vs. uniprot
Match: A0A835YKP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.850e-25
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:   37 LVAMATAFT--SAFTGAALSQGTATTAAASPLTMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKL 285
            L A A+AF   SAFTG  +SQ T+T+   S L+MACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKL
Sbjct:   12 LAATASAFLAPSAFTGMQISQSTSTSE--SRLSMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKL 94
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BLAST of jgi.p|Trimin1|352390 vs. uniprot
Match: D7FV45_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV45_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.660e-8
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:   34 CLVAMATAFTSAFT---GAALSQGTATTAAASPLTMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKL 285
            CLVA + AF +  T     A +   +T +A     M+CR NAKK+K  RN+ NMRKF KRGTS+KKI+R +RQ+ A E EA+F+AK+
Sbjct:   11 CLVASSLAFVTPMTTLRAPATTSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEDEAEFLAKV 97
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352390 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZDX5_9STRA5.770e-51100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKP5_9STRA2.850e-2580.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FV45_ECTSI3.660e-849.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_118contigContig_118:128873..131805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352390|estExt_Genemark1.C_Ctg_1180013
Max annot lvl2759|Eukaryota
EggNOG OGs2E66M@1|root,2SCXT@2759|Eukaryota
Evalue4.93e-10
Seed ortholog2880.D7FV45
Hectar predicted targeting categorychloroplast
TranscriptId352712
TrackFilteredModels1
ProteinId352390
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352390gene_13235Tribonema minus UTEX_B_3156 geneContig_118 128873..131805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352390Trimin1|352390|estExt_Genemark1.C_Ctg_1180013Tribonema minus UTEX_B_3156 polypeptideContig_118 129221..131805 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13235_4exon_13235_4Tribonema minus UTEX_B_3156 exonContig_118 128873..129247 -
exon_13235_3exon_13235_3Tribonema minus UTEX_B_3156 exonContig_118 129651..129695 -
exon_13235_2exon_13235_2Tribonema minus UTEX_B_3156 exonContig_118 129777..129958 -
exon_13235_1exon_13235_1Tribonema minus UTEX_B_3156 exonContig_118 131697..131805 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13235UTR3_13235Tribonema minus UTEX_B_3156 three_prime_UTRContig_118 128873..129220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13235CDS_13235Tribonema minus UTEX_B_3156 CDSContig_118 131697..131805 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13235 ID=mRNA_13235|Name=jgi.p|Trimin1|352390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_118:128873..131805- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTGCTTTCTGCTTGTCAGCGTGGTGCTGTGCCTGGTCGCGATGGC
