Trimin1|352390|estExt_Genemark1.C_Ctg_1180013 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352390
Unique NameTrimin1|352390|estExt_Genemark1.C_Ctg_1180013
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length121
Homology
BLAST of jgi.p|Trimin1|352390 vs. uniprot
Match: A0A835ZDX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX5_9STRA)

HSP 1 Score: 171 bits (433), Expect = 5.750e-53
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MRCFLLVSVVLCLVAMATAFTSAFTGAALSQGTATTAAASPLTMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKLXXXXXXXXXXXXXXXXXHGEKEGSA 120
            MRCFLLVSVVLCLVAMATAFTSAFTGAALSQGTATTAAASPLTMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKLXXXXXXXXXXXXXXXXXHGEKEGSA
Sbjct:    1 MRCFLLVSVVLCLVAMATAFTSAFTGAALSQGTATTAAASPLTMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKLXXXXXXXXXXXXXXXXXHGEKEGSA 120          
BLAST of jgi.p|Trimin1|352390 vs. uniprot
Match: A0A835YKP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 7.420e-27
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 0
Query:   13 LVAMATAFT--SAFTGAALSQGTATTAAASPLTMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKL 95
            L A A+AF   SAFTG  +SQ T+T+   S L+MACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKL
Sbjct:   12 LAATASAFLAPSAFTGMQISQSTSTSE--SRLSMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKL 94          
BLAST of jgi.p|Trimin1|352390 vs. uniprot
Match: D7FV45_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV45_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.010e-9
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 0
Query:   12 CLVAMATAFTSAFT---GAALSQGTATTAAASPLTMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKL 95
            CLVA + AF +  T     A +   +T +A     M+CR NAKK+K  RN+ NMRKF KRGTS+KKI+R +RQ+ A E EA+F+AK+
Sbjct:   11 CLVASSLAFVTPMTTLRAPATTSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEDEAEFLAKV 97          
BLAST of jgi.p|Trimin1|352390 vs. uniprot
Match: A0A7S1E1G2_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E1G2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.350e-5
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 0
Query:    5 LLVSVVLCLVAMATAFTSAFTGAALSQGTATTAAASPLTMACRNNAKKQKAKRNQDNMRKFR---KRGTSKKKIVRGKRQQTAREKEADFMAK 94
            LLV V+L LVA++T    AFT  A+   +A  +  + L   CR+NAKK+K KRN++NMRKF+   KRG S++K+++  +   AR KEA+F+AK
Sbjct:    5 LLVLVILALVALST---QAFTVPAIGLKSAAPSFCTSLE-GCRSNAKKEKIKRNRENMRKFKSPGKRGLSRRKMLKKAQAANARAKEAEFIAK 93          
BLAST of jgi.p|Trimin1|352390 vs. uniprot
Match: A0A6U1BJI3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BJI3_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 4.390e-5
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 0
Query:   44 MACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKL 95
            M CR NAKK+K KRN DNMR+FRK G  K   ++ KR+ T +E+E +FM+ L
Sbjct:   50 MGCRRNAKKEKRKRNSDNMRRFRKHGNQKNSALQAKRE-TRKEEEVEFMSSL 100          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352390 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835ZDX5_9STRA5.750e-53100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKP5_9STRA7.420e-2780.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FV45_ECTSI3.010e-949.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1E1G2_9STRA1.350e-546.24Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A6U1BJI3_9STRA4.390e-553.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_118contigContig_118:129221..131805 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352390mRNA_13235Tribonema minus UTEX_B_3156 mRNAContig_118 128873..131805 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352390|estExt_Genemark1.C_Ctg_1180013 ID=Trimin1|352390|estExt_Genemark1.C_Ctg_1180013|Name=jgi.p|Trimin1|352390|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp
MRCFLLVSVVLCLVAMATAFTSAFTGAALSQGTATTAAASPLTMACRNNA
KKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKLYQTAR
EKEADFMAKLYQHGEKEGSA*
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