CACGGCCTTCACAAGCGCCTTCACGGGAGCTGCGCTGTCCCAGGGCACCG
CCACCACGGCGGCGGCGTCGCCGCTGACCATGGCGTGCCGTAACAACGCC
AAGAAGCAGAAGGCCAAGCGCAACCAGGACAACATGCGCAAGTTCCGCAA
GCGCGGCACGTCCAAGAAGAAGATTGTGCGCGGCAAGCGCCAGCAGACGG
CGCGCGAGAAGGAGGCGGACTTCATGGCCAAGCTGTACCAGACGGCGCGC
GAGAAGGAGGCCGACTTCATGGCCAAGCTGTACCAGCACGGCGAGAAGGA
GGGCTCCGCATAAAGCAGCACCAGCGACGCGCCCCTCTCCAACGGTGCTC
TCGCGCAGCGCCGCCGCCGCCGCCGCTCAAGCCCGCACTGTCGCGTGTGA
CGTGCCACGGCGCAGTTTTCCCTTCGAGAGGCGCAAGGGGGCTTTCCCCA
ACGCCGCGTGTATGTCAGCGCGGCCCGCTGCCGCCGCCACCGCCGCCGCG
CCGCCTGTGCGCGCAAGAGTAGAGGCAGCGCGCTTACGGCGCGCAGCGGG
CGGTGCGCCGTCGCCGCCGCCGCTCGTGCCGATGCCGAGTTTCCTGTACG
GAACTGTTTTGAGCGGCGCGCTGTCGAGCGCGTTCTGAAATGTCACTTTT
CTGTGAGCCGT
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protein sequence of jgi.p|Trimin1|352390

>Trimin1|352390|estExt_Genemark1.C_Ctg_1180013 ID=Trimin1|352390|estExt_Genemark1.C_Ctg_1180013|Name=jgi.p|Trimin1|352390|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp
MRCFLLVSVVLCLVAMATAFTSAFTGAALSQGTATTAAASPLTMACRNNA
KKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKLYQTAR
EKEADFMAKLYQHGEKEGSA*
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mRNA from alignment at Contig_118:128873..131805-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13235 ID=mRNA_13235|Name=jgi.p|Trimin1|352390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2933bp|location=Sequence derived from alignment at Contig_118:128873..131805- (Tribonema minus UTEX_B_3156 )
ATGAGGTGCTTTCTGCTTGTCAGCGTGGTGCTGTGCCTGGTCGCGATGGC
CACGGCCTTCACAAGCGCCTTCACGGGAGCTGCGCTGTCCCAGGGCACCG
CCACCACGGGTGAGTTTGACAGCAATTTGAGCCCATCGTAGTCCTGTGCC
GCGTGTAGGGGTTTTCGTAAGCGGCGGTCATTAGAGCACGCGCTTTTGCG
ATCATCACGTAGCGGCAGGTTGGCAGGCCATTTGTTACGAGGGTCCAGCG
ACTGGGTGCATGCGGTCTGCGTGAGCAGCTTATCGCAAGCGTGTGTGCAA
GCGAGTGCTCCATGCTGCAGCAGCTTACTGGTAATATTCATCGAACCAGC
CGCAACTGAACGATGTTCAGCTACTTCTGCAGGGGTGGCGGTTGGCACCT
GCAAGTCGGTTGAAGTGTCTCAGCAAGTCTAGTTCTCTCTTGGGTGGCCG
AACGATACCTGTTCTGCGACAGTGATTCAGCTGCTGACTGCACAATGTTC
GCTGCAGCTGTCTTCACTGCGACTGCTACACTTGCTGCTAAAGAAAAGTC
GCATATGGGACATGTGCAGTTTCGCACAGAAGAGGCACTTGAAACCGAAA
ATACTAACGGTACTTGCCATGCCTCCGGCATGCATCCCCCAATATCCCTC
ACACTATTGTTTCAGGTCTGTTACAAACTTCCTAGCACTTGCGTTGTGCC
GCAAAAGCGCATGTTGTTGCAAAGCTACAGTAGGGGCTGCCTGCTGTCAC
ATGCCACTTCAAAGGTAACACGTGCGCATCCTCGGCACCACCCAGCTGCC
GCCGAGGGAATGCCGCACGCTGAAACTGACCTTACTGTTCACGTAGCTGC
CCTGCTCTGCGCCTTCGTTTGCTCAGAGCATGCGCAAGCGACCATTGCCT
CCATTGTCGTGCTCATCAGTGCTCCAAACTCATTACTGTGAACGCGACCG
CACTTGCAACAAGTGCAGTGAGCCCCCCCCCCAGCCCCAGTAGCTGGCCT
GCTCTGCGCGCCCGTTTCCGTAGAGCACGTGCGGGCGAGCGTTGCCTCGT
TTGTCGTGCTTATCAGCGCTCCACACGCGCAACTGTGAATGCCGCCGCAT
GTGCGACAAGTGCAGTGAGCCTCCCCCCCCCCCCCCCTCCACATCAAACC
CAGCAATGCAGCCAACAAAAAGGACTTGAAGTTGCACGGCGCGAAGCTCG
CCGAATTAAAGCCATCGCGTGTCTGTCAGAGTGCAGGGGCAGGGGGAAGG
GGGGGTTCATCACGTTGCAGGCTGTCGCCGCAGCCACCTTCCTGCACGTG
TGTGTGCAGACGCCTGGTTACCCGTATGCTGAGGGTTAGGGTCAGGGCTA
GGGTCAGAGGTAGAGTTATGGCGAAGGCTAGGGTTAGCGTTAGGGTAATC
GCTTCCAGGGTGCTGCTGCGGTGGCGGCGCCTGGCTGCATTGTGCACAAA
CGGCGCTGGCAGTTATGAGCGGACCACCCGAGTGCGCATGCGTCTCACTC
GGGGGGCTTGGATTGAAACAATTTTCAGACTCAGTTGATCGCGTTGCGGC
ACGATGAAGCGGTGGGGCGCTGCGCCGCCGGCGCCGCTGCCATCAGTTTC
GTGCCGCAGCGTCGCGTGCCTTCCATGCGCGGGCCGCTCATCGAAATCCG
AATTCGGCAAGGGTGCGCGGCTTTTTGTGGCCGTGCGTGTTACGCTCCTG
CACGGCCCGTTCACAAACACGCCTCGCAGCGAAGCACGAGGTTGACGAGA
CTGCATTTTATCTTTCAAGTCGCGCAGTTCAAATCGCACTTTGCAACTGT
TGCCGCGCGTGTGACGCTCACCTGTGACGCTCCGCGCGCGCGCGCAGCGG
CGGCGTCGCCGCTGACCATGGCGTGCCGTAACAACGCCAAGAAGCAGAAG
GCCAAGCGCAACCAGGACAACATGCGCAAGTTCCGCAAGCGCGGCACGTC
CAAGAAGAAGATTGTGCGCGGCAAGCGCCAGCAGACGGCGCGCGAGAAGG
AGGCGGACTTCATGGCCAAGCTGTACCAGGTGCGTGAATTCATGAGTTGC
ACATGTGATTGTGCATTTGTATGAGTCAAGAAGAAGATTGTGCGCGGCAA
GCGCCAGCAGACGGCGCGCGAGAAGGAGGCCGACTTCATGGCCAAGCTGT
ACCAGGTGCGTGAATGCATGAATGTGACCGTGTGATTTTTCACGTGTATG
ATCATCACATGTGGCCAAGCAGTATTAAGAAGATAGTGCGTGAAAAGACT
AGCAGACGGCGCGCGAGAAGACTTCATGGCCAAGCCATACTAGGTGCGTG
AATTCATGAATTTTACATGTGATTTTCACTACCATGAATCATCAAATCAT
CACAGCAGACGGCGCGCAAAGAAGGAAGACTTCATGGCCAAGCTGTACCA
GGTTTGCACCCTGGTAAATAGTGTGGAAGCTTTAGCGATGGTCGCAGTCT
GGATCATTCGCGAGCAGAACTCATCTCTGATGACGCAAGCTCCAATGCAC
GCTTCGTCGCCTCATGCCGCACGATGAATACCCCCTCCCCCCCCCCTCGC
GCGCGCAGCACGGCGAGAAGGAGGGCTCCGCATAAAGCAGCACCAGCGAC
GCGCCCCTCTCCAACGGTGCTCTCGCGCAGCGCCGCCGCCGCCGCCGCTC
AAGCCCGCACTGTCGCGTGTGACGTGCCACGGCGCAGTTTTCCCTTCGAG
AGGCGCAAGGGGGCTTTCCCCAACGCCGCGTGTATGTCAGCGCGGCCCGC
TGCCGCCGCCACCGCCGCCGCGCCGCCTGTGCGCGCAAGAGTAGAGGCAG
CGCGCTTACGGCGCGCAGCGGGCGGTGCGCCGTCGCCGCCGCCGCTCGTG
CCGATGCCGAGTTTCCTGTACGGAACTGTTTTGAGCGGCGCGCTGTCGAG
CGCGTTCTGAAATGTCACTTTTCTGTGAGCCGT
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Coding sequence (CDS) from alignment at Contig_118:128873..131805-

>mRNA_13235 ID=mRNA_13235|Name=jgi.p|Trimin1|352390|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_118:128873..131805- (Tribonema minus UTEX_B_3156 )
ATGAGGTGCTTTCTGCTTGTCAGCGTGGTGCTGTGCCTGGTCGCGATGGC
CACGGCCTTCACAAGCGCCTTCACGGGAGCTGCGCTGTCCCAGGGCACCG
CCACCACGGCGGCGGCGTCGCCGCTGACCATGGCGTGCCGTAACAACGCC
AAGAAGCAGAAGGCCAAGCGCAACCAGGACAACATGCGCAAGTTCCGCAA
GCGCGGCACGTCCAAGAAGAAGATTGTGCGCGGCAAGCGCCAGCAGACGG
CGCGCGAGAAGGAGGCGGACTTCATGGCCAAGCTGTACCAGACGGCGCGC
GAGAAGGAGGCCGACTTCATGGCCAAGCTGTACCAGCACGGCGAGAAGGA
GGGCTCCGCATAA
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